Cooperative Fish and Wildlife Research Units Program: Alabama
Education, Research and Technical Assistance for Managing Our Natural Resources

Alabama Staff Member


Dr. Jonathon Valente

Dr. Jonathon Valente

Assistant Unit Leader
Phone: (334) 844 - 9231
Email: jvalente@usgs.gov
Faculty Email: jjv0016@auburn.edu
Faculty Website

Education

  • Ph D Oregon State University 2017
  • MS Oregon State University 2017
  • MS Louisiana State University 2009
  • BA Miami University 2004

Biography

I am a research ecologist and statistician who uses advanced quantitative tools to answer questions at the intersection of fundamental ecology and applied conservation. My research aims to understand the factors impacting the distributions and population dynamics for individual species and whole communities, then use that information to identify populations of conservation concern and ultimately develop effective conservation and management actions.

I received my Bachelor's degree from Miami University in Zoology and Environmental Science. While there, I studied trophic interactions in freshwater systems. I attended Louisiana State University to pursue a MS in wildlife studying habitat use in secretive marsh birds. I then worked as a wildlife biologist at the U.S. Army Engineer Research and Development Center addressing conservation issues on DoD properties. Eventually I returned to graduate school at Oregon State University to pursue a MS in statistics and a PhD in Forest Ecosystems and Society studying the effects of forest fragmentation on breeding birds. I then did a postdoc with at the Smithsonian Migratory Bird Center comparing land-sparing and land-sharing conservation approaches around coffee farms. In my second postdoc (Oregon State), I worked to better understand factors limiting the distribution of endangered Marbled Murrelets.

Areas of Expertise

AI/Machine Learning, Anthropogenic Impacts, Behavioral Ecology, Biodiversity, Forest Ecology, GIS/Spatial Analysis, Habitat Management, Invasive Species, Landscape Ecology, Movement Ecology, Population Dynamics, Population and Community Ecology, Remote Sensing, Species Distribution Modeling, Species Management, Statistics and Modelling, T&E Species Management, Wetland Ecology, Wildlife Management

Taxon Groups Studied

Coastal/Marine Birds, Pollinators, Songbirds, Species of Greatest Conservation Need, Water/Marsh Birds

Research Publications Publication Date
Valente, J.J., V. Jirinec, and M. Leu. 2024. Thinking beyond the closure assumption: designing surveys for estimating biological truth with occupancy models. Methods in Ecology and Evolution 15:2289-2300. December 2024
Valente, J. J., S. L. King, and R. Wilson. 2011. Distribution and habitat associations of breeding secretive marsh birds in Louisiana's Mississippi Alluvial Valley. Wetlands 31(1): 1-10. February 2011
Valente, J. J., S. L. King, and R. R. Wilson. 2012. Summer use of rice fields by secretive marsh birds in the Mississippi Alluvial Valley of northeast Louisiana. Southeastern Naturalist 11(3):423-436. September 2012
Valente JJ, Gannon D, Hightower J, Kim H, Leimberger K, Macedo R, Rousseau J, Weldy M, Zitomer R, Fahrig L, Fletcher R, Wu J, Betts MG. 2023. Toward conciliation in the habitat fragmentation and biodiversity debate. Landscape Ecology. 38, 2717-2730. https://doi.org/10.1007/s10980-023-01708-9. | Abstract | Download | Publisher Website September 2023
Valente JJ, Adrean LJ, Nelson SK, Betts MG, Roby DD, and Rivers JW. 2024. Presence-absence surveys yield spatially imprecise information about nesting sites of an endangered, forest-nesting seabird. PLoS ONE 19:e0315531. December 2024
Latif, QS, JJ Valente, A. Johnston, KL Davis, FA Fogarty, AW Green, GM Jones, M Leu, NL Michel, DC Pavlacky, EA Rigby, CS Rushing, JS Sanderlin, MW Tingley, and Q Zhao. 2024. Designing count-based studies in a world of hierarchical models. Journal of Wildlife Management, 88:e22622. https://doi.org/10.1002/jwmg.22622. June 2024
Galbraith, S.M., Valente, J.J., Dunn, C.J. and Rivers, J.W. (2024), Both Landsat- and LiDAR-derived measures predict forest bee response to large-scale wildfire. Remote Sensing in Ecology and Conservation 10: 24-38. https://doi.org/10.1002/rse2.354 | Abstract | Download | Publisher Website July 2023
Duarte, A, M.J. Weldy, D.B. Lesmeister, Z.J. Ruff, J.M.A. Jenkins, J.J. Valente, and M.G. Betts. 2024. Passive acoustic monitoring and convolutional neural networks facilitate high-resolution and broadscale monitoring of a threatened species. Ecological Indicators, 162:112016. https://doi.org/10.1016/j.ecolind.2024.112016 | Abstract | Download | Publisher Website April 2024
Abubakar, Sinka Khadijah
Master's
sza0209@auburn.edu

Blake, Kylie
Master's
kzb0180@auburn.edu

Gans, Darcey
Master's
dag0061@auburn.edu

Parvin, Lucas
Master's
lkp0038@auburn.edu

Tomey, Rylee
PhD
rdt0029@auburn.edu

Presentations Presentation Date
Valente, JJ. Biodiversity conservation in human-dominated landscapes: tools, challenges, and solutions. (2024). Miami University Biology Department Seminar, Oxford, OH. June 2024
Valente, JJ. (2023). Challenges and solutions at the intersection of coffee, conservation, and communities. Kreher Preserve and Nature Center Science on Saturday seminar series, Auburn, AL. January 2023
Valente, JJ, JW Rivers, Z Yang, SK Nelson, JM Northrup, DD Roby, CB Meyer, and MG Betts. (2023). Ongoing forest fragmentation negatively affects the distribution of an endangered forest-breeding bird. American Ornithological Society and Society of Canadian Ornithologists Joint Conference. August 2023
Valente, JJ, JR Rivers, Z Yang, SK Nelson, J Northrup, D Roby, C Meyer, and M Betts. (2023). Negative effects of ongoing habitat fragmentation on Marbled Murrelets are amplified near its range edge. Annual Meeting of the Pacific Seabird Group. February 2023
Valente, J.J., V. Jirinec, and M. Leu (2024). Thinking beyond the closure assumption: designing surveys for estimating biological truth with occupancy models. 109th annual meeting of the Ecological Society of America, Long Beach, CA, 4-9 August 2024. August 2024
Rivers, J.W., L.J. Adrean, J.A. Bailey Guerrero, J. Dachenhaus, J.L. Fisher, C. Frisinger, M.-S. Garcia-Heras, B.D. Gerber, C.B. Meyer, S.K. Nelson, J.M. Northrup, D.D. Roby, J.J. Valente, C.Wolf, E. Woodis, Z. Yang, and M.G. Betts. 2024. Warming ocean conditions curtail breeding activity of the Marbled Murrelet, a most unusual forest-nesting bird. Oregon Chapter of The Wildlife Society Annual meeting, Hood River, OR. February 2023
Rivers, J., L. Adrean, J. Bailey-Guerrero, J. Dachenhaus, J. Fisher, C. Frisinger, M. Garcia-Heras, B. Gerber, C. meyer, K. Nelson, J. Northrup, D. Roby, J.J. Valente, C. Wolf, and E. Woodis. (2023). Influence of a warming ocean on the breeding activity of a most unusual - and threatened - forest-nesting bird. American Ornithological Society annual meeting. August 2023
Morse, L., R. Bennett, and J.J. Valente (2024). Forest cover and coffee cultivation system influence bird community functional diversity in the Sierra Nevada de Santa Marta, Colombia. Meeting of the American Ornithological Society, Estes Park, CO, 1-5 October 2024. October 2024
Gomez-Maldonado, S., M.T. McDonough, J.J. Valente, M.D. Smith, and S.S. Ditchkoff. 2025. Spatial behavior of uncaptured wild pigs following sounder removal via trapping. The Wildlife Society Wildlife Damage Management Conference, Starkville, MS. March 2025
Gomez-Maldonado, S., M.T. McDonough, J.J. Valente, M.D. Smith, and S.S. Ditchkoff. 2023. Effect of trapping on spatial dynamics of wild pigs in southeastern Alabama. Southeastern Association of Fish and Wildlife Agencies annual meeting, Corpus Christi, Texas. October 2023
Duarte, A., A. Thomas, D. Lesmeister, J. Peterson, J.J. Valente, J. Jenkins, M. Gostin, M. Betts, M. Weldy, and Z. Ruff. 2023. Exploring the use of bioacoustic surveys to detect marbled murrelets in forest habitats. The Wildlife Society Annual Meeting, Louisville, KY. November 2023
Abubakar, S.K., L. Narine, and J.J. Valente. (2024). Effects of local-scale land management decisions on progress toward regional wildlife habitat targets. 109th Annual Meeting of the Ecological Society of America, Long Beach, CA. August 2024
Type Citation Publication Date
Software Release Valente, J.J., Adrean, L.J., Nelson, S.K., Betts, M.G., Roby, D.D., and Rivers, J.W., 2024, Occupancy surveys near Marbled Murrelet (Brachyramphus marmoratus) nest sites and random locations between 2018 and 2022 along the central Oregon coast, USA: U.S. Geological Survey data release, https://doi.org/10.5066/P13DHFQP. July 2024
Data Release Valente, J., Jirinec, V., and Leu, M. 2024. Wood Thrush Movement and Occupancy. Version 1.0.0: U.S. Geological Survey software release. Reston, Va. https://doi.org/10.5066/P98BJAQU July 2024
Role and Organization Individual         Start Date        End Date       
Pacific Seabird Group - I am a member of the Pacific Seabird Group. Valente 2020 Present
Pacific Seabird Group - I am a contributing member of the Marbled Murrelet Technical Committee. Valente 2020 Present
American Ornithological Society - I am a member of the American Ornithological Society. Valente 2016 Present