Utah Research: Projects, Research Publications, Presentations, Thesis and Dissertations, Technical Publications

Utah Research Activities

Our expertise includes landscape and spatial ecology, population and system analysis for both aquatic and terrestrial systems, aquatic food webs of large water systems, and wildlife habitat and vegetation modelling. Technical expertise in the fields of statistics, GIS and spatial analysis is strong.

Projects

Research Publications

Research Publications	Publication Date
Zimmermann, N.E., T.C. Edwards, Jr., C.H. Graham, P.B. Pearman and J-C Svenning. 2010. New trends in species distribution modelling. Ecography 33:985-989.	December 2010
Zimmermann, N. E., R. A. Washington-Allen, R. D. Ramsey, M. E. Schaepman, L. Mathys, B. K�tz, M. Kneubuehler, and T. C. Edwards, Jr. 2007. Modern remote sensing for environmental monitoring of landscape states and trajectories. Pages 65-91 in F. Kienast, O. Wildi, and S. Ghosh, editors. A changing world: challenges for landscape research. Springer, Dordrecht, The Netherlands.	September 2007
Zimmermann, N. E., Moisen, G. G., Edwards, T. C., Jr., Frescino, T. S., and J. A. Blackard. 2007. Testing the partial contributions of remotely-sensed and topo-climatic predictors for tree species modelling in Utah. Journal of Applied Ecology 44:1057-1067.	September 2007
Zimmerman, N. E., N. G. Yoccoz, T. C. Edwards, Jr., E. S. Meier, W. Thuiller, A. Guisan, D. R. Schmatz, and P. B. Pearman. 2009. Do climatic extremes explain tree species spatial patterns at a regional scale? Proceedings of tha National Academy of Sciences 106:19723-19728.	November 2009
Zhang, Q., J. Jin, P. Budy, S.E. Null, and X. Wang. 2021. Predicting the response of Arctic lake thermal processes to a whole-lake warming manipulation. Geophysical Research Letters, 48, e2021GL092680. https://doi.org/10.1029/2021GL092680. USGS FSP IP-127181. \| Abstract	December 2021	We investigated how lake thermal processes responded to whole-lake warming manipulation in a lake in the Alaskan Arctic through observations and numerical modeling. The warming manipulation was conducted by artificially heating the epilimnion as a proxy for climate warming. We performed numerical modeling and used an improved lake scheme based on the Community Land Model (CLM). We simulated a control run (CTL) without warming and a warming manipulation simulation (WARM). Results indicated the WARM simulation accurately captured observed lake temperature profiles where water stratification was extended in time, and water stability was strengthened. Two additional sensitivity tests with different warming onset dates and of the same warming duration showed that earlier onsets of warming are predicted to make the lake water column more stable and less easily mixed relative to a later onset of warming. The results of this study provide a more complete understanding of lake thermal processes in arctic freshwater lake systems and how they will respond to predicted future warming.
Zarnetske, P. L., T. C. Edwards, Jr., and G. G. Moisen. Modeling forest bird species likelihood of occurrence in utah with FIA and LANDFIRE map prodcuts and ecologically-based pseudo-absence points. Pages 291-306 in Proceedings of the Fifth Annual Forest Inventory and Analysis Symposium, Portland, Maine, USA, R. E. McRoberts, G. A. Reams, and P. C. Van Deusen, Editors. General Technical Report WO-77, USDA Forest Service, Washington, D. C., USA.	October 2007
Zarnetske, P. L., T. C. Edwards, Jr., and G. G. Moisen. 2007. Habitat classification modelling with incomplete data: pushing the habitat envelope. Ecological Applications 17:1714-1726.	September 2007
Zarnetske, P. L., T. C. Edwards, Jr., and G. G. Moisen. 2007. Modeling forest bird species’ likelihood of occurrence in utah with forest inventory and analysis and landfire map products and ecologically based pseudo-absence points. USDA Forest Service General Technical Report WO-77:291-305.	July 2007
Zakrajsek, E. J., and J. A. Bissonette. 2005. Ranking the risk of wildlife species hazadous to military aircraft. Wildlife Society Bulletin 33(1):258-264	April 2005
Zakrajsek, E. J., and J. A. Bissonette. 2001. Nocturnal bird-avoidance modeling with mobil-marine radar. Bird Strike 2001:185-194.	April 2001
Wurtsbaugh, W. A., H. P. Gross, P. Budy, and C. Luecke. 2001. Effects of epilimnetic versus metalimnetic fertilization on the phytoplankton and periphyton of a mountain lake with a deep chlorophyll maxima. Canadian Journal of Fisheries and Aquatic Sciences 58:2156-2166.	January 2001
Wood, J. and P. Budy. 2009. An investigation of the early life-history and potential influences on invasion success of exotic of brown trout (Salmo trutta). Transactions of the American Fisheries Society 138:756-767.	May 2009
Wood, J. R. & Budy, P. 2007. The role of environmental factors in determining the spawning density and distribution of brown trout along an elevational gradient, pp. 251-257. In: Carline, and C. LoSapio, eds., 2007. Sustaining wild trout in a changing world; proceedings of Wild Trout IX symposium; 2007 October 9-12; West Yellowstone, Montana. 308 pages.	December 2007
Winters, L.K., P. Budy, and G.P. Thiede. 2017. Earning their stripes: the potential of tiger trout and other salmonids as biological controls of forage fishes in a western reservoir. North American Journal of Fisheries Management 34:1033–1046 Accepted 8 November, 2016. UJFM-2016-0062. USGS IP-074773.	March 2017
Winters, L. and P. Budy. 2015. Exploring crowded trophic niche space in a novel reservoir fish assemblage: how many predators is too many? Transactions of the American Fisheries Society. 144:1117-1128. USGS FSP IP-065178. \| Abstract	January 2015	Species interactions within novel fish assemblages in highly-managed reservoir systems can be difficult to predict and understand. In a high elevation Utah reservoir, USA, the unintentional introduction of Utah Chub Gila atraria and subsequent population expansion prompted managers to shift from stocking exclusively Rainbow Trout Oncorhynchus mykiss to include Tiger Trout Salmo trutta (female) x Salvelinus fontinalis (male) and Cutthroat Trout O. clarkii utah, a novel suite of top predators and potential competitors. We examined the interspecific interactions among Scofield Reservoir, Utah piscivores using a multifaceted approach including gut analyses, stable isotopes, and gape limitation studies to characterize the potential for competition and predation to occur amongst top predators. Our results suggest large Cutthroat Trout and Tiger Trout occupy a top piscivore trophic niche and are more littoral, but because food resources are not limited, competition is unlikely. In contrast, Rainbow Trout occupy an omnivore niche space and are more pelagic. Apparent survival of Rainbow Trout has declined significantly in recent years, potentially due to shared food resources or preferred feeding space with Utah Chub. In contrast, Cutthroat Trout and Tiger Trout are capable of consuming prey up to 50% of their own size, much larger than predicted based on their theoretical gape limit alone. Collectively, this research aids in understanding biotic interactions within a top-heavy and novel fish community and assists towards developing and implementing suitable management strategies to control nuisance species in valuable sport fisheries.
Wilson,T. L., J. B. Odei, M. B. Hooten, and T. C. Edwards, Jr. 2010. Hierarchical spatial models for predicting pygmy rabbit distribution and abundance. Journal of Applied Ecology 47:401-409.	April 2010
Wilson, T.L., A.P. Rayburn, and T.C. Edwards, Jr. 2012. Spatial ecology of refuge selection by an herbivore under risk of predation. Ecosphere 3:art6. http://dx.doi.org/10.1890/ES11-00247.1	January 2012
Wilson, T. L., F. P. Howe, and T. C. Edwards, Jr. 2011. Effects of sagebrush treatments on multi-scale resource selection by pygmy rabbits. Journal of Wildlife Management 75:393-398.	February 2011
Wilson, T. L., E. J. Johnson, and J. A. Bissonette. 2009. Relative importance of habitat area and isolation for bird occurrence patterns in a naturally patchy landscape. Landscape Ecology 24:351-360. \| Publisher Website	April 2009
Webber, P. A., P. Thompson, and P. Budy. 2012. Status and structure of two populations of bluehead in the Weber River, UT. Southwest Naturalist 57:267-276.	June 2012
Walsworth, T.E., and P. Budy. 2015. Integrating non-native species in niche models to prioritize native fish restoration activity locations along a desert river corridor. Transactions of the American Fisheries Society 144:667–681. USGS IP-034122.	March 2015
Walsworth, T. and P. Budy. 2021. Hydrologic controls on abundance and distribution of a highly imperiled desert fish. Canadian Journal of Fisheries and Aquatic Sciences Volume 78. doi.org/10.1139/cjfas-2020-0353. USGS FSP IP-121942. \| Abstract	May 2021	Increasing water demand, water development, and on-going climate change have driven extensive changes to the hydrology, geomorphology and biology of arid-land rivers globally, driving an increasing need to understand how annual hydrologic conditions affect the distribution and abundance of imperiled desert fish populations. We analyzed the relationship between annual hydrologic conditions and the endangered Rio Grande silvery minnow in the Middle Rio Grande, New Mexico, USA, using hurdle models to predict both presence and density as a function of integrated annual hydrologic metrics. Both presence and density were positively related to spring high flow magnitude and duration and negatively related to summer drying, as indicated by an integrated flow metric. Simulations suggest hydrologic conditions near the wettest observed in the data set would be required to meet recovery goals in a single year in all reaches. We demonstrate how the models developed herein can be used to examine alternative water management strategies, including strategies that may currently be socially and logistically infeasible to implement, to identify strategies minimizing trade-offs between conservation and other management goals.
Vinson, M., and P. Budy. 2011. Sources of variability and comparability between salmonids stomach contents and isotopic analyses: study design lessons and recommendations. Canadian Journal of Fisheries and Aquatic Sciences 68:137-151.	June 2011
Vinson, M., and P. Budy. 2011. Sources of variability and comparability between salmonids stomach contents and isotopic analyses: study design lessons and recommendations. Canadian Journal of Fisheries and Aquatic Sciences 68:137-151.	January 2011
Vatland, S., and P. Budy. 2007. Predicting the invasion success of an introduced omnivore in a large, heterogeneous reservoir. Canadian Journal of Fisheries and Aquatic Sciences 64:1329-1345.	September 2007
Vatland, S., P. Budy, and G. P. Thiede. 2008. A bioenergetics approach to modeling striped bass and threadfin shad predator-prey dynamics in Lake Powell, Utah-Arizona. Special Section: Bioenergetics Modeling. Transactions of the American Fisheries Society 137:262-277.	February 2008
Van Doren, B.M., Willard, D.E., Hennen, M., Horton, K.G., Stuber, E.F., Sheldon, D., Sivakumar, A.H., Wang, J., Farnsworth, A. and Winger, B.M., 2021. Drivers of fatal bird collisions in an urban center. Proceedings of the National Academy of Sciences, 118(24). https://doi.org/10.1073/pnas.2101666118	April 2021
Thuiller, W, T. Münkemüller, K. H. Schiffers1, S. Dullinger, V.E. Eckhart, T. C. Edwards, Jr., D Gravel, G. Kunstler, C. Merrow, K.M. O’Leary, N. E. Zimmermann, D. Zurell, and F. Schurr. 2015. Does probability of occurrence relate to population dynamics? Ecography 37:1155-1166.	January 2015
Switalski, T. A., J. A. Bissonette, T. H. DeLuca, C. H. Luce, and M. A. Madej. 2003. Wildland road removal: research needs. Pages 642-646 In 2003 Proceedings of the International Conference on Ecology and Transportation, edited by C. Leroy Irwin, Paul Garrett, and K. P. McDermott. Raleigh, NC: Center for Transportation and the Environment, North Carolina State University, 2003.	November 2003
Switalski, A., J. A. Bissonette, T. H, Deluca, C. H. Luce, and M. A. Madej. 2004. Benefits and impacts from road removal. Frontiers in Ecology and the Environment 2(1):21-28.	March 2004
Stuber, EF, BC Carlson, and B Jesmer. 2022. Many avenues for spatial personality research: a response to comments on Stuber et al. 2022. Behavioral Ecology 33(3): 492-3 DOI: 10.1093/beheco/arac018 \| Abstract	June 2022	NA
Stuber, E.F., O. Robinson, E.R. Bjerre, M.C. Otto, B.A. Millsap, G.S. Zimmerman, M. G. Brasher, K. M. Ringelman, A.M.V. Fournier, A. Yetter, J.E. Isola, V. Ruiz-Gutierrez. The potential of semi-structured citizen science data as a supplement for conservation decision-making: Validating the performance of eBird against targeted avian monitoring efforts. 270, p.109556. https://doi.org/10.1016/j.biocon.2022.109556	June 2022
Stuber, E., B. Carlson, and B. Jesmer. Spatial Personalities: a meta-analysis of consistent individual differences in spatial behavior. Behavioral Ecology. 33(3): 477-86. DOI: 10.1093/beheco/arab147 \| Abstract	June 2022	Individual variation in behavior, particularly consistent among-individual differences (i.e., personality), has important ecological and evolutionary implications for population and community dynamics, trait divergence, and patterns of speciation. Nevertheless, individual variation in spatial behaviors, such as home range behavior, movement characteristics, or habitat use has yet to be incorporated into the concepts or methodologies of ecology and evolutionary biology. To evaluate evidence for the existence of consistent among-individual differences in spatial behavior – which we refer to as “spatial personality” – we performed a meta-analysis of 200 repeatability estimates of home range size, movement metrics, and habitat use. We found that the existence of spatial personality is a general phenomenon, with consistently high repeatability (r) across classes of spatial behavior (r = 0.67 - 0.82), taxa (r = 0.31 - 0.79), and time between repeated measurements (r = 0.54 - 0.74). These results suggest: (1) repeatable spatial behavior may either be a cause or consequence of the environment experienced and lead to spatial personalities that may limit the ability of individuals to behaviorally adapt to changing landscapes; (2) interactions between spatial phenotypes and environmental conditions could result in differential reproduction, survival, and dispersal, suggesting that among-individual variation may facilitate population-level adaptation; (3) spatial patterns of species’ distributions and spatial population dynamics may be better understood by shifting from a mean field analytical approach towards methods that account for spatial personalities and their associated fitness and ecological dynamics.
Strohm, D. P. Budy, and T.A. Crowl. 2017. Matching watershed and otolith chemistry to establish natal origin of an endangered desert lake sucker. Transactions of the American Fisheries Society. TAFS 146:732-743. USGS IP-069787.	May 2017
Stout, J.B., M.M. Conner, P. Budy, P. Mackinnon, and M. McKinstry. 2020. Keeping it classy: Classification of live fish and ghost PIT tags detected with a mobile PIT tag interrogation system using an innovative analytical approach. Canadian Journal of Fisheries and Aquatic Sciences 77:1564-1573. \| Abstract	June 2020	The ability of PIT tag data to improve demographic parameter estimates has led to the rapid advancement of PIT tag systems. However, ghost tags create uncertainty about detected tag status (i.e. live fish or ghost tag) when using mobile interrogation systems. We developed a method to differentiate between live fish and ghost tags using a random forest classification model with a novel data input structure based on known fate PIT tag detections in the San Juan River, NM, CO, and UT, USA. We used our model to classify detected tags with an overall error rate of 6.8% (1.6% ghost tags error rate and 21.8% live fish error rate). The important variables for classification were related to distance moved and response to flood flows; however, habitat variables did not appear to influence model accuracy. Our results and approach allow the use of mobile detection data with confidence and allow for greater accuracy in movement, distribution, and habitat use studies, potentially helping identify influential management actions improving our ability to conserve and recover endangered fish.
Stout, J.B, M.M. Conner, P. Budy, P. Mackinnon, and M. McKinstry. 2019. We ain’t afraid of no ghosts: Tracking habitat interactions and movement dynamics of ghost tags under differing flow conditions in a sand bed river. 21 September, 2019 Accepted. North American Journal of Fisheries Management, Management Brief 39:1337-1347	September 2019
Storch, I., and J. A. Bissonette. 2003. The problem of linking scales in the use of indicator species in conservation biology. Pages 73-92 in J. A. Bissonette and I. Storch 2003. Landscape theory and resource management: Linking theory with practice. Island Press, Covelo, CA	January 2003
Stoner, D.C., J.O. Sexton, H.H. Bernales, J.R. Nagol, and T.C. Edwards, Jr. 2016. Productivity of a mountain ungulate tracks phenological variability over a latitudinal gradient. PLoS One 11(2): e0148780.	May 2016
Stoner, D. C., J. O. Sexton, D. M. Choatec, J. Nagolb, H. H. Bernalesd, S. A. Simsa, K. E. Ironsidee, K. M. Longshoref, and T. C. Edwards, Jr. 2018. Climatically driven changes in primary production propagate through trophic levels. Global Change Biology. DOI: 10.1111/gcb.14364	July 2018
Stillman, A.N., P.E. Howell, G.S. Zimmerman, E.R. Bjerre, B.A. Millsap, O.J. Robinson, D. Fink, E.F. Stuber, V. Ruiz-Gutierrez. Leveraging the strengths of citizen science and structured surveys to achieve scalable inference on population size.	October 2023
Solokas, M., Z. Feiner, R. Al-Chokhachy, P. Budy, J. Tyrell DeWeber, J. Sarvala, G.G. Sass, S.A. Tolentino, T. Walsworth, and O.P. Jensen. 2023. Shrinking body size and climate warming: Many freshwater salmonids do not follow the rule. Global Change Biology 2023;29:2478–2492. USGS FSP under Al-Chockhachy, IP-146706. \| Abstract	January 2023	Declining body size is believed to be a universal response to climate warming andhas been documented in numerous studies of marine and anadromous fishes. TheSalmonidae are a family of coldwater fishes considered to be among the most sensitivespecies to climate warming; however, whether the shrinking body size responseholds true for freshwater salmonids has yet to be examined at a broad spatial scale.We compiled observations of individual fish lengths from long-termsurveys acrossthe Northern Hemisphere for 12 species of freshwater salmonids and used linearmixed models to test for spatial and temporal trends in body size (fish length) spanningrecent decades. Contrary to expectations, we found a significant increase in lengthoverall but with high variability in trends among populations and species. More thantwo-thirdsof the populations we examined increased in length over time. Secondaryregressions revealed larger-bodiedpopulations are experiencing greater increases inlength than smaller-bodiedpopulations. Mean water temperature was weakly predictiveof changes in body length but overall minimal influences of environmentalvariables suggest that it is difficult to predict an organism's response to changingtemperatures by solely looking at climatic factors. Our results suggest that decliningbody size is not universal, and the response of fishes to climate change may be largelyinfluenced by local factors. It is important to know that we cannot assume the effectsof climate change are predictable and negative at a large spatial scale.
Sofaer, Helen R., C. S. Jarnevich, I. S. Pearse, R. Lyons Smyth, S. Auer, G. L. Cook, T. C. Edwards, Jr., G. F. Guala, T. G. Howard, J. T. Morisette, and H. Hamilton. 2019. The development and delivery of species distribution models to inform decision-making. BioScience 69:544–557. https://doi.org/10.1093/biosci/biz045	September 2019
Simonsen, V., E. Stuber, and J.J. Fontaine. (2022) Examining the effects of patch size and nest density on artificial nest survival. The Wilson Journal of Ornithology -* 134(2): 182–192. https://doi.org/10.1676/19-00063	May 2022
Schultz, R. J., T. C. Edwards, Jr., G. G. Moisen, and T. S. Frescino. 2005. Development and validation of spatially explicit habitat models for cavity-nesting birds in Fishlake National Forest, Utah. Pages 241-249 in Proceedings of the Fourth Annual Forest Inventory and Analysis Symposium, New Orlean, Louisiana, USA, R. E. McRoberts, G. A. Reams, P. C. Van Deusen, W. H. McWilliams, and C. J. Cieszewski, Editor. General Technical Report NC-252, North Central Research Station, USDAForest Service, St. Paul, Minnesota, USA.	December 2005
Schultz, R. J., T. C. Edwards, Jr., G. G. Moisen, and T. S. Frescino. 2005. Development and validation of spatially explicit habitat models for cavity-nesting birds in Fishlake National Forest, Utah. Pages 241-249 in Proceedings of the Fourth Annual Forest Inventory and Analysis Symposium, New Orlean, Louisiana, USA, R. E. McRoberts, G. A. Reams, P. C. Van Deusen, W. H. McWilliams, and C. J. Cieszewski, Editor. General Technical Report NC-252, North Central Research Station, USDAForest Service, St. Paul, Minnesota, USA.	October 2005
Saunders, W.C., P. Budy, and G. Thiede. 2014. Demographic Changes Following Mechanical Removal of Exotic Brown Trout in an Intermountain West (USA), High-Elevation Stream. Ecology of Freshwater Fish. doi: 10.1111/eff.12143. USGS FSP: IP-034361. \| Abstract	April 2014	Exotic species present a great threat to native fish conservation; however, eradicating exotics is expensive and often impractical. Mechanical removal can be ineffective for eradication, but nonetheless may increase management effectiveness by identifying portions of a watershed that are strong sources of exotics. We used mechanical removal to understand processes driving exotic brown trout (Salmo trutta) populations in the Logan River, Utah. Our goals were to: (i) evaluate the demographic response of brown trout to mechanical removal, (ii) identify sources of brown trout recruitment at a watershed scale and (iii) evaluate whether mechanical removal can reduce brown trout densities. We removed brown trout from 2 km of the Logan River (4174 fish), and 5.6 km of Right Hand Fork (RHF, 15,245 fish), a low-elevation tributary, using single-pass electrofishing. We compared fish abundance and size distributions prior to, and after 2 years of mechanical removal. In the Logan River, immigration to the removal reach and high natural variability in fish abundances limited the response to mechanical removal. In contrast, mechanical removal in RHF resulted in a strong recruitment pulse, shifting the size distribution towards smaller fish. These results suggest that, before removal, density-dependent mortality or emigration of juvenile fish stabilised adult populations and may have provided a source of juveniles to the main stem. Overall, in sites demonstrating strong density-dependent population regulation, or near sources of exotics, short-term mechanical removal has limited effects on brown trout populations but may help identify factors governing populations and inform large-scale management of exotic species.
Santos, M. J., H. M. Matos, J. A. Bissonette, and M. Santos-Reis. 2006. Poster. Riparian areas in the fragmented landscape of southern Portugal: applications for conservation planning. First European Congress of Conservation Biology, 22-26 August 2006, Eger, Hungary. (August 2006)	August 2006
Sandbach, C. J.K. Young, M.M. Conner, E. Hansen, and P. Budy. 2024. Evaluating the Influence of Beaver Dam Analogs on Beaver Translocation for Desert River Restoration. Restoration Ecology. doi: 10.1111/rec.14107 USGS FSP IP-155481. \| Abstract	February 2024	Stream restoration programs employ beaver-related restoration techniques, including beaver translocations and installation of beaver dam analogs (BDAs), to create complex in-stream habitat. Our goal was to investigate whether BDA installations improved the probability of translocated beavers surviving and colonizing a section of degraded desert river. We translocated beavers fitted with VHF and/or PIT tags to the Price River in east-central Utah, for two years before and after BDAs were installed. We monitored survival and site fidelity of VHF-tagged beavers across all four years to estimate apparent survival, using model selection to evaluate models with BDA, flow, and other factors hypothesized to be related to apparent survival. We found similar apparent survival (<i>φ</i>) eight weeks post-release of pre-BDA beavers (<i>φ </i>= 0.50 ± 0.08 SE) and post-BDA beavers (<i>φ</i> = 0.41 ± 0.06 SE). Fifteen predation-caused mortalities occurred, and 43 beavers emigrated outside of the study site. Top models indicated apparent survival was negatively related to mean flow. Of the 70 BDAs that were constructed, we observed signs of beaver activity on two structures and the number of intact natural dams decreased due to monsoon floods. Our results suggest BDAs may not improve survival or site fidelity of translocated beavers in desert river systems. However, the negative relationship between flow and apparent survival suggests survival or fidelity may be improved if beaver translocations are timed to avoid high-flow events. Additional research is needed to understand how habitat, individual behavior, and resident conspecifics influence beaver translocation success.
Salant, N.L., J. C. Schmidt, P. Budy, P. R. Wilcock. 2012. Unintended consequences of restoration: Loss of riffles and gravel substrates following weir installation. Journal of Environmental Management 109:154-163.	June 2012
Ruiz‐Gutierrez, V., Bjerre, E.R., Otto, M.C., Zimmerman, G.S., Millsap, B.A., Fink, D., Stuber, E.F., Strimas‐Mackey, M. and Robinson, O.J., 2021. A pathway for citizen science data to inform policy: A case study using eBird data for defining low‐risk collision areas for wind energy development. Journal of Applied Ecology, 58(6), pp.1104-1111. https://doi.org/10.1111/1365-2664.13870	April 2021
Roug, A., E. Doden, T. Griffin, J. Young, X. Waldem, N. Norman, P. Budy, and A.J. Van Wettere. 2022. Health screening of American beavers (Castor canadensis) in Utah, USA. Journal of Wildlife Diseases, Short Communications. DOI: 10.7589/JWD-D-22-00020. USGS FSP IP-139356.	August 2022
Rosa, S., and J. A. Bissonette. 2007. Roads and desert small mammal communities: Positive interaction? Pages 562-566 IN Proceedings of the 2007 International Conference on Ecology and Transportation (ICOET), C. L. Irwin, D. Nelson, and K. P. McDermott. Raleigh NC. : Center for Transportation and the Environment, North Carolina State University, 2007. Little Rock, AR.	October 2007
Ripplinger, J., J. Franklin, and T.C. Edwards, Jr. 2015. Legacies of managed disturbance leave semi-arid plant communities with reduced resilience and altered composition. Journal of Vegetation Science 26:923-933.	July 2016
Remiszewski,T.T., P. Budy, and W. W. Macfarlane. In review. Examining the Impacts of Extreme Geomorphic Change on Habitat Diversity in a Historically Degraded Desert River. Submitted to River Research and Applications. DOI: 10.1002/rra.4213. USGS FSP IP: 147695. \| Abstract \| Download	September 2023	Widespread hydrologic alterations have simplified in-stream habitats in rivers globally, driving population declines and local extirpations of many native fishes. Here, we examine how extreme geomorphic change in a historically degraded desert river has impacted habitat diversity and persistence. Due to the introduction of a sediment plug from a tributary wash in 2010, a large reach of the degraded and simplified San Rafael River, Utah, began to actively change from a single-thread channel to a complex, multi-threaded riverscape. We combined field measurements and drone-collected imagery to document habitat changes due to this new habitat feature and monitored habitat use by native and endemic fishes. Our results demonstrate the habitat feature is more diverse than any other stream reach along the lower SRR, with reaches located at the edge of the expanding wash feature containing 17% more complex habitat (e.g., pools, riffles, backwaters) on average than reference reaches, and containing 641% more diverse habitat overall than 5 years prior to the start of our study. The wash feature is also retaining water for periods beyond what is expected during seasonal drying, with the total extent of inundation within the riverscape increasing by over 2,800%. Since the formation of the 2010 sediment plug, riparian habitat has increased by 230% since 2009, and channel networks have expanded from a single thread channel to more than 50 distinct channels throughout the sediment plug’s zone of influence. These results will inform management and conservation of habitat for imperiled desert fishes and encourage the use of process-based restoration tools such as “low-tech” habitat restoration in order to mitigate the impacts of simplification and increase habitat persistence in the face of increasing aridity in the desert Southwest.
Petrosky, C. E., H. A. Schaller, and P. Budy. 2001. Evaluation of survival trends in the freshwater spawning and rearing life stage for Snake River spring/summer chinook. Canadian Journal of Fisheries and Aquatic Sciences 58:1196-1207.	September 2001
Pennock, C.A., W.C. Saunders, and P. Budy. 2022. High densities of conspecifics buffer native fish from negative interactions with an ecologically similar invasive. Biological Invasions https://doi.org/10.1007/s10530-021-02725-y. USGS FSP IP-130496. \| Download	January 2022
Pennock, C.A., P. Budy, and N. Barrett. 2021. Effects of increased temperature on arctic fish is mediated by food availability: Implications for climate change. Freshwater Biology 66:549-561. DOI: 10.1111/fwb.13659. USGS FSP ID-121940. \| Download	March 2021
Pennock, C.A., Budy P, Macfarlane, WW. 2022. Effective conservation and restoration of desert riverscapes requires conservation and restoration of in-stream flows with rehabilitation approaches tailored to water availability. Invited: Frontiers in Environmental Science 10:870488. doi: 10.3389/fenvs.2022.870488. USGS FSP IP- 138466. \| Abstract	May 2022	Desert riverscape restoration practitioners must contend with compounding effects of increasing human water demand, persistent drought, nonnative species establishment, and climate change, which further stress desert riverine ecosystems such as rivers in the Colorado River basin, USA. Herein, we provide our perspective on the importance of natural flows, large floods in particular, for successful conservation and restoration of riverscapes. We present ideas developed from our experience with restoration projects across multiple desert tributary rivers with varying levels of habitat degradation and water abstraction. We propose broad-scale measures such as protection of in-stream flows, tailoring restoration efforts to available annual water availability, and working with nature using low-tech process-based techniques to more completely address the mechanisms of habitat degradation, such as flow reduction and vegetation-induced channel narrowing. Traditionally, restoration efforts in the Colorado River basin take place at relatively fine-scales, at convenient locations and, largely focus on reducing nonnative plant and fish species. We suggest that we need to think more broadly and creatively, and that conservation or restoration of natural flow regimes is crucial to long-term success of almost all management efforts for both in-stream and riparian communities.
Pennock, C.A, L. Bruckerhoff, K.B. Gido, A.L. Barkalow, M.J. Breen, P. Budy, W.W. Macfarlane, and D.L. Propst. 2022. Failure to achieve recommended environmental flows coincides with declining fish populations: Long-term trends in regulated and unregulated rivers. Freshwater Biology https://doi.org/10.1111/fwb.13966. USGS FSP IP- 134441 (LB). \| Abstract	July 2022	Dams can be operated to mimic components of the natural flow regime to minimize impacts on downstream ecosystems. However, infrastructure, societal needs, and watershed runoff constrain which and when flow regime attributes can be mimicked. We compared fish assemblage responses, including native and nonnative species, over two decades of managed environmental flows to those in a river retaining a relatively natural flow regime. Both of these arid-land rivers are within the Colorado River basin and have experienced declines in watershed runoff over the past twenty years. We predicted fish-flow relationships would be conserved across time and between managed and unmanaged rivers. Declines in flow in both rivers coincided with declines in some native fishes, and more native and nonnative fish species exhibited declines in the managed river than in the unmanaged river. Our ability to detect previously documented native fish-flow relationships diminished in the managed river system because established environmental flow targets were not met due to water management, but we detected these fish-flow relationships in the unmanaged river. Our results suggest declining watershed runoff and increased consumptive water use could reduce the effectiveness of environmental flows that have lower priority in most years.
Pennock, C., P. Budy, W.W. Macfarlane, M.J. Breen, J. Jimenez, and J.C. Schmidt. 2021. Native fish need a natural flow regime, not more water development. Fisheries, ‘Perspectives’ Article 47:118-123. DOI: 10.1002/fsh.10703. USGS FSP IP-130996.	November 2021
Pennock, C. A., P. Budy, S. A. Bonar, T. E. Dowling, K. B. Gido, E. I. Gilbert, B. R. Kesner, C. P. Paukert, M. C. Quist, J. Stahli, T. F. Turner, and D. L. Ward. 2022. Assessment of potential augmentation and management strategies for Razorback Sucker Xyrauchen texanus in Lake Mead and Grand Canyon: A Science Panel Summary. (No FSP possible).	April 2022
Pennock CA, Ahrens ZT, McKinstry MC, Budy P, Gido KB. 2021. Trophic niches of native and nonnative fishes along a river-reservoir continuum. Scientific Reports 11:12140 (2021). https://doi.org/10.1038/s41598-021-91730-1 \| Download	June 2021
O. Robinson, J. Socolar, E. F. Stuber, T. Auer, A. Berryman, P. H. Boersch-Supan, D. Brightsmith, A. Burbidge, S. Butchart, C. L. Davis, A. M. Dokter, A. S. Di Giacomo, A. Farnsworth, D. Fink, W. M. Hochachka, P. E. Howell, F. A. La Sorte, A. C. Lees, S. Marsden, R. Martin, R. O. Martin, J. F. Masello, E. T. Miller, Y. Moodley, A. Musgrove, D. Noble, V. Ojeda, P. Quillfeldt, J. A. Royle, V. Ruiz-Gutierrez, J. L. Tella, P. Yorio, C. Youngflesh, A. Johnston. Extreme uncertainty and unquantifiable bias do not inform population sizes. Proceedings of the National Academy of Sciences 119 (10) e2113862119 https://doi.org/10.1073/pnas.2113862119	March 2022
Neupane, R.C., J.A. Powell, and T.C. Edwards. 2021. Connecting regional-scale tree distribution models with seed dispersal kernels. Applied Mathematics and Computation. https://doi.org/10.1016/j.amc.2021.126591	August 2021
Nagol, J. R., J. O. Sexton1, A. Anand, R. Sahajpal, and T. C. Edwards, Jr. 2017. Extraction of end-member phenology by spectral unmixing. International Journal of Digital Earth. DOI: 10.1080/17538947.2017.1319975	May 2017
N.A. Pershyn, E.M. Gese, E.F. Stuber, and B.M. Kluever. Coyotes in the Great Basin Desert Do Not Exhibit a Spatial Response Following Removal of Anthropogenic Water Sources. Journal of Arid Environments - Submitted	February 2024
Murphy, B., T. Walsworth, P. Belmont, M.M. Conner, and P. Budy. 2020. Dynamic Habitat Disturbance and Ecological Response (DyHDER)-PVA: modeling fish population dynamics in response to landscape disturbance. Ecosphere 11(1):e03023. 10.1002/ecs2. 3023. USGS FSP IP-110023.	January 2020
Moisen, G. G., and T. C. Edwards, Jr. 1999. Use of generalized linear models and digital data in a forest inventory of northern Utah. Journal of Agricultural, Biological and Environmetal Statistics 4:164-182.	November 1999
Moisen, G. G., D. R. Cutler, and T. C. Edwards, Jr. 1999. Genralized linearmixed models for analysizing error in a satellite-based vegation map of Utah. Pages 37-44 in H. T. Mowrer and R. G. Congalton, Editors. Quantifying spatial unceratinty in natural resorces. Theory and applications for GIS and remote sensing, Ann Arbor Press, Chelsea, Michigan, USA.	November 1999
Moisen G. G., T. C. Edwards, Jr., and P. E. Osborne. 2006. Further advances in predicting species distributions. Ecological Modelling 199:129-131	September 2007
Moisen G. G., E. A. Freeman, J. A. Blackard, T. S. Frescino, N. E. Zimmermann, and T. C. Edwards, Jr. Moisen G. G., E. A. Freeman, J. A. Blackard, T. S. Frescino, N. E. Zimmermann, and T. C. Edwards, Jr. 2006. Predicting tree species presence and basal area in Utah: a comparison of stochastic gradient boosting, generalized additive models, and tree-based methods. Ecological Modelling 199:176-187.	September 2007
Mirochnitchenko, N., E. Stuber, and J.J. Fontaine. 2021. Biodiversity scale-dependence, and opposing multi-level covariance lead to mismatches among taxonomic, phylogenetic, and functional diversity. Journal of Biogeography, 48, 2989– 3003. https://doi.org/10.1111/jbi.14248	January 2022
Miller, S.W., P. Budy, and J.C. Schmidt. 2010. Quantifying macroinvertebrate responses to in-stream habitat restoration: applications of meta-analysis to river restoration. Restoration Ecology 18:8-19.	January 2010
Meyers, P., W. D. Ostrand, M. Conover, and J. A. Bissonette. 2005. Effect of perch sites on mourning dove nest distribution. Western North American Naturalist 65(1):64-69.	October 2004
Meyers, P. M., W. D. Ostrand, M. R. Conover, and J. A. Bissonette. 2006. Assessing differences in mourning dove Zenaida macroura marginella nesting activity after 40 years. Wildlife Biology 12(2):171-178. (June 2006)	June 2006
Merow, C., M J. Smith, W. Thuiller, N. E. Zimmermann, T. C. Edwards, Jr., A. Guisan, S. Normand, R. Wüest, and J. Elith. 2015. What do we gain from simplicity versus complexity in species distribution models? Ecography 37:1267-1281.	January 2016
Meredith, C.S., P. Budy, and M. Hooten, and M. O. Prates. 2016. Assessing abiotic conditions influencing the longitudinal distribution of exotic brown trout in a mountain stream: a spatially-explicit modeling approach. Biological Invasions. DOI 10.1007/s10530-016-1322-z. USGS IP-069503 \| Abstract	November 2016	Trout species often segregate along elevational gradients, yet the mechanisms driving this pattern are not fully understood. On the Logan River, Utah, USA, exotic brown trout (Salmo trutta) dominate at low elevations but are near-absent from high elevations with native Bonneville cutthroat trout (Onchorhynchus clarkii utah). We used a Bayesian, spatial modeling approach to evaluate abiotic conditions (describing mechanisms related to temperature and physical habitat) potentially influencing the distribution of brown trout in this system. We also considered the influence of propagule pressure, including the intensity of past stocking pressure and distance from a concentrated stocking area. The distribution of brown trout was best explained by models describing: 1) average summer temperature interacting with unit stream power, our measure of gravel availability for spawning (R2=0.54), and 2) the prevalence of anchor ice between each reach and a high-intensity stocking area, also interacting with our measure of gravel availability (R2=0.52). Based on these findings, effects of cold summer temperatures on age-0 survival and/or the lack of movement upstream due to anchor ice are likely mechanisms contributing to low abundance of brown trout at high elevations. The potential role of anchor ice in affecting longitudinal distributions of brown trout has not been well-explored in other research. These findings have implications for future brown trout expansion upstream given some evidence suggesting anchor ice prevalence on the Logan River has decreased significantly over the last several decades, likely in response to climatic changes.
Meredith, C., P. Budy, and G.P. Thiede. 2014. Predation on native sculpin by exotic brown trout exceeds that by native cutthroat trout within a mountain watershed (Logan, UT, USA) doi: 10.1111/eff.12134. USGS FSP: IPDS: IP-042175. \| Abstract	April 2014	We explored potential negative effects of exotic brown trout (Salmo trutta) on native sculpin (Cottus sp.) on the Logan River, Utah, USA by (i) examining factors most strongly correlated with sculpin abundance (e.g., abiotic conditions or piscivory?), (ii) contrasting the extent of brown trout predation on sculpin with that by native cutthroat trout (Oncorhynchus clarkii utah) and (iii) estimating the number of sculpin consumed by brown trout along an elevational gradient using bioenergetics. Abundance of sculpin across reaches showed a strong (r ≥ 0.40) and significant (P < 0.05) correlation with physical variables describing width (positive) and gradient (negative), but not with abundance of piscivorous brown trout or cutthroat trout. In mainstem reaches containing sculpin, we found fish in 0% of age-1, 10% of age-2 and 33% of age-3 and older brown trout diets. Approximately 81% of fish consumed by brown trout were sculpin. Despite a similar length–gape relationship for native cutthroat trout, we found only two fish (one sculpin and one unknown) in the diets of native cutthroat trout similar in size to age-3 brown trout. Based on bioenergetics, we estimate that an average large (> 260 mm) brown trout consumes as many as 34 sculpin per year. Nevertheless, results suggest that sculpin abundance in this system is controlled by abiotic factors and not brown trout predation. Additional research is needed to better understand how piscivory influences brown trout invasion success, including in-stream experiments exploring trophic dynamics and interactions between brown trout and native prey under different environmental conditions.
Meredith, C. P. Budy, and J Schmidt. 2018. Investigating scour depths in relation to patterns of spawning brown trout and the changing physical template of a mountain river. Submitted to River Research and Applications, 28 December, 2017. USGS FSP: \| Abstract	January 2018	In the Intermountain West, USA, eggs and fry of fall-spawning brown trout are susceptible to scour-related mortality because they are still in the gravel during spring snowmelt run-off events. The goal of our research was to understand patterns of gravel scour on the Logan River, Utah in relation to brown trout spawning preferences and whether mobility of spawning gravels could explain the absence of brown trout from higher elevations. We collected data to characterize local and reach-scale potential for spawning gravel scour (i.e., “entrainment potential”) at representative reaches along a longitudinal gradient during 2009 and 2010 spring flood events. We also used scour chains to measure scour depth at spawning locations. The flood magnitude in both years approximated the 2-year flood magnitude, but the flood in 2009 was much longer in duration. Scour at 27% of scour chain locations exceeded our estimated median depth of developing fry in 2009, while scour at 0% of locations exceeded this depth in 2010. Fewer low-gradient reaches were present in the upstream, non-canyon sections. However, across all reaches, we found that brown trout preferentially chose locations in channel margins for spawning, which tended to have low entrainment potential. These local estimates of entrainment potential predicted scour depth better than reach-scale estimates or broad-scale patterns of geomorphology. Some of the greatest scour depths were measured in the backwaters of a dam, a location with low entrainment potential but potentially greater sediment supply. Our findings suggest that spawning gravel scour is not limiting brown trout abundance at high elevations in this system given shallow scour depths overall and selection of low-scour areas for spawning.
Meier, E. S., T C. Edwards Jr, F. Kienast, M. Dobbertin, and N. E. Zimmermann. 2011. Co-occurrence patterns of trees along macro-climatic gradients and their potential influence on the present and future distribution of Fagus sylvatica L. Journal of Biogeography 38:371-382.	February 2011
McLaren, J. S., R. W. Van Kirk, A. J. Mabaka, S. Brothers, and P. E. Budy. 2023. Drawdown, habitat, and kokanee Oncorhynchus nerka populations in a western U.S. reservoir. North American Journal of Fisheries Management. DOI: 10.1002/nafm.10879. USGS FSP IP- 136834. \| Abstract	January 2023	Increased drought frequency and severity due to climate change can compound development pressures on water storage reservoirs throughout the western U.S. with uncertain effects on economically and ecologically valuable fisheries. Island Park Reservoir is a mid-sized hypolimnetic-release water storage reservoir on the Henrys Fork River in Idaho that supports a popular sport fishery for kokanee <i>Oncorhynchus nerka</i>. A region-wide drought in 2021 provided an opportunity to use Island Park Reservoir as a case study to examine how drought-induced drawdown affects kokanee habitat. We hypothesized that drawdown reduces the volume of water in the reservoir featuring “optimal” water quality for kokanee. We monitored water quality at five locations in Island Park Reservoir from spring turnover to fall turnover, from which we calculated the approximate volume of “optimal” (<17 C, >5 mg/L O<sub>2</sub>), “survivable” (<20C, >3 mg/L O<sub>2</sub>), and “lethal” (>20 C, <3 mg/L O<sub>2</sub>) conditions for kokanee. We found severe drawdown had a disproportionately negative impact on kokanee habitat availability. Although there was spatial and temporal heterogeneity in the availability of optimal and survivable conditions, drawdown for downstream water supply was the central mechanistic driver of declines in optimal and survivable conditions. Our findings explain interannual patterns in long-term kokanee spawning run return numbers, which were higher with higher reservoir carryover. Water conservation and precision management in the Henrys Fork watershed saved ~39 million m<sup>3 </sup>(32,000 acre-feet) in Island Park Reservoir in 2021, resulting in a ~150% increase in future spawning kokanee numbers from ~250 to ~650 in the 4,500 m study reach. Our study highlights the effects of drawdown on fisheries in water storage reservoirs and illustrates the degree to which hydrologic management, including projects to reduce water consumption, can benefit reservoir fish populations.
McIntosh, A., P.A. McHugh, and P. Budy. 2011. Brown Trout, Chapter 24, In: Handbook of Global Freshwater Invasive Species (a summary of the current state of knowledge of 30 of the most notable global invasive freshwater species). Invited BOOK Chapter. (http://www.earthscan.co.uk/).	October 2011
McHugh, P., and P. Budy. 2006. Experimental effects of nonnative brown trout on the individual- and population-level performance of native cutthroat trout. Transactions of the American Fisheries Society 135:1441-1455.	November 2006
McHugh, P., and P. Budy. 2005. An experimental evaluation of competitive and thermal effects on brown trout (Salmo trutta) and cutthroat trout (Oncorhynchus clarki utah) performance along an altitudinal gradient. Canadian Journal of Fisheries and Aquatic Sciences 62:2784-2795.	July 2005
McHugh, P., and P. Budy. 2005. A comparison of visual measurement-based techniques for quantifying cobble embeddedness and fine sediment levels in salmonid-bearing streams. North American Journal of Fisheries Management 25:1208-1214.	January 2005
McHugh, P., and P. Budy. 2004. Patterns of spawning habitat selection and site suitabilityfor two populations of Snake River spring chinook salmon. Transactions of the American Fisheries Society, 133: 89-97.	January 2004
McHugh, P., P. Budy, and H. Schaller. 2004. A model-based assessment of the potential response of Snake River spring/summer chinook salmon to habitat improvements. Accepted to Transactions of the American Fisheries Society. 133:622-638.	September 2004
McHugh, P., P. Budy, G. P. Thiede, and E. VanDyke. 2008. Trophic relationships of nonnative brown trout, Salmo trutta, and native Bonneville cutthroat trout, Oncorhynchus clarkii utah, in a northern Utah, U. S. A. river. Environmental Biology of Fishes 81(1):63-75.	January 2008
McHugh, P., A. McIntosh, S. Howard, and P. Budy. 2012. Niche flexibility and trout-galaxiid co-occurrence in a hydrologically-diverse riverine landscape. Biological Invasions doi:10.1007/s10530-012-0237-6.	June 2012
McHugh, P., A. McIntosh, S. Howard, and P. Budy. 2012. Niche flexibility and trout-galaxiid co-occurrence in a hydrologically-diverse riverine landscape. Biological Invasions doi:10.1007/s10530-012-0237-6.	June 2012
McClure, M. F., J. A. Bissonette, and M. R. Conover. Migratory strategies, fawn recruitment, and winter habitat use by urban and rural mule deer (Odocoileus hemionus). 2005. European Journal of Wildlife Research. In Press. Published Online First 11 May 2005.	February 2005
Loureiro, F., J. A. Bissonette, D. W Macdonald, and M. Santos-Reis. 2009. Temporal variation in availability of Mediterranean food resources: Do badgers track them? Wildlife Biology 15:197-206. . \| Publisher Website	April 2009
Lobón‐Cerviá, J. , G. González, and P. Budy. 2011. Factors driving spatial and temporal variation in production and production ⁄ biomass ratio of stream-resident brown trout (Salmo trutta) in Cantabrian streams. Freshwater Biology 56:2272-2287.	November 2011
Lobón-Cerviá, J. , P. Budy, and E. Mortensen. 2012. Patterns of natural mortality in stream-living Brown Trout (Salmo trutta L.). Freshwater Biology 57:575-588.	June 2012
Leidolf and J. A. Bissonette. 2009. The effects of fire on avian communities: spatio-temporal attributes of the literature 1912-2003. International Journal of Wildland Fire 18(1) Article ID: WF08019 \| Publisher Website	July 2009
Lawler, J. J., and T. C. Edwards, Jr. 2006. A variance-decomposition approach to investigating multi-scale habitat associations. Condor 108:47-58.	June 2006
Lawler, J. J., and T. C. Edwards, Jr. 2002. Landscape patterns as predictors of nesting habitat: a test using four species of cavity-nesting birds. Landscape Ecology 17:233-245.	September 2002
Lawler, J. J., and T. C. Edwards, Jr. 2002. Composition of cavity-nesting bird communities in montane aspen woodland fragments: the roles of landscape context and forest structure. Condor 104:890-896.	January 2003
Laub, B.G., and P. Budy. 2015. Assessing the likely effectiveness of multi-species management for imperiled desert fishes using niche overlap analysis. Conservation Biology. DOI: 10.1111. \| Abstract	January 2015	A critical decision in species conservation is whether to target individual species or a complex of ecologically similar species. Management of multispecies complexes is likely to be most effective when species share similar distributions, threats, and response to threats. We used niche overlap analysis to assess ecological similarity of 3 sensitive desert fish species currently managed as an ecological complex. We measured the amount of shared distribution of multiple habitat and life history parameters between each pair of species. Habitat use and multiple life history parameters, includingmaximum body length, spawning temperature, and longevity, differed significantly among the 3 species. The differences in habitat use and life history parameters among the species suggest they are likely to respond differently to similar threats and that most management actions will not benefit all 3 species equally. Habitat restoration, frequency of stream dewatering, non-native species control, and management efforts in tributaries versus main stem rivers are all likely to impact each of the species differently. Our results demonstrate that niche overlap analysis provides a powerful tool for assessing the likely effectiveness of multispecies versus single-species conservation plans. Keywords: Catostomus discobolus, Catostomus latipinnis, ecological similarity, Gila robusta, habitat
Laub, B.G., G.P. Thiede, W.W. MacFarlane, and P. Budy. 2018. Evaluating the conservation potential of tributaries for native fish in the Upper Colorado River Basin. Fisheries, Feature Article 43:194-206. DOI: 10.1002/fsh.10054. USGS IP: 081178.	January 2018
Laub, B. G., J. Jimenez, and P. Budy. 2015. Adopting science-based restoration in practice: application to a desert river system. Environmental Management ONLINE FIRST: DOI 10.1007/s00267-015-0481-5. USGS IP-053441. \| Abstract	April 2015	Persistence of many desert river species is threatened by a suite of impacts linked to water infrastructure projects that provide human water security where water is scarce. Many desert rivers have undergone regime shifts from spatially and temporally dynamic ecosystems to more stable systems dominated by homogenous physical habitat. Restoration of desert river systems could aid in biodiversity conservation, but poses formidable challenges due to multiple threats and the infeasibility of recovery to pre-development conditions. The challenges faced in restoring desert rivers can be addressed by incorporating scientific recommendations into restoration planning efforts at multiple stages, as demonstrated here through an example restoration project. In particular, use of a watershed- scale planning process can identify data gaps and irreversible constraints, which aid in developing achievable restoration goals and objectives. Site-prioritization focuses limited the resources for restoration on areas with the greatest potential to improve populations of target organisms. Investment in research to understand causes of degradation, coupled with adoption of a guiding vision is critical for identifying feasible restoration actions that can enhance river processes. Setting monitoring as a project goal, developing hypotheses for expected outcomes, and implementing restoration as an experimental design will facilitate adaptive management and learning from project implementation. Involvement of scientists and managers during all planning stages is critical for developing process- based restoration actions and an implementation plan to maximize learning. The planning process developed here provides a roadmap for use of scientific recommendations in future efforts to recover dynamic processes in imperiled riverine ecosystems.
Larsen, R. T., J. A. Bissonette, J. T. Flinders, and A. C. Robinson. 2011. Does small-perimeter fencing inhibit antelope and mule deer use of free water? Journal of Wildlife Management 75(6):1417-1425.	April 2011
Larsen, R. T., J. A. Bissonette, J. T. Flinders, M. B. Hooten. (2010). Summer spatial patterning of chukars in relation to free water in western Utah. Landscape Ecology 25:135-145. DOI 10.1007/s10980-009-9407-z \| Publisher Website	March 2010
LaPlanche, C. A. Elger, F, Santoul, G.P. Thiede, and P. Budy. 2018. Forecasting the eradication success of an exotic fish from an alpine stream. Biological Conservation 223:34-46. doi.org/10.1016/j.biocon.2018.04.024. USGS FSP: IP-XX. \| Abstract	January 2018	Management actions aimed at eradicating exotic fish species from riverine ecosystems can be better informed by forecasting abilities of mechanistic models. We illustrate this point with an example of the Logan River, Utah, originally populated with endemic cutthroat trout (Oncorhynchus clarkii utah), which compete with exotic brown trout (Salmo trutta). The coexistence equilibrium was disrupted by a large scale, experimental removal of the exotic species in 2009-2011 (on average, 8.2% of the stock each year), followed by a increase in the density of the native species. We built a spatially-explicit, reaction-diffusion model encompassing four key processes: habitat heterogeneity, competition, dispersal, and a management action. The model was calibrated with detailed long-term monitoring data collected along the 35-km long river main channel since 2001. Our model, although simple, did a remarkable job reproducing the system steady state prior to management. Insights gained from the model predictions are that the exotic species is more competitive; however, the native species still occupies more favorable habitat and has superior growth. Dynamic runs of the model also recreated the increase of the native species following the management action, with two possible distinct outcomes: recovery or suppression/eradication of the exotic species. The processing of available knowledge using Bayesian methods allowed us to conclude that the chance for suppression/eradication of the invader was 15.4%. We show that accessible mathematical and numerical tools can provide highly informative insights for managers (e.g., outcome of their conservation actions), identify knowledge gaps as well as provide testable theory for researchers.
Klobucar, S.L., and P. Budy. 2020. Trophic structure of apex fish communities in closed versus leaky lakes of arctic Alaska. Oecologia Early Online. doi.org/10.1007/s00442-020-04776-9. USGS FSP IP-109849. \| Abstract	October 2020	With low species diversity and primary production across arctic lakes, trophic structure (e.g., top predator species, predator size) is surprisingly variable. We investigated trophic structure in lakes of arctic Alaska containing arctic char <i>Salvelinus alpinus</i> using predator diets and stable isotopes in two geographically-close but hydrologically-distinct lake clusters to investigate how these fishes may interact and compete for limited food resources. Aside from different lake connectivity patterns (‘leaky’ versus ‘closed’), differing fish communities (up to five versus only two species) between lake clusters allowed us to test food web hypotheses including: 1) arctic char are more piscivorous, and thereby grow larger and obtain higher trophic positions, in the presence of other fish species; and, 2) across arctic char size classes, resource polymorphism is more prominent, and thereby trophic niches are narrower and overlap less, in the absence of other predators. Regardless of lake cluster, we observed little direct evidence of arctic char consume other fishes, but char were larger (mean TL = 468 vs. 264 mm) and trophic position was higher (mean TP = 4.0 vs 3.8 for large char) in lakes with other fishes. Further, char demonstrated less intraspecific overlap when other predators were present whereas niche overlap was up to 100% in closed, char only lakes. As hydrologic characteristics (e.g., lake connectivity, water temperatures) will change across the Arctic owing to climate change, our results provide insight regarding potential concomitant changes to fish interactions and increase our understanding of lake trophic structure to guide management and conservation goals.
Klobucar, S.L., W.C. Saunders, and P. Budy. 2016. A Lota lota consumption: trophic dynamics and niche space influence of invasive Burbot in a valuable sport fishery. Transactions of the American Fisheries Society. Submitted 3 March, 2016, Accepted with minor revision 25 May, 2016. DOI: 10.1080/00028487.2016.1227372. USGS FSP: IP-074691.	January 2016
Klobucar, S.L., T.W. Rodgers, and P. Budy. 2017. At the forefront: evidence of the applicability of using environmental DNA to quantify the abundance of fish populations in natural lentic waters with additional sampling considerations.	August 2017
Klobucar, S.L., J.W. Gaeta, and P. Budy. 2018. A changing menu in a changing climate: using experimental and long-term data to predict invertebrate prey biomass and availability in arctic lakes. Freshwater Biology 2018:1-13. DOI: 10.1111/fwb.13162. USGS FSP: IP-087907.	January 2018
Klobucar, S.L., J.A. Rick, E.G. Mandeville, C.E. Wagner, and P. Budy. 2021. Investigating the morphological and genetic diversity of arctic char (Salvelinus alpinus) populations in distinct groups of foothill lakes in arctic Alaska. Ecology and Evolution. DOI: 10.1002/ece3.7211.	December 2020
Klobucar, S. and P. Budy. 2016. Consequences of seasonal variation in reservoir water level for predatory fishes: linking visual foraging and prey densities. Canadian Journal of Fisheries and Aquatic Sciences 73: 53-6464. USGS FSP: IP-058204.	January 2016
Kienast Felix, Gosteli Selina, Edwards, Thomas C., Jr., Martius Gregor. Lessons learned from the first worldwide accessible e-learning in Landscape Ecology. Published, Landscape Online 83 https://doi.org/10.3097/LO.202083	October 2020
Johnson, J. A., B. A. Andres, and J. A. Bissonette. 2008. Birds of the Major Mainland Rivers of Southeastern Alaska. Gen. Tech. Rep. PNW-GTR-739. Portland, OR: U. S. Department of Agriculture, Forest Service, Pacific Northwest Research Station. 87 p.	February 2008
Ironside, K.E, D. Mattson, D. Choate, D. Stoner, T. Arundel, J. Hansen, T. Theimer, B. Holton, B. Jansen, J.O. Sexton, K. Longshore, and T.C. Edwards, Jr. 2017. Variable Terrestrial GPS Telemetry Detection Rates: Addressing the Probability of Successful Acquisitions. Wildlife Society Bulletin 41:329-341. DOI: 10.1002/wsb.758	May 2017
Ironside, K. E., D. J. Mattson, T. Theimer, B. Jansen, B. Holton, T. Arundel, M. Peters, J. O. Sexton, and T. C. Edwards, Jr. 2017. Quantifying animal movement for caching foragers: The path identification index (PII) and cougars, Puma concolor. Movement Ecology 5:24. DOI 10.1186/s40462-017-0115-z	November 2017
Ironside, K. E,. D. J. Mattson, T. Arundel1, Tad Theimer, B. Holton, M. Peters, T. C. Edwards, Jr., and J. Hansen. 2018. Geomorphometry in Landscape Ecology: Issues of Scale, Physiography, and Application. Environment and Ecology Research 6(5): 397-412. DOI: 10.13189/eer.2018.060501	May 2018
Hunter, L. M., M. de J. Gonzalez, R. E. Toth, T. C. Edwards, Jr., and R. J, Lilieholm. 2003. Population and development in the California Mojave Desert: natural habitat implications of alternative futures. Population Research and Policy Review 22:373-397.	December 2003
Hough-Snee, N. Roper, B.R., Wheaton, J.M., and P. Budy. 2013. Riparian vegetation communities change rapidly following passive restoration at a northern Utah stream. Ecological Engineering 58:371-377. \| Abstract	July 2013	Riparian vegetation may recover quickly from disturbance when the disturbance vector is removed or reduced. Grazing is a disturbance that removes plant biomass through herbivory, while overgrazing is a more severe disturbance that can deplete plant propagule pools and inhibit plant community recovery. We tested the hypothesis that riparian vegetation communities can shift quickly from ruderal grasslands to hydrophytic shrubs and graminoids when grazing is largely eliminated from riparian areas. We used a before-after-control study design to collect vegetation community data at six restored reaches and two grazed control reaches prior to and immediately following the construction of a cattle exclosure. We identified trends in Carex and Salix species abundance and quantified shifts in riparian vegetation community composition across time at each reach using PERMANOVA, multi-level pattern analysis and non-metric multidimensional scaling. Vegetation composition changed rapidly in the four years following removal of grazing disturbance. Indicator species for all impact reaches shifted away from grazing tolerant graminoids and forbs, and toward hydrophytic graminoid and shrub species. Over the same timespan control reach indicator species remained grazing-tolerant graminoids and forbs. There was little change in Salix abundance over time at control or impact reaches but Carex abundance increased at restored reaches. We conclude that herbaceous plant communities may recover rapidly following the removal of grazing disturbance, but that woody species may lag in recovery without active vegetation manipulation. We postulate that low woody-species recruitment may affect the potential of the riparian zone to quickly shade stream channels and facilitate undercut bank formation, common riparian restoration objectives. To prevent halted riparian succession, designers should proactively identify potential limitations to woody vegetation colonization. We close discussing active approaches to overcome stalled riparian ecosystem development and suggest metrics for assessing woody species recovery.
Homel, K., and P. Budy. 2008. Temporal and spatial variability in the migration patterns of juvenile and subadult bull trout (Salvelinus confluentus) in Northeast Oregon. Transactions of the American Fisheries Society 137:869-880.	May 2008
Homel, K., P. Budy, M. E. Pfrender, T. A. Whitesel, and K. Mock. 2008. Evaluating genetic structure among resident and migratory forms of bull trout (Salvelinus confluentus) in Northeast Oregon. Ecology of Freshwater Fish, OnlineEarly Articles: doi:1-. 1111/j. 160-0633. 2008. 00299. x.	January 2008
Heredia, N. and P. Budy. 2018. Trophic ecology of Lahontan Cutthroat Trout Oncorhynchus Clarkii Henshawi: historical predator-prey interaction supports native apex predator in unique desert lake. Transactions of the American Fisheries Society. 147:842–854, DOI: 10.1002/tafs.1006. USGS FSP: IP-066465. \| Abstract	January 2018	Pyramid Lake, Nevada remains one of the last strongholds for lacustrine Lahontan cutthroat trout (Oncorhynchus clarkii henshawi; LCT), following historical declines throughout their native range. In Pyramid Lake, LCT have persisted despite anthropogenic alterations, and the population now depends entirely on stocking programs and efficient management. The purpose of this study was to identify important food-web interactions and potential limitations to the LCT population. The objectives were to 1) compare seasonal depth distributions, seasonal diet overlap, and trophic niche overlap between LCT and non-native Sacramento perch (Archoplites interruptus); and 2) to evaluate the seasonal depth distribution patterns of LCT and native tui chub (Gila bicolor), seasonal changes in LCT diet, and current LCT trophic position (TP). LCT remain apex predators, with both trophic position (large LCT TP = 4.30 ± 0.04 [mean±1.96∙SE]) and diet composition indicating high rates of piscivory (average annual rate of piscivory = 77.1% for large LCT; > 400 mm TL) throughout the year. Small LCT (200 – 400 mm TL) exhibited weak dietary overlap (Schoener’s Index = 0.55) and large LCT exhibited strong overlap (0.72) with Sacramento perch. Small and large LCT, and Sacramento perch, preyed most heavily on tui chub. Isotope data indicates strong overlap between large LCT and Sacramento perch niche space (large LCT 88.6%); however, catch rates indicate that Sacramento perch are only present in small numbers throughout the lake. LCT demonstrate high rates of piscivory, are not negatively influenced by the presence of Sacramento perch and do not appear to be exceeding carrying-capacity.
Hellgren, E. C., and J. A. Bissonette. 2003. Collared peccary. Chapter 41, Pages 867-876 in G. A. Feldhamer and B. Thompson, eds., Wild mammals of North America: biology, management, and economics. Second edition. The Johns Hopkins University Press, Baltimore, MD, USA.	April 2003
Hansen, M., P. Budy , C. Guy, and T. McMahon. 2019. Trout as Native and Invasive Species: a Management Paradox. Invited Chapter 819 in: Diversity and Status of Trouts and Chars of the World. Editors: J.L. Kershner, J. E. Williams, R. E. Gresswell. Transactions of the American Fisheries Society. Symposium Book. USGS FSP: IP-095921.	May 2019
Hansen, E., and P. Budy. 2011. The potential of passive stream restoration to improve ecosystem health and minimize the impact of fish disease: a short-term assessment. Journal of the North American Benthological Society 30:573-588.	June 2011
Hafen, K. and P. Budy. 2015 Agonistic behavior among three stocked trout species. North American Journal of Fisheries Management, Management Brief: 35:3, 551-556. USGS FSP: IP-058150. \| Abstract	January 2015	Among salmonids, agonistic behavior is a means to increase an individual’s fitness by obtaining resources, defending resources, and establishing dominance over other individuals. Such behavior may also allow one species to gain growth or competitive advantage over others at a community level. In Scofield Reservoir, Utah, Bear Lake cutthroat trout (Oncorhynchus clarkii utah) and tiger trout (Salmo trutta, female X Salvelinus fontinalis, male) were added to the rainbow trout (O. mykiss) stocking regimen as potential biological controls for Utah chub (Gila atraria), creating an unusual complex of predatory species. A study evaluating the feeding ecology of the three trout species in the reservoir indicated substantial niche overlap between tiger trout and cutthroat trout at top tropic positions, and overlap between rainbow trout and Utah chub at lower positions, raising concern that community interactions may result in an overall decrease of trout condition. To evaluate the potential for negative interactions among these three species, we designed laboratory experiments to assess agonistic behavior. We determined differences in agonistic behavior between rainbow trout, cutthroat trout, and tiger trout with replicated, pair-wise treatments of one fish of each species together in a tank at different densities. We then observed the number of chases and contacts occurring between species, and considered density and relative length differences in our analysis. In all treatments rainbow trout initiated significantly more aggressive interactions than tiger trout or cutthroat trout (p<0.001). Feeding did not have a significant effect on agonistic behavior for any species; however differences in density and relative fish size appear to influence the degree of aggressive behavior. Though agonistic behavior has benefits, its tradeoffs may decrease rainbow trout condition in natural environments.
Haddix, T., and P. Budy. 2005. Factors that limit growth and abundance of rainbow trout (Oncorhynchus mykiss) across ecologically distinct areas of Flaming Gorge Reservoir, Utah-Wyoming. North American Journal of Fisheries Management 25:1082-1094.	January 2005
Gunson, K. E., A. P. Clevenger, A. T. Ford, J. A. Bissonette, and A. Hardy. 2009. A comparison of data sets varying in spatial accuracy used to predict the occurrence of wildlife-vehicle collisions. Environmental Management 44(2):268-277.	July 2009
Guisan, A., T. C. Edwards, Jr., and T. Hastie. 2002. Generalized regression modeling in ecological research: setting the scene. Ecological Modelling 157:89-100.	January 2003
Guisan, A., T. C. Edwards, Jr., and T. Hastie, Guest Editors. 2002. Advances in GLM/GAM modelling: from species' distribution to environmental management. Ecological Modelling (Special Issue) 157:89-341.	January 2003
Grilo, C., M. Cruz, J. A. Bissonette, and M. Santos-Reis. Poster. 2006. The role of patch size and isolation to carnivore relative abundance. First European Congress of Conservation Biology, 22-26 August, 2006, Eger, Hungary. (August 2006)	August 2006
Grilo, C., J.A. Bissonette, and P. A. Cramer. 2010. Mitigation measures to reduce impacts on biodiversity. Pages 73-114 In S. R. Jones (ed.) Highways: Construction, Management, and Maintenance, Nova Science Publishers, Inc., Hauppauge, NY 11788. ISBN:978-1-61728-862-3 https://www.novapublishers.com/catalog/product_info.php?products_id=15946 \| Abstract \| Publisher Website	December 2010	This is a chapter that summarized the literature on road ecology for engineers.
Grilo, C., J. A. Bissonette, and M. Santos-Reis. 2008. Response of carnivores to existing highway culverts and underpasses: Implications for road planning and mitigation. Biological Conservation 17(7):1685-1699 (On-Line: DOI 10. 1007/s10531-008-9374-8. \| Publisher Website	January 2008
Grilo, C., F. Ascensão, M. Santos-Reis, and J. A. Bissonette. 2011. Do well connected landscapes promote road-related mortality. European Journal of Wildlife Research.57:707-716. (Online first DOI: 10.1007/s10344-010-0478-6)	March 2011
Grilo, C., C. Silva, C. Baltazar, L. Gomes, J. A. Bissonette & M. Santos-Reis. 2007. Patterns of carnivore road casualties in southern Portugal. . Page 556-561 IN Proceedings of the 2007 International Conference on Ecology and Transportation (ICOET), C. L. Irwin, D. Nelson, and K. P. McDermott. Raleigh NC. : Center for Transportation and the Environment, North Carolina State University, 2007. Little Rock, AR.	October 2007
Goeking, S. A, Izlar, D. K., and T. C. Edwards, Jr. A landscape-level assessment of whitebark pine regeneration in the Rocky Mountains, USA. In revision, Forest Science.	August 2018
Frescino, T. S., T. C. Edwards, Jr., and G. G. Moisen. 2001. Modelling spatially explicit forest structural variables using generalized additive models. Journal of Vegetation Science 12:15-26.	June 2001
Forman, R. T. T., D. Sperling, J. A. Bissonette, A. P. Clevenger, C. D. Cutshall, V. H. Dale, L. Fahrig, R. France, C. R. Goldman, K. Heanue, J. A. Jones, F. J. Swanson, T. Turrentine, & T. C. Winter. 2003. Road Ecology; Science and Solutions. Island Press, Covelo, CA.	January 2003
Edwards, T. C., Jr., G. G. Moisen, T. S. Frescino, and R. J. Schultz. 2005. The application of FIA-based data to wildlife habitat modelling: a comparative study. Pages 7-11 in Proceedings of the Fourth Annual Forest Inventory and Analysis Symposium, New Orleans, Louisiana, USA, R. E. McRoberts, G. A. Reams, P. C. Van Deusen, W. H. McWilliams, and C. J. Cieszewski, Editor. General Technical Report NC-252, North Central Research Station, USDAForest Service, St. Paul, Minnesota, USA.	December 2005
Edwards, T. C., Jr., G. G. Moisen, T. S. Frescino, and R. J. Schultz. 2005. The application of FIA-based data to wildlife habitat modelling: a comparative study. Pages 7-11 in Proceedings of the Fourth Annual Forest Inventory and Analysis Symposium, New Orleans, Louisiana, USA, R. E. McRoberts, G. A. Reams, P. C. Van Deusen, W. H. McWilliams, and C. J. Cieszewski, Editor. General Technical Report NC-252, North Central Research Station, USDAForest Service, St. Paul, Minnesota, USA.	October 2005
Edwards, T. C., Jr., G. G. Moisen, T. S. Frescino, and R. J. Schultz. 2004. The application of FIA-based data to wildlife habitat modelling: a comparative study. Proceedings of the 2002 FIA Science Symposium, New Orlean, Louisiana, USA.	August 2003
Edwards, T. C., Jr., G. G. Moisen, T. S. Frescino, and J. J. Lawler. 2004. Use of Forest Inventory and Analysis information in wildlife habitat modelling: a process for linking multiple scales. Pages 188-194 in McRoberts, R. E., G. A. Reams, P. C. Van Duesen, and J. W. Moser, Editors. Proceedings of the Third Annual Forest Inventory and Analysis Symposium, General Technical Report NC-230, North Central Research Station, USDA Forest Service, St. Paul, Minnesota, USA.	December 2004
Edwards, T. C., Jr., G. G. Moisen, T. S. Frescino, and J. J. Lawler. 2002. Use of Forest Inventory and Analysis information in wildlife habitat modelling: a process for linking multiple scales. Proceedings of the 2001 FIA Science Symposium, Traverse City, Michigan, USA.	September 2002
Edwards, T. C., Jr., G. G. Moisen, T. S. Frescino, and J. J. Lawler. 2002. Linking multiple ecological scales for wildlife conservation modelling: the key to a successful transition from landscape theory to practice. In press, Pages 153-172 in J. A. Bissonette and I. Storch, editors. Landscape ecology and resource management: making the linkages. Island Press, Covelo, Californai, USA.	September 2002
Edwards, T. C., Jr., D. R. Cutler, N. E. Zimmermann, L. Geiser, and G. G. Moisen. 2006. Effects of underlying sample survey designs on the utility of classification tree models in ecology. Ecological Modelling 199:132-141.	September 2007
Edwards, T. C., Jr., Cutler, R., N. E. Zimmermann, L. Geiser, and J. Alegria. 2005. Model-based stratifications for enhancing the detection of rare ecological events. Ecology 86:1081-1090 (Invited paper in special topics issue: The Statistics of Rare Species)	September 2004
Edwards, T. C., Jr., Cutler, R., L. Geiser, J. Alegria, and D. McKenzie. 2004. Assessing rarity and seral stage association of species with low detectability: lichens in western Oregon and Washington forests. Ecological Applications 14:414-424.	April 2004
Edwards, T. C., Jr. 2004. A monumental leap forward in species-occurrence modelling. Book review of: Scott, J. M., P. J. Heglund, M. L. Morrison, J. B. Haufler, M. G. Raphael, W. A. Wall, and F. B. Samson, editors. 2002. Predicting species occurrence: issues of accuracy and scale. Island Press, Covello, California, USA. Conservation Biology 18:855-857.	July 2004
Dornelas, M and P. Budy (#25) and 182 others. 2018. BioTIME: a database of biodiversity time series for the Anthropocene. Global Ecology and Biogeography. Global 2018; 00:1–26. https://doi.org/10.1111/geb.12729. USGS FSP: under USGS co-author Rybicki.	January 2018
Doden, E. P. Budy, T. Avgar, and J.K. Young. 2022. Movement Patterns of Resident and Translocated Beavers at Multiple Spatiotemporal Scales in Desert Rivers. Frontiers in Conservation Science: Animal Behavior in Novel Environments 3:777797. doi: 10.3389/978-2-88976-152-4. * USDA manuscript approval process - Young. \| Abstract	May 2022	Wildlife translocations alter animal movement behavior, so identifying common movement patterns post-translocation will help set expectations about animal behavior in subsequent efforts. American and Eurasian beavers (<i>Castor canadensis; C. fiber</i>) are frequently translocated for reintroductions, to mitigate human-wildlife conflict, and as an ecosystem restoration tool. However, little is known about movement behavior of translocated beavers post-release, especially in desert rivers with patchy and dynamic resources. We identified space-use patterns of beaver movement behavior after translocation. We translocated and monitored nuisance American beavers in desert river restoration sites on the Price and San Rafael Rivers, Utah, USA, and compared their space use to resident beavers after tracking both across two years. Resident adult beavers were detected at a mean maximum distance of 0.86 ± 0.21 river kilometers (km; ±1 SE), while resident subadult (11.00 ± 4.24 km), translocated adult (19.69 ± 3.76 km), and translocated subadult (21.09 ± 5.54 km) beavers were detected at substantially greater maximum distances. Based on coarse-scale movement models, translocated and resident subadult beavers moved substantially farther from release sites and faster than resident adult beavers up to six months post-release. In contrast, fine-scale movement models using 5-minute location intervals showed similar median distance traveled between resident adult and translocated beavers. Our findings suggest day-to-day activities, such as foraging and resting, were largely unaltered by translocation, but translocated beavers exhibited coarse-scale movement behavior most similar to dispersal by resident subadults. Coarse-scale movement rates decreased with time since release, suggesting that translocated beavers adjusted to the novel environment over time and eventually settled into a home range similar to resident adult beavers. Understanding translocated beaver movement behavior in response to a novel desert system can help future beaver-assisted restoration efforts to identify appropriate release sites and strategies.
Dibble, K.L., C.B. Yackulic, T.A. Kennedy, P. Budy. 2015. Flow management and fish density regulate salmonid recruitment and adult size in tailwaters across western North America. Ecological Applications. Accepted 9 March, 2015. Early Online. MS#14-2211R1.	April 2015
De la Hoz Franco, E. A., and P. Budy. Accepted. Effects of biotic and abiotic factors on the distribution of trout and salmon along a longitudinal stream gradient. Environmental Biology of Fishes 72:379-391.	July 2004
De la Hoz Franco, E. A., and P. Budy. 2004. Linking Environmental Heterogeneity to the Distribution and Prevalence of Myxobolus cerebralis: A Comparison Across Sites in a Northern, Utah Transactions of the American Fisheries Society 133:1165-1178.	April 2004
Cutler, R., T. C. Edwards, Jr., J. Alegria, and D. McKenzie. 2002. A sample design framework for Survey and Manage species under the Northwest Forest Plan. Proceedings of the Section on Statistics and Environment, 2001 Joint Statistical Meeting, American Statistical Association, Alexandria, Virginia, USA.	January 2003
Cutler, D. R., Edwards, T. C., Jr., Beard, K. H., Cutler, A., Hess, K. T., Gibson, J., and J. J. Lawler. Random Forests for classification in ecology. Ecology 88:2783-2792.	October 2007
Cramer, P. C., and J. A. Bissonette. 2007. Integrating Wildlife Crossings into Transportation Plans in Projects in North America. Pages 328-334 IN Proceedings of the 2007 International Conference on Ecology and Transportation (ICOET), C. L. Irwin, D. Nelson, and K. P. McDermott. Raleigh NC. : Center for Transportation and the Environment, North Carolina State University, 2007.	October 2007
Cramer, P. C., and J. A. Bissonette. 2006. Wildlife crossings in North America: The state of the science and practice. Pp. 442-447; in Proceedings of the International Conference on Ecology and Transportation, San Diego, California. Center for Transportation and the Environment, North Carolina State University, NC. http://www. icoet.net/ICOET_2005/proceedings/06IPCh9-442-460. pdf	October 2006
Corral, L., E. Stuber, T. Frink, A. Bishop, and J.J. Fontaine. Scale-dependent land cover relationships, not intraguild occupancy explains canid community habitat relationships. Landscape Ecology 37, 249–266 (2022). https://doi.org/10.1007/s10980-021-01350-3	October 2021
Conner, M.M., P. Budy, R. Wilkion, M. Mill, D. Speas, P. MacKinnon, and M. McKinstry. 2020. Estimating population abundance with a mixture of physical capture and passive PIT tag antenna detection data. Submitted to Canadian Journal of Fisheries and Aquatic Sciences 77:1163-1171. \| Abstract	March 2020	The inclusion of passive interrogation antennas (PIA) detection data has promise to increase precision of population abundance estimates (). However, encounter probabilities are often higher for PIAs than for physical capture. If the difference is not accounted for, may be biased. Using simulations, we estimated the magnitude of bias resulting from mixed capture and detection probabilities, and evaluated potential solutions for removing the bias for closed capture models. Mixing physical capture and PIA detections (<i>p<sub>det</sub></i>) resulted in negative biases in . However, using an individual covariate to model differences removed bias and improved precision. From a case study of fish making spawning migrations across a stream-wide PIA (<i>p<sub>det</sub></i> ≤ 0.9), the coefficient of variation (CV) of () declined 39-82% when PIA data were included, and there was a dramatic reduction in time to detect a significant change in For a second case study, with only modest <i>p<sub>det</sub></i> (≤0.2) at randomly placed, smaller PIAs, CV( declined 4-18%. Our method is applicable for estimating abundance for any situation where data are collected with methods having different capture/detection probabilities.
Clancy, N.G., J. Dunnigan, and P. Budy. 2022. Relationship of trout growth to frequent electrofishing and diet collection in a headwater stream. North American Journal of Fisheries Management, Management Brief 42:109–114. DOI: 10.1002/nafm.10728. USGS FSP IP-133486. \| Abstract	January 2022	Research on fishes sometimes requires that individual fish be captured and subjected to invasive procedures multiple times over a relatively short time span. Electrofishing is one of the most common techniques used to capture fish and is known to cause injury to fish under certain circumstances. We evaluated the relationship of Columbia River Redband Trout <i>Oncorhynchus mykiss gairdneri </i>growth rates to the number of times captured via electrofishing and gastrically-lavaged during the summer of 2018 in a mountainous, headwater stream. We captured fish between two and seven times over the course of 86 days using continuous (smooth) DC backpack electrofishing. We observed no relationship between Redband Trout growth rate and number of times captured or gastrically-lavaged. While these findings contrast with hatchery electrofishing experiments, they may represent the greater resiliency of wild fishes. However, it appears researchers can use electrofishing and gastric lavage in cold waters at least once-per-month, and potentially up to twice-per-month, without greatly affecting the growth of wild Redband Trout.
Clancy, N.G., J. Brahney, J. Dunnigan, and P. Budy. 2021. Effects of a diatom ecosystem engineer (Didymosphenia geminata) on stream food webs: implications for native fishes. Can. J. Fish. Aquat. Sci. 78: 154–164 (2021) dx.doi.org/10.1139/cjfas-2020-0121. USGS FSP: IP-118864. \| Abstract	January 2021	Stream habitat changes affecting primary consumers often indirectly impact secondary consumers such as fishes. Blooms of the benthic algae <i>Didymosphenia geminata</i> (Didymo) are known to affect stream macroinvertebrates, but the potential indirect trophic impacts on fish consumers are poorly understood. In streams of the Kootenai River basin, we quantified the diet, condition, and growth rate of trout, charr, and sculpin. In 2018, macroinvertebrate taxa composition was different between a stream with Didymo and a stream without, but trout diets, energy demand, and growth rates were similar. Trout abundance was higher in the stream with Didymo, but the amount of drifting invertebrates was higher in the stream without. In 2019, we surveyed 28 streams with a gradient of coverage. Didymo abundance was correlated only with the percent of aquatic invertebrates in trout diets and was not related to diets of charr or sculpin or condition of any species. Thus, we found no evidence for a trophic link between Didymo blooms and the condition or growth of trout, charr, or sculpin in mountainous headwater streams.
Chambers, S., M. L. Villarreal, O. Duane, S. M. Munson, E.F. Stuber, G. Tyreef, E. K. Waller, and M.C. Duniway. Conflict of Energies: Mapping Mule Deer’s Caloric Expenditure in Response to Oil and Gas Development. Landscape Ecology – In Press.	September 2022
C. Grilo, J. A. Bissonette & M. Santos-Reis 2009. Spatial-temporal patterns in Mediterranean carnivore road casualties: consequences for mitigation. Biological Conservation 142:301-313 (first online (2008)doi:10. 1016/j. biocon. 2008. 10. 026). \| Publisher Website	April 2009
Busch, G., R. J. Lilieholm, R. E. Toth, and T. C. Edwards, Jr. 2005. Alternative future growth scenarios for Utah's Wasatch Front: assessing the impacts of development on the loss of prime agricultural lands. Transactions on Ecology & the Environment 80:247-256.	September 2005
Budy, P., and H. Schaller. 2007. Evaluating tributary restoration potential for Pacific Salmon recovery. Ecological Applications 17:1068-4086.	June 2007
Budy, P., T. Walsworth, G.P. Thiede, P.D. Thompson, M.D. McKell, P.B. Holden, P.D., Chase, W.c. Saunders. 2021. Remarkably rapid recovery of native trout following removal of a dominant non-native trout sub-population: evidence of resilience and conservation potential. Conservation Biology: Conservation Practice and Policy 2021;3:e325. doi.org/10.1111/csp2.325. \| Abstract	January 2021	While the importance of reducing the impacts of non-native species is increasingly recognized in conservation, the feasibility of such actions is highly dependent upon the stage of invasion and the size of the ecosystem being restored. As such, invasive species management actions face three questions regarding the ultimate success of the action: (1) will the removal efforts be successful (i.e., will the invasive species remain absent), (2) will the native species respond positively to non-native species removal, and (3) how long after restoration activities can the native species be expected to reach a recovered state without further intervention. Here, we present the results of a multi-year, non-native brown trout (Salmo trutta) removal and native Bonneville cutthroat trout (Oncorhynchus clarkii utah) recovery in a small tributary in the Intermountain West, USA. We monitored trout populations for nine years prior to the onset of eradication efforts, which included two years of mechanical removal followed by two years of chemical treatment. Cutthroat trout populations were then seeded with low numbers of both eggs and juvenile trout. We monitored population demographics and estimated population growth rates and carrying capacities for both populations from long-term depletion estimate data, assuming logistic growth. Prior to eradication, brown trout populations fluctuated around their carrying capacity. Following brown trout eradication and initial seeding efforts, cutthroat trout populations have demonstrated exponential growth. Within five years, cutthroat trout have approached their estimated carrying capacity. Population projections suggest that cutthroat trout are between 70 and 80% of their carrying capacity and are likely to be at 90% of their carrying capacity within 10 years. Additionally, at least four age-classes are present including adults large enough to satisfy angling demand. These results demonstrate native trout species have substantial capacity to rapidly recover following the removal of invasive species in otherwise minimally altered habitats. While these locations are likely limited in extent individually, collectively they may serve as source populations for larger connected systems. In such cases, these source populations may provide additional conservation potential through biotic resistance.
Budy, P., T. Haddix, and R. Schneidervin. 2005. Zooplankton size selection relative to gill raker spacing in rainbow trout (Oncorhynchus mykiss). Transactions of the American Fisheries Society 134:1228-1235.	October 2004
Budy, P., T. Bowerman, R. Al-Chokhachy, M.M. Conner, and H. Schaller. 2017. Quantifying long-term population trends of threatened bull trout: challenges, lessons learned, and opportunities. Accepted with minor revisions 17 November, 2016. Canadian Journal of Fisheries and Aquatic Sciences. USGS IP-066765.	January 2017
Budy, P., S. Wood[Seidel], and B. Roper. 2012. A study of the spawning ecology and early life history of Bonneville cutthroat trout. North American Journal of Fisheries Management 32:436-449.	April 2012
Budy, P., P.D. Thompson, M.D. McKell, G.P. Thiede, T. Walsworth, and M.M. Conner. 2020. A multi-faceted reconstruction of the metapopulation structure and life history expressions of a remnant metapopulation of Bonneville Cutthroat Trout (Oncorhynchus clarkii utah): implications for maintaining intermittent connectivity. Transactions of the American Fisheries Society 49: 443-461. \| Abstract	April 2020	Fishes that evolutionarily demonstrated a fluvial life history expression and migrated to spawning and rearing habitat using lotic corridors are increasingly impacted by fragmentation. The overall goal of this study was to identify the contemporary importance of mainstem connectivity and tributaries to maintaining life history expression, population structure, and viability of a large metapopulation of Bonneville Cutthroat Trout (BCT; <i>Oncorhynchus clarkii utah</i>) persisting in the Weber River, a highly fragmented Utah river. We used a multifaceted approach including active sampling, mark-recapture, passive PIT-tag detection, otolith microchemistry, and genetics. We collected BCT in all tributaries and the mainstem, encountering age-0 fish in three tributaries, indicating successful reproduction. In tributaries, the size structure was bimodal and consisted of smaller fish deemed to be resident and larger fish deemed to be fluvial, whereas all sizes and ages (≥ age-1) were present in the mainstem. We identified up to eight age classes; tributaries were dominated by ages 2 and 8, and the mainstem was dominated by ages 2, 5, 6, and 7. Tributary BCT had lower growth rates than BCT in the mainstem. We observed a surprising degree of fluvial life history expression, and fish also demonstrated very complex movement patterns across their life span. Average apparent survival (33%) was within the range estimated in similar studies for BCT, and resight rate was best explained by angler management regulations. The fact that BCT in the Weber River and tributaries still reproduce successfully in most years and are still able to grow into large, fluvial fish, suggests connectivity must be occasionally available despite considerable fragmentation. Therefore, this metapopulation may need little further human intervention if barriers to fish passage could be removed and thus connectivity could be improved and represents a high priority metapopulation for conservation, thus also highlighting the utility of our approach.
Budy, P., M.E. Baker, and S.K. Dahle. 2011. Predicting Fish Growth Potential and Identifying Potential Water Quality Issues: A Spatially Explicit Bioenergetics Approach. Environmental Management 48(4) 691-709. ISSN 0364-152X; DOI 10.1007/s00267-011-9717-1.	October 2011
Budy, P., M. M. Conner, N.L. Salant, and W. Macfarlane. 2015. An Occupancy-based Assessment of Regional Vulnerability. Conservation Biology. DOI: 10.1111/cobi.12513 USGS FSP: IP-049189.	January 2015
Budy, P., K.B. Rogers, Y. Kanno, B. Penaluna, N.H. Hitt. J. Dunham, C. Mellison, and W.L. Somer. 2019 Distribution and Status of Trouts and Chars in North America. Invited Chapter 8 in: Diversity and Status of Trouts and Chars of the World. Editors: J.L. Kershner, J. E. Williams, R. E. Gresswell. American Fisheries Society. Symposium Book. USGS FSP: IP-088494. \| Abstract	May 2019	Trout and char are a celebrated group of fishes and char hold a distinct place in the culture, nutrition, and economy of indigenous people. Their connections to ecosystems and people are profound and complex, and, in the United States, many are the state fish! Trout and char are speciose, and most taxa have evolved in response to major geological events. Today, relative to their historical distribution and abundance, the status of most trout and char in the United States is considered poor, and distributions have been dramatically reduced. In Canada, some of these fishes are depressed, while others are secure and support commercial and subsistence harvest. In the USA, for example, of the lineages of Oncorhynchus that we described, two are already extinct, five are listed as Threatened under the ESA, three are protected under Conservation Agreements or are considered ‘Species of Concern’, and those that remain have all undergone or are currently undergoing status assessments due to declines in abundance and distribution (Table 1). In contrast, of the four Salvelinus species we reviewed, only one is listed as Threatened under ESA, one is declining across its native range, and the other two have no range-wide legal conservation status and are considered stable. Arctic Char are even considered a sustainable food fish and are “of least concern” on the IUCN list.<br>Most species or sub-species face similar threats, although the most important limiting factors varied. Habitat degradation, genetic introgression, and the negative effects of non-native fishes (often by other trout) are the most influential threats to persistence. However, because all trout are obligate cold-water species, climate warming is also a ubiquitous threat. In addition, due to their extreme popularity as a game fish and recreational and economic value, trout and char enjoy broader management support than most species of fish and wildlife, particularly among those that are imperiled. As a consequence, there is a long history of trout and char management in North America. That history has changed over time from management focused on improving recreational angling opportunities to management that also emphasizes conservation and restoration of native populations. Common management strategies include hatchery propagation, harvest restrictions, habitat restoration (riparian, in-stream), improving passage and connectivity, and minimizing the impacts of non-natives (via removal, sterilization). Despite their imperiled status and persistent threats, the outlook is promising for many species, sub-species, and populations, largely because the most important limiting factors have been identified and because they are, in sum, a wildly celebrated group of fishes.
Budy, P., G.P. Thiede, and P. McHugh. 2007. Quantification of the vital rates, abundance, and status of a critical, endemic population of Bonneville cutthroat trout. North American Journal of Fisheries Management 27:593-604.	April 2007
Budy, P., G.P. Thiede, N. Bouwes, C.E. Petrosky, and H. Schaller. 2002. Evidence linking delayed mortality of Snake River salmon to their earlier hydrosystem experience. North American Journal of Fisheries Management 22:35-51.	January 2002
Budy, P., G.P. Thiede, J. Lobon-Cervia, G. Gonzales, P. A McHugh, A. McIntosh, L.A. Vollestad, E. Becares and P. Jellyman. 2013. Limitation and facilitation of one of the world's most invasive fish: an intercontinental comparison. Ecology 94:356-367. \| Abstract	February 2013	Purposeful species introductions offer opportunities to inform our understanding of both invasion success and conservation hurdles. We evaluated factors determining the energetic limitations of brown trout (Salmo trutta) in both their native and introduced ranges. Our focus was on brown trout because they are nearly globally distributed, considered one of the world’s worst invaders, yet imperiled in much of their native habitat. We synthesized and compared data describing temperature regime, diet, growth, and maximum body size across multiple spatial and temporal scales, from country (both exotic and native habitats) and major geographic area (MGA) to rivers and years within MGA. Using these data as inputs, we next used bioenergetic efficiency (BioEff ), a relative scalar representing a realized percentage of maximum possible consumption (0–100%) as our primary response variable and a multi-scale, nested, mixed statistical model (GLIMMIX) to evaluate variation among and within spatial scales and as a function of density and elevation. MGA and year (the residual) explained the greatest proportion of variance in BioEff. Temperature varied widely among MGA and was a strong driver of variation in BioEff. We observed surprisingly little variation in the diet of brown trout, except the overwhelming influence of the switch to piscivory observed only in exotic MGA. We observed only a weak signal of density-dependent effects on BioEff; however, BioEff remained ,50% at densities .2.5 fish/m2. The trajectory of BioEff across the life span of the fish elucidated the substantial variation in performance among MGAs; the maximum body size attained by brown trout was consistently below 400 mm in native habitat but reached ;600 mm outside their native range, where brown trout grew rapidly, feeding in part on naive prey fishes. The integrative, physiological approach, in combination with the intercontinental and comparative nature of our study, allowed us to overcome challenges associated with context-dependent variation in determining invasion success. Overall our results indicate ‘‘growth plasticity across the life span’’ was important for facilitating invasion, and should be added to lists of factors characterizing successful invaders.
Budy, P., G.P. Thiede, C. Luecke, and R.W. Schneidervin. 2009. Warmwater and coldwater fish in two-story standing waters. Pages 159 – 169 in S. Bonar, W.A Hubert, and D.W. Willis, editors. Standard methods for sampling North American freshwater fishes. American Fisheries Society, Bethesda, Maryland.	January 2009
Budy, P., G.P. Thiede, A. Dean. D. Olsen, and G. Rowley. 2012. A comparative and experimental evaluation of the performance of diploid and triploid brooks trout. North American Journal of Fisheries Management 21:1211-1224. \| Abstract	August 2012	Despite numerous negative impacts, nonnative trout are still being stocked to provide economically and socially valuable sport fisheries in western mountain lakes. We evaluated relative performance and potential differences in feeding strategy and competitive ability of triploid versus diploid brook trout Salvelinus fontinalis in alpine lakes, as well as behavioral and performance differences of diploid and triploid brook trout in two controlled experimental settings: behavioral experiments in the laboratory and performance evaluations in ponds. Across lakes, catch per unit effort (CPUE) and relative weight (Wr) were not significantly different between ploidy levels. Mean sizes were also similar between ploidy levels except in two of the larger lakes where diploids attained slightly larger sizes (approximately 20 mm longer). We observed no significant differences between diploids and triploids in diet, diet preference, or trophic structure. Similarly, growth and condition did not differ between ploidy levels in smallerscale pond experiments, and aggressive behavior did not differ between ploidy levels (fed or unfed fish trials) in the laboratory. Independent of ploidy level, the relative performance of brook trout varied widely among lakes, a pattern that appeared to be a function of lake size or a factor that covaries with lake size such as temperature regime or carrying capacity. In summary, we observed no significant differences in the relative performance of brook trout from either ploidy level across a number of indices, systems, and environmental conditions, nor any indication that one group is more aggressive or a superior competitor than the other. Collectively, these results suggest that triploid brook trout will offer a more risk-averse and promising management opportunity when they are stocked to these lakes and elsewhere to simultaneously meet the needs for the sport fishery and conservation objectives.
Budy, P., G. P. Thiede, P. McHugh, E. S. Hansen, and J. Wood. 2008. Exploring the relative influence of biotic interactions and environmental conditions on the abundance and distribution of exotic brown trout (Salmo trutta) in a high mountain stream. Ecology of Freshwater Fish 17:554-556.	June 2008
Budy, P. and J. Gaeta. 2018. Brown trout as an invader: A Synthesis of Problems and Perspectives in Western North America. Invited Chapter 12.1 in: The Brown Trout Salmo trutta L.: A primer on a paradigmatic species. Editors: Javier Lobón-Cerviá & Nuria Sanz Ball.llosera. Wiley. USGS FSP: IP-058204 \| Abstract	February 2018	Brown trout are one of the most pervasive and successful invaders worldwide and are ubiquitous across the Intermountain West, USA (IMW). This species is the foundation of extremely popular and economically significant sport fisheries despite well-established negative effects on native fishes and ecosystems, resulting in very challenging, and often opposing, conservation and management goals. Herein, we review the direct (e.g., competition and predation) and indirect (e.g., disease vectors) pathways through which brown trout across the IMW have posed a threat to native species. We discuss the importance of brown trout as economically and culturally important fisheries, especially in novel tailwater ecosystems created by damming. To this end, we surveyed 26 experts from 8 states across the IMW to document the relevance of novel brown trout fisheries in 58 tailwaters and found brown trout are thriving in these novel ecosystems, which are often unsuitable for native fishes. We discuss the challenging interplay between protecting native species and managing novel brown trout fisheries. Notably, the future of exotic brown trout in the IMW is shifting as the prestige of native fisheries is growing and many non-native eradication efforts have occurred. The future of exotic brown trout in the IMW, will depend on the nexus of public sentiment and policy, the effectiveness of eradication efforts, and the effect of climate change on both the native fishes and exotic brown trout.
Budy, P. and C. Luecke. 2014. Understanding how lake populations of Arctic char are structured and function with special consideration of the potential effects of climate change: a multi-faceted approach. Oecologia DOI 10.1007/s00442-014-2993-8. USGS FSP: SPDS: IP-053259. \| Abstract	June 2014	Size dimorphism in fish populations, both causes and consequences, has been an area of considerable focus; however, uncertainty remains whether size dimorphism is dynamic or stabilizing and about the role of exogenous factors. Here, we explored patterns among empirical vital rates, population structure, abundance and trend, and predicted the effects of climate change on populations of arctic char (Salvelinus alpinus) in two lakes. Despite differences in underlying geology, population and lake size, the density of adult char was extremely similar between lakes (0.002-0.003 m-2), and both populations cycle between dominance by small (≤ 300 mm) and large (> 300 mm) char. Survival and growth rates were relatively high (40-96 %; approximately 0.1 g.day-1) and comparable to lower latitude relatives. Climate change scenarios resulted in temperatures closer to optimal and for a longer growing season. An increase in consumption rates (28-34 %) under climate change scenarios led to much greater growth rates (23-34 %). Higher growth rates predicted under climate change resulted in an even greater predicted amplitude of cycles in population structure as well as an increase in Ro (reproductive output) and decrease in Go (generation time). Collectively, these results indicate that arctic char populations are extremely sensitive to small changes in the number of ice-free days. We hypothesize that, years with a longer growing season, predicted to occur more often under climate change, produce elevated growth rates of small char and act in a manner similar to a “resource pulse”, allowing a sub-set of small char to “break though”, thus setting the cycle in population structure.
Brungard, C.W., J.L. Boettinger, M.C. Duniway, S.A. Wills, and T.C. Edwards, Jr. 2015. Machine learning for predicting soil classes in three semi-arid landscapes. Geoderma 239:68-83. DOI: 10.1016/j.geoderma.2014.09.019	April 2016
Bowerman, T., Neilson, B. and P. Budy. 2014. Effects of fine sediment, hyporheic flow, and spawning site selection on survival and development of bull trout embryos. Canadian Journal of Fisheries and Aquatic Sciences 71: 1–13. doi.org/10.1139. USGS FSP: IP-049185. \| Abstract	March 2014	Successful spawning is imperative for the persistence of salmonid populations, but relatively little research has been conducted to evaluate factors affecting early life-stage survival for bull trout (Salvelinus conﬂuentus), a threatened char. We conducted a ﬁeld experiment to assess the relationship between site-speciﬁc environmental factors and bull trout embryo survival and fry emergence timing. Survival from egg to hatch was negatively related to percent ﬁne sediment (<1 mm) in the redd and positively related to the strength of downwelling at spawning sites. Survival of eggs to fry emergence was also negatively related to ﬁne sediment, and the best statistical models included additional variables that described the rate of downwelling and intragravel ﬂow within the incubation environment. Fry emerged at an earlier stage in development from redds with high percentages of ﬁne sediment. Increased hydraulic conductivity via redd construction and selection of spawning sites with strong downwelling appear to enhance hyporheic ﬂow rates and bull trout egg survival, but early life-stage success may ultimately be limited by intrusion of ﬁne sediment into the incubation environment.
Bowerman, T. and P. Budy. 2012. Incorporating movement patterns to improve survival estimates for juvenile bull trout North American Journal of Fisheries Management 32(6):1123-1136. \| Abstract	November 2012	Populations of many fish species are sensitive to changes in vital rates during early life stages, but our understanding of the factors affecting growth, survival, and movement patterns is often extremely limited for juvenile fish. These critical information gaps are particularly evident for bull trout Salvelinus confluentus, a threatened Pacific Northwest char. We combined several active and passive mark–recapture and resight techniques to assess migration rates and estimate survival for juvenile bull trout (70–170 mm total length).We evaluated the relative performance of multiple survival estimation techniques by comparing results from a common Cormack–Jolly–Seber (CJS) model, the less widely used Barker model, and a simple return rate (an index of survival). Juvenile bull trout of all sizes emigrated from their natal habitat throughout the year, and thereafter migrated up to 50 km downstream.With the CJS model, high emigration rates led to an extreme underestimate of apparent survival, a combined estimate of site fidelity and survival. In contrast, the Barker model, which allows survival and emigration to be modeled as separate parameters, produced estimates of survival that were much less biased than the return rate. Estimates of age-class-specific annual survival from the Barkermodel based on all available data were 0.218±0.028 (estimate±SE) for age-1 bull trout and 0.231±0.065 for age-2 bull trout. This research demonstrates the importance of incorporating movement patterns into survival analyses, and we provide one of the first field-based estimates of juvenile bull trout annual survival in relatively pristine rearing conditions. These estimates can provide a baseline for comparison with future studies in more impacted systems and will help managers develop reliable stage-structured population models to evaluate future recovery strategies.
Bottcher, J.L., T.E. Walsworth, G.P. Thiede, P. Budy, and D. Speas. 2013. Frequent Usage of Tributaries by the Endangered Fishes of the Upper Colorado River Basin: Observations from the San Rafael River, Utah. North American Journal of Fisheries Management, Management Brief. Online DOI: 10.1080/02755947.2013.785993. \| Abstract	May 2013	The importance of main-stem rivers and major tributaries to endangered Colorado River fishes is well documented, but the use and significance of small tributary streams remains poorly understood. Historically, these fishes probably used smaller tributaries for spawning, rearing, feeding, and refuge. Currently, the proliferation of nonnative species and altered flows may have affected tributary use by endangered fishes. In February 2008 and 2009, we installed a PIT-tag passive interrogation array (PIA) in the San Rafael River, Utah, approximately 2 km upstream from the confluence with the Green River, and another PIA approximately 60 km upstream from the Green River confluence. Using passive detections and active captures in the San Rafael River from 2008 to 2010, we detected 15 Colorado Pikeminnow Ptychocheilus lucius, 16 Bonytails Gila elegans, 20 Razorback Suckers Xyrauchen texanus, and five “undocumented” fish. Several endangered fishes were detected on multiple occasions and across years, oftenmoving into and out of the San Rafael River from distances up to 360 km away (range, 6–360 km). Our findings demonstrate the use and the potential importance of small tributaries and their fragile habitats to endangered fishes.
Bolliger, J., T. C. Edwards, Jr., S. Eggenberg, S. Ismail, I. Seidl, and F. Kienast. 2011. Dry grassland meadows of high conservation priority: balancing forest regeneration probabilities and maintenance costs. Conservation Biology 25:567-576.	October 2011
Bjurlin, C., and J. A. Bissonette. 2004. Survival during early life stages of the Desert Tortoise (Gopherus agassizii) in the South-Central Mojave Desert. Journal of Herpetology 38(4):527-535.	May 2004
Bissonette, J., and I. Storch. 2003. Understanding Fragmentation: Getting Closer to 42. Conservation Ecology 7(2): r5. [online] URL: http://www. consecol. org/vol7/iss2/resp5	September 2003
Bissonette, J., C. Kassar, and L. J. Cook. 2008. Assessment of costs associated with deer-vehicle collisions: Human death and injury, vehicle damage, and deer loss. Human Wildlife Conflicts 2(1):17-27.	January 2008
Bissonette, J. A., and W. A. Adair. 2008 Restoring habitat permeability to roaded landscapes with isometrically-scaled wildlife crossings. Biological Conservation141(2):482-488. digital object identifier: http://dx. doi. org/10. 1016/j. biocon. 2007. 10. 019 \| Publisher Website	February 2008
Bissonette, J. A., and S. Rosa, 2009. Road zone effects in small mammal communities. Ecology and Society 14(1):27 \| Publisher Website	April 2009
Bissonette, J. A., and P. C. Cramer. 2007. Abstract: North American Decision Guidelines for mitigating roads for wildlife. Page 422 IN Proceedings of the 2007 International Conference on Ecology and Transportation (ICOET), C. L. Irwin, D. Nelson, and K. P. McDermott. Raleigh NC. : Center for Transportation and the Environment, North Carolina State University, 2007. Little Rock, AR. 21 May 2007.	October 2007
Bissonette, J. A., and I. Storch. 2002. Fragmentation: is the message clear?Conservation Ecology 6(2): 14. [online] URL: http://www. consecol. org/vol6/iss2/art14	November 2002
Bissonette, J. A., and I. Storch, eds. 2007 Temporal dimensions of landscape ecology: Wildlife responses to variable resources. Springer-Verlag, New York and Heidelberg. (	January 2007
Bissonette, J. A., and I. Storch (eds). 2003. Landscape theory and resource management: Linking theory with practice. Island Press, Covelo, CA 463pp.	January 2003
Bissonette, J. A., and C. Kassar. 2008 Location of deer-vehicle collisions are unrelated to traffic volume or posted speed limits. Human Wildlife Conflicts 2(1):122-130.	January 2008
Bissonette, J. A., C. S. Loftin, D. M. Leslie, Jr., L. A. Nordstrom, and W. J. Fleming. 2000. The cooperative research unit program and wildlife education: historic development, future challenges. Wildlife Society Bulletin 28:534-541.	November 2000
Bissonette, J. A. 2008. Book Review of Habitat Fragmentation and Landscape Change: An Ecological and Conservation Synthesis by D. B. Lindenmayer and J. Fischer, 2006. Ecological Restoration 26(2):162-164	June 2008
Bissonette, J. A. 2007. Resource acquisition and animal response in dynamic landscapes: Keeping the books. Pages 12-29 in: J. A. Bissonette, and I. Storch, eds. 2007. Temporal dimensions of landscape ecology: Wildlife responses to variable resources. Springer-Verlag, New York and Heidelberg. (In Press, chapter in edited book submitted to publisher July 2006)	January 2007
Bissonette, J. A. 2005. Thinking differently at larger ecological scales: developing the strategy. Proc. 12th Ann. Meeting Australasian Wildl. Manage. Soc., Darwin, Australia.	September 2005
Bissonette, J. A. 2003. Linking landscape patterns to biological reality. Pages 15-34 in J. A. Bissonette and I. Storch (eds) ) Landscape Theory and resource management: Linking theory with practice. Island Press, Covelo, California.	September 2003
Bissonette, J. A. 2002. Scaling roads and wildlife: the Cinderella principle. Zeitschrift fuer Jagdwissenschaft 48(2002):208-214 (supplement).	March 2003
Bissonette, J. A. 2002. Linking theory, data, and practice in conservation: implications for fragmentation studies. Revista De Biologia 20(1-4): 7-16.	September 2002
Bissonette, J. A. 2001. American marten habitat choice: scaled multiple hypotheses provide some answers. Proc. Third Biennial Conf. on the Greater Yellowstone Ecosystem, 24-27 Sept. 1995: 53-56.	January 2001
Bissonette, J. A. 1997. Wildlife and Landscape Ecology: Effects of Pattern and Scale. Springer-Verlag, New York. 410pp.	August 1997
Bennet, S., B. Roper, R. Al-Chokhachy, and P. Budy. 2014. Annual Variation of Spawning Cutthroat Trout in a Small Western USA Stream: A Case Study with Implications for the Conservation of Potamodromous Trout Life History Diversity. North American Journal of Fisheries Management 34:1033-1046. USGS FSP:IP-050825. \| Abstract	January 2014	Little is known about the variability in the spatial and temporal distribution of spawning potamodromous trout despite decades of research directed at salmonid spawning ecology and the increased awareness that conserving life history diversity should be a focus of management. We monitored a population of fluvial–resident Bonneville Cutthroat Trout Oncorhynchus clarkii utah in a tributary to the Logan River, Utah, from 2006 to 2012 to gain insight into the distribution and timing of spawning and what factors may influence these spawning activities. We monitored Bonneville Cutthroat Trout using redd surveys with multiple observers and georeferenced redd locations. We documented an extended spawning period that lasted from late April to mid-July. The onset, median, and end of spawning was best predicted by the mean maximum water temperature during the first 13 weeks of the year (F = 130. 4, df = 5, R2 = 0.96, P < 0.0001) with spawning beginning and ending earlier in years that had warmer water temperatures prior to spawning. The distribution of redds was clumped each year and the relative density of redds was greater in a reach dominated by dams constructed by beavers Castor canadensis. Both dam failure and construction appeared to be responsible for creating new spawning habitat that was quickly occupied, demonstrating rapid temporal response to local habitat changes. Bonneville Cutthroat Trout appeared to establish and defend a redd for up to 2 d, and spawning most often occurred between similar-sized individuals. Spawning surveys for potamodromous trout are an underutilized tool that could be used to better understand the distribution and timing of spawning as well as determine the size and trends of the reproducing portion of populations of management concern. Without efforts to document the diversity of this important aspect of potamodromous trout life history, prioritization of conservation will be problematic.
Bassett, S. D., and T. C. Edwards, Jr. 2003. Effect of different sampling schemes on the spatial placement of conservation reserves in Utah, USA. Biological Conservation 113:141-151.	August 2003
Albert, C. H., N. G. Yoccoz, T. C. Edwards, Jr., C. H. Graham, N. E. Zimmermann, and W. Thuiller. 2010. Sampling in ecology and evolution – bridging the gap between theory and practice. Ecography 33:1028-1037.	December 2010
Al-Chokhachy, R., and P. Budy. 2007. Summer microhabitat use of fluvial bull trout in Eastern Oregon streams. North American Journal of Fisheries Management 27:1068-1081.	August 2007
Al-Chokhachy, R., P. Budy, and M. Conner. 2009. Detecting declines in the abundance of a bull trout (Salvelinus confluentus) population: understanding the accuracy, precision, and costs of our efforts. Canadian Journal of Fisheries and Aquatic Sciences 66: 649–658.	April 2009
Al-Chokhachy, R., Budy, P., and H. Schaller. 2005. A comparison of redd counts and mark/resight methods for estimating abundance and monitoring bull trout population trends. North American Journal of Fisheries Management 25:1505-1512.	April 2005
Al-Chokhachy, R., B.B. Roper, T. Bowerman, and P. Budy. 2010. A review of bull trout habitat associations and exploratory analyses of patterns across the Interior Columbia River Basin. North American Journal of Fisheries Management 30:464-480.	March 2010
Al-Chokhachy, R. and P. Budy. 2008. Demographic characteristics, population structure, and vital rates of a fluvial population of bull trout in Oregon. Transactions of the American Fisheries Society 137:262-277.	December 2008
PennockC.A., G.P. Thiede, P. Budy. 2023 Density-dependent processes and population dynamics and feeding ecology of native sculpin in a mountain river. Ecology of Freshwater Fish. DOI: 10.1111/eff.12710. USGS FSP IP-147035. \| Abstract	February 2023	Understanding the processes governing population regulation is important for effective conservation and management. Disentangling the relative role of density-dependent versus density-independent population regulation is often made difficult by the inability to control for abiotic or biotic factors, but long-term datasets are invaluable in this pursuit. We used a 14-year dataset from the Logan River, Utah to assess long-term trends in abundance and evidence of density-dependent and density-independent population regulation of Paiute sculpin (<i>Cottus beldingii</i>) across six sites. Additionally, we evaluated the feeding ecology of sculpin over four years. Sculpin densities generally increased from downstream to upstream, and the per capita rate of increase was negatively and significantly correlated with sculpin density at four of six sites. We also observed a negative relationship between per capita consumption and sculpin density, providing a potential mechanism for density-dependent population regulation. Sculpin displayed a generalist feeding strategy, and interannual differences in diet composition appeared to be influenced by interannual differences in flow, particularly years with higher magnitude flow. The observed spatial patterns in sculpin abundance throughout the watershed matched those of invasive brown trout (<i>Salmo trutta</i>), which are the top piscivore in the Logan River. Our results suggest sculpin populations are regulated largely by density-dependent processes and match those from other studies on sculpin population dynamics including a range of species and habitats that differ vastly in abiotic conditions.
Budy, P., G.P. Thiede and N. Heredia and E. Horgen. 2021. Exploring the contemporary relationship between predator and prey in a culturally-important Lahontan Cutthroat Trout population in Pyramid Lake, Nevada. Transactions of the American Fisheries Society 150:291–306. DOI: 10.1002/tafs.10291. USGS FSP IP-119395. \| Abstract	January 2021	Lahontan Cutthroat Trout (LCT) <i>Oncorhynchus clarkii henshawi</i> have experienced some of the most marked reductions in abundance and distribution of Cutthroat Trout. In Pyramid Lake, Nevada, USA the population of LCT has returned from the brink of extirpation, and although highly managed via stocking, is thriving, and has recently started to reproduce naturally. Our objectives were to determine: 1) if predator and prey remain tightly coupled, 2) whether LCT are food limited, and 3) the status of the LCT population with regard to the potential prey-based contemporary carrying capacity. We used a multi-faceted approach including intensive field fish sampling, bioenergetic modeling, cohort reconstruction, and comparisons of prey availability to consumption. We estimated the average population of LCT in Pyramid Lake is 1.2 million, average annual stocking is 650,000, and fish angled ranges from 5,000 – 14,000/yr (90% release rate). Driven by seasonal and size variation in consumption, individual annual consumption of LCT varied from 667 - 992 g/yr for small LCT (200 – 400 mm) and 2,388 - 3,057 g/yr for large LCT (> 400 mm). LCT are consuming on average, 14 – 63% of the standing crop of Tui Chub <i>Gila bicolor</i> annually, indicating that LCT are currently not exceeding their prey-based carrying capacity. LCT in Pyramid Lake remain tightly coupled to their primary native prey, Tui Chub, despite considerable changes to the ecosystem. This means managing for a robust population of LCT translates largely to managing for forage fish. This supply versus demand issue is a particular concern in Pyramid Lake given there is indication the density of Tui Chub is declining concordant with declining lake elevation. Given the conservation importance of this population of LCT, careful monitoring is critical; however “predation inertia” indicates effective short-term management in response to fluctuations in forage fishes is likely possible.
Budy, P. , C. Pennock, A. Giblin, C. Luecke, D. White, and G. Kling. 2021. Understanding the effects of climate change via disturbance on pristine arctic lakes; multi-trophic level response and recovery to a twelve-year, low-level fertilization experiment. To be submitted to Limnology and Oceanography, Special Issue on “Nonlinear dynamics, resilience, and regime shifts in aquatic communities and ecosystems.” 2021: 1-18. doi: 10.1002/lno.11893. USGS FSP IP-129828. \| Abstract	August 2021	Effects of climate change-driven disturbance on lake ecosystems can be subtle; indirect effects include increased nutrient loading that could impact ecosystem function. We designed a low-level fertilization experiment to mimic persistent, climate change-driven disturbances (deeper thaw, greater weathering, or thermokarst failure) delivering nutrients to arctic lakes. We measured responses of pelagic trophic levels over 12 years in a fertilized deep lake with fish and a shallow fishless lake, compared to paired reference lakes, and monitored recovery for six years. Relative to pre-fertilization in the deep lake, we observed a maximum pelagic response in chl <i>a</i> (+201%), dissolved oxygen (DO, -43%), and zooplankton biomass (+88%) during the fertilization period (2001-2012). Other responses to fertilization, such as water transparency and fish relative abundance, were delayed, but both ultimately declined. Phyto- and zoo-plankton biomass and community composition shifted with fertilization. The effects of fertilization were less pronounced in the paired shallow lakes, because of a natural thermokarst failure likely impacting the reference lake. In the deep lake there was (a) moderate resistance to change in ecosystem functions at all trophic levels, (b) eventual responses were often non-linear, and (c) post-fertilization recovery (return) times were most rapid at the base of the food web (2-4 years) while higher trophic levels failed to recover after 6 years. The timing and magnitude of responses to fertilization in these arctic lakes were similar to responses in other lakes, suggesting indirect effects of climate change that modify nutrient inputs may affect many lakes in the future.
Budy, P. G.P. Thiede, K. Chapman, and F. Howe. 2022. Potential conflicts among protected native birds and valuable sport fishes: pelican predation effects in a novel environment. Canadian Journal of Fisheries and Aquatic Sciences 79: 1–16. dx.doi.org/10.1139/cjfas-2021-0228. USGS FSP IP-125267. \| Abstract	February 2022	Reservoirs are one example of novel ecosystems which have developed into popular sport fisheries; these systems are also becoming seasonal refuges for migratory birds including piscivorous species such as the American white pelican (<i>Pelecanus erythrorhynchos</i>). We determined (1) the proportion of Bonneville cutthroat trout (<i>Oncorhynchus clarkii utah</i>) and other species consumed by pelicans, (2) whether pelicans have an adverse effect on cutthroat trout spawning movement, and 3) the relative importance of pelican predation toother sources of fish mortality on Strawberry Reservoir, Utah, USA. Greater than 85% of the pelican diet samples consisted of Utah sucker (<i>Catostomus ardens</i>), 6% were Utah chub (<i>Gila atraria</i>) and 3% contained cutthroat trout. We estimated pelicans consumed £ 2,600 individual cutthroat trout (~ 1% of population) in contrast to over 42,000 sucker, 19,000 chub, and > 6,000 crayfish. Bird-related mortality rate ranged 1 – 6% for PIT-tagged adult cutthroat trout and 4 – 16% for stocked subadult cutthroat trout. Pelicans primarily consume abundant non-game fish, thus any management action taken to control pelican predation would need to be carefully weighed against the benefits of non-game fish removal and the protected status of pelicans.
McLaren, J. S., P. E. Budy**, S. Brothers, R. W. Van Kirk. 2023. The scale-dependent role of submerged macrophytes on trout habitat. Canadian Journal of Fisheries and Aquatic Sciences 80:1533–1546. doi.org/10.1139/cjfas-2022-0182. USGS FSP IP-139190. \| Abstract	July 2023	Submerged macrophyte communities are prevalent in low-gradient rivers around the world and interact with rivers and their biota in complex ways; the net effect of these interactions on trout habitat provision remains poorly understood. We used snorkel surveys and bioenergetics to study trout habitat selection and potential mechanisms driving habitat selection in the submerged macrophyte-rich Henrys Fork, ID, USA. At smaller spatial scales (i.e., individual microhabitats), we hypothesized trout would select for locations with more submerged macrophytes that provide overhead cover from predators, drifting macroinvertebrates as food, and lower swimming costs. In contrast, we found individual trout selected for microhabitats without submerged macrophytes (, with deeper water ( and with greater bioenergetic potential (. At larger spatial scales (i.e., reach-scale), submerged macrophytes acted as a living substrate, indirectly creating a riverscape of complimentary microhabitats by increasing depth (), bioenergetic potential (), and by influencing reach-scale ecosystem dynamics which modulated trout habitat selection. Our study improves understanding of the complex relationship between submerged macrophytes and trout habitat, explaining conflicting results among previous studies and revealing potential management actions to improve trout productivity. Continued study of abiotic and biotic processes across multiple scales may continue to reveal unexpected scale-dependent effects and mechanisms controlling trout habitat quality, quantity, and preferences.

Presentations

Presentations	Presentation Date
de la Hoz, E.A., and P. Budy. 2002. Distribution of Myxobolus cerebralis in the Logan River, UT: effects on salmonid populations. American Fisheries Society, Baltimore, Wash,DC. (August 2002).	August 2002
de la Hoz, E.A., and P. Budy. 2002. Assessing the effects of disease and other environmental factors on the dyanamics, abundance, and distribution of endemic trout populations in the Logan River, Utah.	July 2002
de la Hoz, E. A., and P. Budy. 2002. Distribution of Myxobolus cerebralis in the Logan River: effects on salmonid populations. 8th annual Whirling Disease Symposium. Denver, Colorado.	February 2002
de la Hoz, E. A., and P. Budy. 2002. Distribution of Myxobolus cerebralis in the Logan River, UT: effects on salmonid populations. 8th Annual Whirling Disease Symposium. Denver, CO, February 2002. Poster.	February 2002
de la Hoz, E. A., G. P. Thiede, and P. Budy. 2003. Linking environmental factors to the distribution and prevalence of Myxobolus cerebralis among trout in the Logan River, UT. Bonneville Chapter of the American Fisheries Society, Grand Junction, CO.	March 2003
de la Hoz Franco, E. A. and P. Budy. 2004. Effects of biotic and abiotic factors on the distribution of native cutthroat trout along the Logan River, Utah. Western Chapter of American Fisheries Society, Salt Lake City, UT. March 3, 2004.	March 2004
Zarnetske, P.S., T.C. Edwards, Jr., and G.G. Moisen. Pushing the envelope: habitat classification modeling with incomplete data. Poster presented at the 91st Annual Meeting of the Ecological Society of America, Memphis, Tennessee.	August 2006
Zarnetske, P. S., T. C. Edwards, Jr., and G. G. Moisen. Wildlife Habitat Suitability Modeling with Incomplete Data: Incorporating Ecological Pseudo-Absence Points. Poster presented at the Utah Wildlife Society 2006 Annual Meeting, Moab, Utah.	March 2006
Zarnetske, P. S., T. C. Edwards, Jr., and G. G. Moisen. Modeling forest bird species' likelihood of occurrences with FIA and LANDFIRE vegetation models and generated pseudo-absence points. Paper presented at the Seventh Annual Forest Inventory And Analysis Symposium, Portland, Maine.	October 2005
Zarnetske, P. S., T. C. Edwards, Jr., and G. G. Moisen. Bioregional species distribution modeling with pseudo-absence points. Poster presented at the 21st Annual Symposium of the International Association for Landscape Ecology, U.S. Regional Association, San Diego, California.	March 2006
Zarnetske, P. S., T. C. Edwards, Jr., and G. G. Moisen Modelling forest bird species habitat with known presence points and generated psuedo-absence points in Utah. Paper presented at the 90th Annual Meeting of the Ecological Society of America, Montreal, Canada. (Winner of the E. Lucy Braun Award for Best Student Poster)	August 2005
Zakrajsek E. J. and J. A. Bissonette. Nocturnal Bird-Avoidance Modeling with Mobile-Marine Radar. Bird Strike Committee Conference, Calgary, Alberta 27-30 August 2001	August 2001
Wright, E., G.P. Thiede, and P. Budy. 2016. Determining long-term trends in trout populations using standard stream electrofishing methods: Is the extra pass worth it? Poster presentation, Annual Meeting of the Utah Chapter of the American Fisheries Society, Altamont, Utah, 16 – 17 March 2016.	March 2016	Obtaining robust fish abundance and trend estimates are critical for sound management but can be a cost and time burden on fish management agencies using standard electrofishing methods and estimation techniques. Our results have implications for planning and maintaining long-term monitoring and evaluation programs, in particular when resources are limited as they often are for non-charismatic imperiled fishes of little economic or recreational value.
Wood, J.R., and P. Budy. 2008. Spawning ecology and early life-stage survival influence the distribution of brown trout in a native cutthroat trout stream. American Fisheries Society, Utah Chapter Annual Meeting, Moab, Utah, February, 2008. Best Student Oral Presentation Award ($250).	February 2008
Wood, J.R., and P. Budy. 2008. Spawning ecology and early life-stage survival influence the distribution of brown trout in a native cutthroat trout stream. American Fisheries Society, Idaho Chapter Annual Meeting, Post Falls, Idaho, February 6, 2008.	February 2008
Wood, J. R., P. Budy, G. P. Thiede. 2007. The spawning ecology and early life stage survival of brown trout in a native cutthroat trout stream. American Fisheries Society, Bonneville Chapter Annual Meeting. Logan, Utah, March 20, 2007.	March 2007
Wood, J. R. and P. Budy. 2007. The role of environmental factors in determining the spawning density and distribution of brown trout along an elevational gradient. American Fisheries Society, 137th Annual Meeting. San Francisco, September 5, 2007.	September 2007
Winters, L.K., P.Budy, and G.P. Thiede. 2013. Exploring the potential for biological control of an explosive prey base by a suite of three predatory fishes in a high elevation, western reservoir. Western Division Annual Meeting, American Fisheries Society, Boise, Idaho, 15-18 April 2013.	April 2013	This study examined the potential of predatory salmonids as biological control agents of an explosive prey base. The work will aid managers in implementing an efficient stocking strategy to optimize sport fish growth and performance, control prey species, and enhance and maintain angler satisfaction of high elevation western reservoirs.
Winters, L.K., P. Budy, and G.P. Thiede. 2013. Scofield Reservoir: exploring the potential for biological control of an explosive prey base by three top predatory fishes. Annual Meeting, Utah Chapter of the American Fisheries Society, Wahweap, Utah, 26-29 March 2013.	March 2013	This study examined the potential of predatory salmonids as biological control agents of an explosive prey base. The work will aid managers in implementing an efficient stocking strategy to optimize sport fish growth and performance, control prey species, and enhance and maintain angler satisfaction of high elevation western reservoirs.
Winters, L., P. Budy, and G.P. Thiede. 2012. Quantifying the potential for biological control of an explosive prey base by predatory fishes in a novel food web of a high elevation, western reservoir. American Fisheries Society, National Meeting, August 19-23, 2012, Minneapolis, MN.	August 2012
Winters, L., P. Budy and G.P. Thiede. 2013. Exploring the potential for biological control of an explosive prey base by a suite of three predatory fishes in a western reservoir. 143rd Annual Meeting of the American Fisheries Society, Little Rock, AR, 8-12 September 2013.	September 2013	This study examined the potential of predatory salmonids as biological control agents of an explosive prey base. The work will aid managers in implementing an efficient stocking strategy to optimize sport fish growth and performance, control prey species, and enhance and maintain angler satisfaction of high elevation western reservoirs.
Winters, L., P. Budy and G.P. Thiede. 2013. Exploring the potential for biological control of an explosive prey base by a suite of three predatory fishes in a high elevation, western reservoir. Spring Runoff Conference, Logan, UT, 9-10 April 2013.	April 2013	This study examined the potential of predatory salmonids as biological control agents of an explosive prey base. The work will aid managers in implementing an efficient stocking strategy to optimize sport fish growth and performance, control prey species, and enhance and maintain angler satisfaction of high elevation western reservoirs.
Winters, L. P. Budy, and G.P. Thiede. 2012. Investigating food web interactions and exploring the potential for biological control of three top predatory fishes in a high elevation, western reservoir. Poster Presentation. Utah Chapter, American Fisheries Society, Annual Meeting, March 26-29, 2012, Bullfrog, UT	March 2012
Wilson, T.L., and T.C. Edwards, Jr. Navigating the methodological landscape: modeling detection in space. Offered paper, 2011 Meeting of the U.S. Chapter of the International Association for Landscape Ecology, Portland, Oregon, 4/5/2011.	April 2011
Wilson, T., and J. A. Bissonette. 2006. Moving beyond area-density relationships- a challenge for conservation planning. US-IALE, San Diego, CA, 31 March.	March 2006	Wilson, T., and J. A. Bissonette. 2006. Moving beyond area-density relationships- a challenge for conservation planning. US-IALE, San Diego, CA, 31 March.
Wilson, T., J. Odei, M. Hooten, and T. C. Edwards, Jr. Hierarchical spatial models for pygmy rabbit distribution and abundance. Offered paper, 2009 Meeting of the U.S. Chapter of the International Association for Landscape Ecology, Snowbird, Utah, 4/13/2009.	April 2009
Wilson, T. L., and T. C. Edwards, Jr. Evaluating habitat use and connectivity using occupancy and density indices. Poster presented at the 2007 US International Association of Landscape Ecology, Tucson, Arizona, USA.	April 2007	NA
Wilson, T. L., M. B. Hooten, and T. C. Edwards, Jr. Improving habitat models for rare and inconspicuous species: A multi-part conditional approach. Poster presented at the 93rd Annual Meeting of the Ecological Society of America, Milwaukee, Wisconsin, 8/6/08.	August 2006
Wilson, T. L., E. J. Johnson, and J. A. Bissonette. 2005. Supplementation and sagebrush habitat specialists in patchy mountainous landscapes. US-IALE, Syracuse N.Y. 2005 14 March.	March 2005	NA
Wilson, T. L, and T. C. Edwards, Jr.. Effects of seismic exploration on pygmy rabbits. Offered paper, 16th Annual Wildland Shrub Symposium, Logan, Utah, 5/18/10.	May 2010
Wilson, T. L, and T. C. Edwards, Jr. Spatial patterns of burrow use by pygmy rabbits. Offered paper, 2010 Meeting of the U.S. Chapter of the International Association for Landscape Ecology, Athens, Georgia, 4/7/10.	April 2010
Wilson, T. L, and T. C. Edwards, Jr. Multiscale investigations of pygmy rabbit spatial ecology. Invited paper, Patuxent National Wildlife Research Center, Laurel, Maryland, 4/22/10.	April 2010
White, H., Howe, F., Bissonette, J., "Riparian bird-habitat association models: A framework for developing management and restoration guidelines in Utah", The Wildlife Society, Snowbird, UT. 2010 - ORAL	October 2010
White, H., Bissonette, J.A, Howe, F.P., "Developing Riparian Bird Habitat Association Models and Management Guidelines", Fourth International Partner's In Flight Conference, McAllen, TX, February 2008. - POSTER	February 2008
White, H., Bissonette, J., Howe, F. Developing Riparian Bird Habitat Association Models and Management Guidelines in Utah" US International Association for Landscape Ecology, 2009 Annual Meeting, Snowbird, UT, April 14, 2009. ORAL	April 2009
White, H., Bissonette, J., Howe, F. "Riparian bird habitat association models and management guidelines in Utah". Ecological Society of America, 2009 Annual Meeting, Albuquerque, NM. August 2009. POSTER.	August 2009
West, R., G.P. Thiede, and P. Budy. 2020. Diet overlap between two top predators in Pyramid Lake, Nevada. Poster presentation. Annual Meeting of the Utah Chapter of the American Fisheries Society, St. George, Utah, 26 – 27 February 2020.	February 2020	This work has important findings and implications for the management of the fishery in Pyramid Lake, Nevada
West, R., G.P. Thiede, and P. Budy. 2018. Spatial variation of sculpin (Cottus spp.) diets along the longitudinal gradient in the Logan River, Utah. Poster presentation at the Utah Chapter of the American Fisheries Society annual meeting, Ogden, Utah. 13-15 March 2018.	March 2018	Sculpin are benthic fishes widely distributed across the Intermountain West and play an important role in the stream food web and native fish community. Our goal is to compare and contrast sculpin diets across years, location, and body size and investigate potential drivers of diet differences across locations on the Logan River, Utah.
West, R. N. Barrett, G.P. Thiede, and P. Budy. 2019. Feeding selectivity and diet overlap of coexisting Lake Trout and Arctic Grayling in two oligotrophic arctic lakes Poster presentation: Joint Meeting of the American Fisheries Society and The Wildlife Society, Reno, Nevada, September 2019.	October 2019	Competition may be intensified in unproductive arctic lakes where resource availability is low. To alleviate competition and enable coexistence, Arctic Grayling and Lake Trout may partition resources and thereby reduce niche overlap. Our goal was to determine prey selectivity (i.e., diet electivity) and quantify niche overlap between these species in two arctic lakes. The results from this study improve our understanding of factors (i.e., resource partitioning) enabling the coexistence of thes
West, R. N. Barrett, G.P. Thiede, and P. Budy. 2019. Feeding ecology and diet overlap of coexisting lake trout and arctic grayling in two open and connected arctic lakes. Poster presentation: Annual Meeting of the Utah Chapter of the American Fisheries Society, Provo, Utah, 12 – 14 March 2019.	March 2019	The results from this study improve our understanding of factors (i.e., resource partitioning) enabling the coexistence of arctic grayling and lake trout in oligotrophic arctic lakes. With changes in resource availability as a result of a changing climate, competition between these species may very likely intensify.
Weedop. D.H., Z. Ahrens, G.P. Thiede, R.N. Barrett, and P. Budy. 2019. A Spatial Comparison of Diets of Predatory Fishes Above and Below the Paiute Farms Waterfall in the San Juan River, Utah. Poster Presentation: Annual Meeting of the Utah Chapter of the American Fisheries Society, Provo, Utah, 12 – 14 March 2019	March 2019	Our research sheds light on the challenging management trade-offs of novel ecosystems; the barrier should be removed for native fish passage but at the same time is protecting the upper river from nonnative predators.
Walsworth, T.E., Budy, P., Wheaton, J., Macfarlane, W.W., Shahverdian, S., Thiede, G.P., Keller, D., Goodell, J., and Jimenez, J. Harnessing process-based restoration to improve in-stream and riparian habitat in the Price River, Utah. Oral presentation: Utah Chapter American Fisheries Society Annual Meeting, Provo, Utah, March 12-14, 2019.	March 2019	Providing an update to fisheries managers, researchers and restoration practitioners regarding the Price River Restoration Project. Preliminary monitoring data as well as proposed restoration activity design will be presented.
Walsworth, T., P. Budy, and G. Thiede. 2011. Crowded niche space: the impact of novel competitors and predators on the growth rates of endemic desert fishes. Oral Presentation, American Fisheries Society Annual Meeting, September 5-8, 2011. Seattle, WA.	September 2011
Walsworth, T. P. Budy, and G.P. Thiede. 2010. A Patch Approach to Understanding the Effect of Stream Degradation on Food Web and Population Structure of Imperiled Fishes. Invited Budy Presentation, ‘Trash fish or native treasures, …Three Species’ Special Symposium, American Fisheries Society, Western Division, Salt Lake City, April 20-23, 2010.	April 2010
Walsworth TE and Budy P. 2020. Rio Grande silvery minnow hydrobiological analysis: draft results. U.S. Bureau of Reclamation. January 27. Albuquerque, NM. USBR, Albuquerque Office.	January 2020	We present draft results of analyses examining the effect of interannual hydrologic variation on the endangered Rio Grande silvery minnow to collaborators and stakeholders. Feedback and discussions form this presentation will ultimately be incorporated into our final analyses and reports.
Walsworth TE and Budy P. 2020. Hydrologic drivers of distribution and abundance of the extremely imperiled Rio Grande silvery minnow. Oral presentation: Annual Meeting of the American Fisheries Society - Western Division. Vancouver, BC, Canada, April 12-15, 2020.	April 2020	We present an analysis of the relationship between Rio Grande silvery minnow population dynamics and interannual hydrologic variation. We then examine the probability of achieving conservation and recovery targets under alternative hydrologic conditions.
Walsworth TE and Budy P. 2020. Hydrologic drivers of distribution and abundance of the extremely imperiled Rio Grande silvery minnow. Annual Meeting of the Utah Chapter American Fisheries Society. St. George, UT. February 25-27, 2020.	February 2020	We examine the relationships between annual hydrologic conditions and the distribution and abundance of endangered Rio Grande silvery minnow in the Middle Rio Grande. We use the detected relationships to explore the probability of meeting sustainability and recovery goals under the current hydrologic regime.
Walsworth TE and Budy P. 2019. Final Review of Rio Grande silvery minnow Hydrobiological Objectives (HBO) Analyses. U.S. Bureau of Reclamation. February 28. Albuquerque, NM. USBR, Albuquerque Office	February 2019	We presented our review of the hydrobiological analyses underpinning the 2016 US Fish and Wildlife Service Biological Opinion for the effects of US Bureau of Reclamation water management activities on the endangered Rio Grande silvery minnow. The recommendations from this review will ultimately be incorporated into a novel analysis of the hydrologic drivers of silvery minnow dynamics.
Walsworth T., P, Budy, and G.P. Thiede. 2011. Degraded habitat and crowded niche space: understanding impacts of habitat loss and non-native fishes on endemic, riverine desert fishes. Presentation, Spring Runoff Conference, Logan, UT, March 29, 2011.	March 2011
W.C. Saunders, and P. Budy. 2012. Biotic resistance by native Bonneville cutthroat trout to the establishment of exotic brown trout is influenced by population density. Utah Chapter, American Fisheries Society, Annual Meeting, March 26-29, 2012, Bull Frog, UT.	March 2012
W. Carl Saunders, Stephen Klobucar, and Phaedra Budy. 2013. Seasonal Movement Dynamics by Burbot in Flaming Gorge Reservoir, UT-WY: An Invasive Fish Going the Distance. Annual Meeting of the Western Division of the American Fisheries Society, Boise, ID, April 15-18, 2013.	April 2013	This study examined the extent of seasonsal movements by burbot, an invasive species recently establised in the Green River drainage. Our findings will help managers identify spawning locations and account for fish movement in their management efforts.
Vatland, S., and P. Budy. 2005. Lake Powell (Utah-Arizona) food web dynamics: the effects of newly introduced gizzard shad. American Fisheries Society, National Meeting, Anchorage, AK.	September 2005
Vatland, S., and P. Budy. 2004. Using present and past data to model predator-prey dynamics in Lake Powell, Utah-Arizona: A bioenergetics approach. Utah State University - Water Initiative: Spring Runoff Conference, Logan, UT. March 26, 2004, Best Student Paper Award ($250).	March 2004
Vatland, S., and P. Budy. 2004. Using present and past data to model predator-prey dynamics in Lake Powell, Utah-Arizona: A bioenergetics approach. Invited Seminar for Reservoir Management Symposium. Western Chapter of American Fisheries Society, Salt Lake City, UT. March 3, 2004, Best Student Paper Award ($100).	March 2004
Vatland, S., P. Budy, and G. Thiede. 2005. Potential effects of gizzard shad on the pelagic food web of Lake Powell, Utah-Arizona: a bioenergetics approach. Bonneville Chapter of American Fisheries Society, Garden City, UT.	March 2005
Vatland, S., P. Budy, and G. Thiede. 2004. A bioenergetics approach to modeling predator-prey dynamics in Lake Powell, Utah-Arizona. Ecological Society of America, National, Portland, OR. August 4, 2004.	August 2004
VanDyke, E. and P. Budy. 2005. An assessment of the feeding relations between native and introduced trout in the Logan River: an ontogenetic perspective. Bonneville Chapter of American Fisheries Society, Garden City, UT. Undergraduate Research Project Sponsored by U.R.C.O (Undergraduate Research & Creative Opportunities- USU [$500]) and CNR ($400).	March 2005
Van Tatenhove, Aimee M., Stuber, Erica F., Rushing, Clark S. 2023. Modeling survival and connectivity of a migratory waterbird in a continuous-time framework. The Waterbird Society Annual Meeting, Fort Lauderdale, FL, USA.	October 2023	Novel analysis of connectivity of multiple geographic ranges of American white pelican across the full annual cycle
Van Tatenhove, A.M., J. Neill, R.E. Norvell, E.F. Stuber, C.S. Rushing. Scale-dependent population drivers inform waterbird management in an imperiled saline lake ecosystem. 2023 UT Chapter of the Wildlife Society Annual Meeting. March 8-10 Grand Junction, CO	March 2023	Multi-decadal population size analysis of American white pelican on Great Salt lake related to water levels, including population viability analysis under potential management scenarios.
Van Tatenhove, A. M., Horton, K. G., Stuber, E.F., and Rushing, C. S. 2022. Weather radar as a tool to quantify local airspace-use of a large migratory waterbird. The Waterbird Society Annual Conference. Corpus Christi, TX. 31 Oct. - 4 Nov. 2022	November 2022	Demonstrates the use of weather radar to detect American white pelicans in flight
Thompson, P., P.A. Weber, P. Budy, and S. Mckay. 2010. A comparative investigation of population size, structure, movement patterns and vital rates between two populations of bluehead sucker (Catostomus discobolus) in the Weber River, Utah: Identifying limiting factors to guide conservation. Invited Presentation, ‘Trash fish or native treasures, …Three Species’ Special Symposium, American Fisheries Society, Western Division, Salt Lake City, April 20-23, 2010.	April 2010
Thiede, G.P., S. Vatland, and P. Budy. 2004. Predator-prey dynamics in Lake Powell: a bioenergetics approach. American Fisheries Society, National, Madison, Wisconsin. August 25, 2004.	August 2004
Thiede, G.P., P. Budy, and P. McHugh. 2005. Factors affecting the status of endemic cutthroat trout in the Logan River, Utah. Bonneville Chapter of American Fisheries Society, Garden City, UT.	March 2005
Thiede, G.P., P. Budy, and B. Laub. 2017. The effect of lake level on forage and Lahonton Cutthroat Trout in Pyramid Lake, Nevada. Invited Symposium: Resiliency and Vulnerability of Lentic Ecosystems and Communities to Climate Change and Multi-year Drought: What is known and what remains Annual Meeting of the Western Division of the American Fisheries Society, 23 May, 2017, Missoula, MT.	May 2017	The effect of lake level on forage and Lahonton Cutthroat Trout in Pyramid Lake, Nevada. Invited Symposium: Resiliency and Vulnerability of Lentic Ecosystems and Communities to Climate Change and Multi-year Drought: What is known and what remains.
Thiede, G.P., P. Budy, P. McHugh, and E. A. de la Hoz. 2003. Evaluating the effects of fish movement on the spread and prevalence of disease in the Logan River, Utah, USA. American Fisheries Society, Quebec, CAN.	August 2003
Thiede, G.P., P. Budy, C. Meredith, and W.C. Saunders. 2012. Exotic brown trout impacts: the case of a novel predator. Utah Chapter, American Fisheries Society, Annual Meeting, March 26–29, 2012, Bullfrog, UT.	March 2012
Thiede, G.P., N. Heredia, and P. Budy. 2018. The importance of the tui chub forage base and declining lake levels on the growth and carrying capacity of Lahontan cutthroat trout in Pyramid Lake, Nevada. Oral presentation at the Western Division meeting of the American Fisheries Society, Anchorage Alaska, 21 - 24 May 2018.	May 2018	Our results have important implications for the continued success of this valuable and prospering native sport fishery and the recovery of an important population of Lahontan cutthroat trout (LCT); declining Pyramid Lake levels may have significant indirect effects on LCT in the future, manifested through a declining tui chub forage base.
Thiede, G.P., H. Mohn, P. Budy, and B. Roper. 2015. International Symposium. Evaluating movement and spatial population structure for stream-dwelling cutthroat trout: implications for management and conservation practices. Advances in the Population Ecology of Stream Salmonids IV. 25-29 May, Girona, Spain.	May 2015	Our research indicates that current angling regulations, high spring flows which limit angler access, and the propensity of catch-and-release angling may be sufficient to maintain population persistence as long as exotic and competitively superior brown trout do not expand into high-density, cutthroat trout reaches.
Thiede, G.P., B. Laub, N. Heredia, and P. Budy. 2017. The effect of lake level on forage and Lahonton Cutthroat Trout in Pyramid Lake, Nevada. Oral presentation at the Western Division AFS annual meeting in Missoula, Montana. 22 - 26 May 2017.	May 2017	This work describes the importance of lake level and abiotic conditions to the distribution and abundance of forage fish and piscivores in Pyramid Lake, Nevada.
Thiede, G.P., B. Laub, N. Heredia, and P. Budy. 2017. The effect of lake level on forage and Lahonton Cutthroat Trout in Pyramid Lake, Nevada. Oral presentation at Western Division American Fisheries Society meeting in Missoula, MT. 22 - 26 May 2017.	May 2017	Pyramid Lake, Nevada is one of the last remaining strongholds for lacustrine Lahontan cutthroat trout. Information regarding factors that influence their abundance is important both ecologically and economically.
Thiede, G.P. , P. Budy, P. MacKinnon, D. Speas, M. Breen, and K. McAbee. 2014. Frequent tributary usage by endangered and large-river fishes of the Upper Colorado River basin. American Fisheries Society, Western Division, 7-11 April, 2014, Mazatlán, Mexico.	April 2014	A study of the endangered and large-river fishes which frequently use the tributaries of the Upper Colorado River basin. This data can provide helpful information for management issues.
The potential for nongame fish species to explode with detrimental effects on sport fisheries in Utah has prompted managers to shift some stocking programs from exclusively rainbow trout, to include tiger trout and/or Bear Lake cutthroat trout as potential biological controls. However, inter-specific interactions among this unusual complex of predatory species are not well understood, and there is concern that the overall effect may be a decrease of overall trout condition. In Scofield Reservoir rainbow trout niche space overlaps substantially with Utah chub (nongame), indicating a similar trophic position. Large tiger trout and cutthroat trout occupy top trophic positions indicating considerable niche overlap and possibly direct competition for food and space. To evaluate the potential for negative interactions among these three species, we designed laboratory experiments to assess agonistic behavior. Differences in agonistic behavior between rainbow, cutthroat, and tiger trout were determined with replicated, pair-wise treatments of one fish of each species together in a tank. We then observed the number of chases and contacts occurring between species. In all treatments rainbow trout initiated significantly (p <<0.000) more aggressive interactions (primarily chases) than tiger or cutthroat trout. Feeding (pre-post) did not have a significant effect on agonistic behavior for any species; however relative differences in fish size did appear to influence the outcome of the interaction for tiger trout. Understanding agonistic behavior provides important information for determining niche overlap between, and resource availability for, these sympatrically stocked species. Hafen, Lisa Winters, and Phaedra Budy. 2013. Agonistic behavior between three species of commonly stocked salmonids in Utah reservoirs. 2013 Western Division Annual Meeting, April 15 - 18, 2013.	April 2013	This study examined direct inter-specific competition between cutthroat trout, rainbow trout, and tiger trout. It will aid managers in determining niche overlap and resource availability for sport fishes in reservoirs where these species occur.
Switalski, A., J. A. Bissonette, T. H, Deluca, C. H. Luce, and M. A. Madej. 2003. Wildland road removal: Research needs. International Conference on Ecology and Transportation, Lake Placid, New York. 24-29 August 2003.	August 2003
Switalski, A., J. A. Bissonette, T. H, Deluca, C. H. Luce, and M. A. Madej. 2003. Watershed benefits from road removal. 17th Annual Meeting of the Society for Conservation Biology, Duluth Minnesota, 28 June- 2 July 2003.	June 2003
Stuber, E.F., and J.J. Fontaine. 2022. Precision conservation and management: scale-explicit analyses for organism-environment relationships. The Wildlife Society - Utah Chapter Virtual Conference	March 2022	Demonstrates that incorporating spatial scale explicitly into models of organism-environment relationships improves model performance, and enables the ability make optimal, spatially precise habitat management plans
Stuber, E.F., R. Norvell, and L.F. Gruber. Data integration to inform species’ status and trend estimates using structured surveys and eBird observations. 2023 UT Chapter of the Wildlife Society Annual Meeting. March 8-10 Grand Junction, CO	March 2023	Statistical methods development to combine Integrated Monitoring of Bird Conservation Region survey data with eBird citizen science observations.
Stuber, E.F., O. Robinson, E. Bjerre, M. Otto, B. Millsap, G. Zimmerman, V. Ruiz-Gutierrez. 2021. Validating the performance of citizen science establishes novel evidence base for conservation decision-making. American Ornithological Society and Society of Canadian Ornithologists Joint Virtual Meeting 9-13 August	August 2021	Demonstrates that carefully filtered citizen science information can be 'ground truthed' against designed, professionally collected data using case study with Bald Eagles
Strohm, D., and P. Budy. 2015. Matching Watershed and Otolith Chemistry to Establish Natal Origin of an Endangered Lake Sucker. 145th Annual Meeting of the American Fisheries Society, Portland, OR, August 16-20, 2015	August 2015	This research uses otolith microchemistry to determine the natal origin of the endangered June Sucker endemic to Utah Lake, Utah. This is important as it provides a tool for managers to evaluate is habitat restoration results in natural recruitment, and track progress toward recovery.
Strohm, D., and P. Budy. 2015. Fish Forensics: Using Otolith Microchemistry to Decode the Mystery of Natal Origin of an Endangered Lake Sucker. Annual Meeting Utah Chapter American Fisheries Society Moab, Utah, 24 – 26 March 2015.	March 2015	We determined natal origin of endangered June Sucker in tributaries surrounding their endemic habitat, Utah Lake, Utah. This research will aid in recovery efforts by determining if natural recruitment is occurring as a result of habitat restoration.
Stout, J.B., P. Budy, M. Conner, P. MacKinnon, and M. McKinstry. 2018. Determining fish status from mobile PIT antenna detections: Preliminary study results. 39th Annual Researcher’s Meeting of the Upper Colorado River Endangered Fish Recovery Program and the San Juan River Basin Recovery Implementation Program. Vernal, UT. January 23, 2018.	January 2018	This work describes a novel application of PIT tag technology and its utility in the monitoring of fish populations.
Stout, J.B., P. Budy, M. Conner, P. MacKinnon, and M. McKinstry. 2017. Wanted: Dead or Alive. Determining fish status from mobile PIT antenna detection data. 42nd Annual Meeting of the Western Division of the American Fisheries Society. Missoula, MT. May 22, 2017.	May 2017	Describes how data from new application of PIT tag technology can improve the estimation of vital rates of fishes. Improved estimates can help to inform the recovery status of endangered fishes on the San Juan River.
Stout, J.B., P. Budy, M. Conner, P. MacKinnon, and M. McKinstry. 2017. PIT tag movement in the absence of fish: Preliminary results from a mobile PIT tag antenna study. 38th Annual Researcher’s Meeting of the Upper Colorado River Endangered Fish Recovery Program and the San Juan River Basin Recovery Implementation Program. Grand Junction, CO. January 11, 2017.	January 2017	This study examined the movement of PIT tags, not in a fish, in a river system. The results will help us to develop a classification system for detections of PIT tags with a mobile floating PIT tag antenna system.
Stout, J.B., P. Budy, M. Conner, P. MacKinnon, and M. McKinstry. 2017. Improving our ability to estimate vital rates of endangered fishes on the San Juan River using novel applications of PIT tag technology. Joint Meeting of the Colorado-Wyoming and Utah Chapters of the American Fisheries Society. Grand Junction, CO. February 22, 2017.	February 2017	Describes how data from new application of PIT tag technology can improve the estimation of vital rates of fishes. Improved estimates can help to inform the recovery status of endangered fishes on the San Juan River.
Stout, J.B., M. Connor, P. Budy, M. McKinstry, and P. MacKinnon. 2016. Improving our ability to estimate vital rates of endangered fishes on the San Juan River using novel applications of PIT tag technology. 2016 Annual Meeting of the Utah Chapter of the American Fisheries Society. Altamont, UT. March 15-17,2016.	March 2016	Describes how data from new application of PIT tag technology can improve the estimation of vital rates of fishes. Improved estimates can help to inform the recovery status of endangered fishes on the San Juan River.
Stout, J.B., Conner, M.M., Yackulic, C., Budy, P., Mackinnon, P., and M. Mckinstry. 2019. Gone, but not forgotten: Bias and error, the legacy of ghost tags in aquatic systems. Oral presentation: Annual Meeting of the Utah Chapter of the American Fisheries Society, Provo, Utah, 12-14 March 2018.	March 2019	This work shows the problems that can arise when using data from mobile PIT tag antennas and how they can be dealt with analytically.
Stoner, D.C., J.O. Sexton, A. Sims, H. Bernales, J. Nagol, D.J. Mattson, K.E. Ironside, K. Longshore, D.M. Choate, and T.C. Edwards, Jr. Weather, plants, and large mammals: satellite observations of vegetation phenology inform wildlife management in the Intermountain West. Offered paper, 2015 Annual Meeting of the Utah Chapter of The Wildlife Society, Moab, Utah, 3/19/15.	March 2015	Here we evaluated the relationship between three major tropic levels focusing on two widely distributed consumers of management interest; mule deer (Odocoileus hemionus) and their principle predator, the cougar (Puma concolor). The result was a model of how deer and cougar abundance vary with respect to growing-season primary productivity. NDVI values during the mule deer birthing season were most strongly influenced by late fall and spring precipitation.
Stoner, D., and T.C. Edwards. Predation-forage trade-offs in anthropogenic landscapes: behavioral response of an obligate carnivore to human activities. Invited paper, 4th North American Congress for Conservation Biology, Toronto, ON, Canada, 7/25/2018.	July 2018	Evaluated behavioral responses of cougar Puma concolor to anthropomorphic change in landscapes.
Stoner, D., and T.C. Edwards, Jr. Using remotely sensed indices of primary productivity to evaluate large mammal abundance and movement in the arid Southwestern United States. Invited paper, Forty-sixth Annual Fall Meeting of the American Geophysical Union, San Francisco, California, 12/10/13.	December 2013	Projected climatic shifts in the arid southwest of North America imply changes in vegetation biomass and phenology, and therefore mammalian distributions. Here we evaluate how the distribution of primary productivity and phenological rhythms influence abundance and seasonal movements of three widely distributed ungulate species, mule deer, elk, and desert bighorn sheep, and their principal predator, cougar.
Stoner, D. T. C. Edwards, Jr., J. O. Sexton, J. Nagol, and H. Bernales. Ungulate reproduction and plant phenology on the Colorado Plateau. Offered paper, 2014 Annual Meeting of the Utah Chapter of the Wildlife Society, St. George, UT, 3/20/14.	March 2014	We used long-term datasets collected by the Utah Division of Wildlife Resources and Arizona Game and Fish Department to evaluate demographic responses of mule deer, elk, and bighorn sheep to variation in summer range productivity. We discuss the implications of ungulate physiology, interspecific competition, and vulnerability to predation in light of changing climate and land use patterns.
Stoner, D. C., J. O. Sexton, J. Nagol, K. E. Ironside, D. M. Choate, K. M. Longshore, D. J. Mattson, and T. C. Edwards, Jr. Ecosystem Responses to Plant Phenology across Scales and Trophic Levels. Invited paper, 2015 Annual Meeting of the American Geophysical Union, San Francisco, California, 12/15/15.	December 2015	We related the behavior, demography, and distribution of mammalian herbivores and their principal predator to remotely sensed vegetation and climatological indices across the western United States for the period 2000-2014. Across scales, terrain and topographic position moderates the effects of climatological drought on primary productivity, resulting in differential susceptibility among plant functional types to water stress.
Stoner, D. C., J. O. Sexton, J. Nagol, K. E. Ironside, D. M. Choate, K. M. Longshore, and T. C. Edwards, Jr. Coupling mammalian demography to climate through satellite time series of plant phenology. Invited paper, AGU Fall Meeting 2016, San Francisco, CA, 12/12/2016.	December 2016	We relate the behavior, demography, and spatial distribution of large mammalian herbivores and their principal predator to remotely sensed indices of climate and vegetation across the western United States from 2000-2014. Our analyses suggest that increased climatological variability will contribute to fluctuations in the composition and phenology of plant communities, which in turn will propagate through consumer trophic levels, manifesting as increased home range area, shifts in the timing of
Stoner, D. C., J. O. Sexton, J. Nagol, H. H. Bernales, S. A. Sims, K. E. Ironside, K. Longshore, D. M. Choate, and T. C. Edwards, Jr. Ecosystem responses to plant phenology across scales and trophic levels. Offered poster, 2016 Annual Meeting of the Utah Chapter of The Wildlife Society, St. George, Utah, 3/23/2016.	March 2016	We related the behavior, demography, and distribution of mammalian herbivores and their principal predator to remotely sensed vegetation and climatological indices across the western United States for the period 2000-2014. Across scales, terrain and topographic position moderates the effects of climatological drought on primary productivity, resulting in differential susceptibility among plant functional types to water stress.
Stoner, D. C., J. O. Sexton, D. M. Choate, J. Nagol, S. A. Sims, H. H. Bernales, K. Hersey, J. Shannon, D. J. Mattson, K. E. Ironside, K. Longshore, and T. C. Edwards, Jr. Mule deer abundance, cougar home range size, and predator-prey density across a productivity gradient. Offered paper, 2016 Annual Meeting of the Utah Chapter of The Wildlife Society, St. George, Utah, 3/23/2016.	March 2016	Ungulates are the major prey resource for large carnivores, and so prey abundance constrains carnivore spatial requirements and density. Here we evaluated the relationship between three major trophic levels focusing on two widely distributed species of management interest; mule deer (Odocoileus hemionus) and their principle predator, the cougar (Puma concolor).
Stoner, D. C., J. O. Sexton, D. M. Choate, J. Nagol, S. A. Sims, H. H. Bernales, K. Hersey, J. Shannon, D. J. Mattson, K. E. Ironside, K. Longshore, and T. C. Edwards, Jr. Mule deer abundance, cougar home range size, and predator-prey density across a productivity gradient. Offered paper, 2016 Annual Meeting of the Utah Chapter of The Wildlife Society, St. George, Utah, 3/23/2016.	March 2016	Here we evaluated the relationship between three major trophic levels focusing on two widely distributed species of management interest; mule deer (<i>Odocoileus hemionus</i>) and their principle predator, the cougar (<i>Puma concolor</i>). We evaluated growing-season primary productivity on high elevation summer ranges using the Normalized Difference Vegetation Index (NDVI).
Stoner, D, J. O. Sexton, H. H. Bernales, J. Nagol, D. M. Choate, K. E. Ironside, K. M. Longshore, and T. C. Edwards, Jr. A statewide evaluation of mule deer abundance, cougar home range size, and predator-prey density. Presented paper, 2017 Utah Chapter of the Wildlife Society Annual Meeting, Bryce Canyon, Utah, 4/22/2017.	April 2017	We measured growing-season primary productivity on mule deer fawning ranges with the Normalized Difference Vegetation Index (NDVI), which was used to predict variation in mule deer abundance among wildlife management units in Utah. We used cougar GPS data sampled from the Great Basin, Colorado Plateau, and Mojave Desert ecoregions to measure variation in home range size with respect to changes in primary production.
Speas, D, P.MacKinnon.2020. Entrainment of endangered fish in the Green River Canal, Utah, 2013-2019. 40th annual Upper Colorado River Endangered Fish Recovery Program Researcher's Meeting, Durango CO, 14-15 January 2020.	January 2020	Summary of entrainment data collected prior to a fish exclusion weir built on the Green River Canal, Green River UT. The canal was entraining up to 700 endangered fish per year. The exclusion weir kept 100% of tagged fish out of the canal and returned to the Green River in its first year of operation.
Solokas, M. R. Al-Chokhachy, P. Budy, Z. Feiner, Timothy Walsworth, and Olaf P Jensen. 2022. Harvesting and synthesizing long-term data sets to determine body size changes in salmonid populations across the northern hemisphere. Joint Aquatic Sciences Meeting, Grand Rapids, Michigan, May 14-20. Oral Presentation.	May 2022	Anadromous, marine, and freshwater species likely vary in their responses to climate change. Due to the implications of body size changes across spatial scales, understanding how organisms are changing is crucial for the conservation and management of natural systems.
Solberg, J., K. Hersey, D. Summers, and E.F. Stuber. 2022. Accounting for Ecological Neighborhoods to Understand Mule Deer Abundance on Restored Habitat in Utah. The Wildlife Society Annual Conference. Spokane, WA. 6-10 Nov. 2022	November 2022	Investigates the relevance of landscape context of habitat restoration treatments on deer relative density.
Solberg, J., K. Hersey, D. Summers, and E. F. Stuber. 2023. Accounting for Ecological Neighborhoods to Understand Mule Deer Abundance on Restored Habitat in Utah. The Wildlife Society Annual Meeting. Louisville, KY, USA.	November 2023	Highlights large-scale landscape composition as a moderating factor of mule deer abundance on restored habitat
Sims, S.A., D. Stoner, T.C. Edwards, Jr., J. Nagol, J.O. Sexton, K.E. Ironside, D.J. Mattson, D.M. Choate, and K. Longshore. Mountain lion (Puma concolor) home-range size and the normalized difference vegetation index: using a landscape productivity index as a surrogate for prey density. Offered paper, 2014 Annual Meeting of the Utah Chapter of the Wildlife Society, St. George, Utah, 3/20/14.	March 2014	Our objective was to evaluate the relationship between mountain lion home range size and indices of primary productivity.We found a negative relationship between NDVI and mountain lion space-use, with Mojave Desert females encompassing home ranges greater than an order of magnitude larger than the smallest female home ranges (700 vs. 30 km²).
Sims, S.A., D. Stoner, H. Bernales, K. Hersey, J. Nagol, J.O. Sexton, and T.C. Edwards, Jr. Modeling the relationship between mule deer (Odocoileus hemionus) population dynamics and primary productivity. Offered paper, 2015 Annual Meeting of the Utah Chapter of The Wildlife Society, Moab, Utah, 3/19/15.	March 2015	Our work evaluates mule deer population dynamics by modeling the link between vital rates and primary productivity. Demographic variables used in these study include estimates of abundance, survival, fecundity, and fawn to doe ratios at a wildlife management unit (WMU) scale covering the state of Utah.
Sims, S.A, D. Stoner, D. Koons, H. Bernales, and T.C. Edwards, Jr. Short-term forecasting of mule deer survival: an adaptive modelling process. Presented paper, 2017 Utah Chapter of the Wildlife Society Annual Meeting, Bryce Canyon, Utah, 4/22/2017.	April 2017	In this study, we utilized an extensive survival dataset collected across the state of Utah for mule deer (Odocoileus hemionus) to assess the ability to project estimates of survival into the short and long-term future. We also provide a framework of increasing the accuracy of these estimates overtime by rapidly integrating new predictor variable and survival data into the models as it becomes available, a process referred to as adaptive modelling.
Sims, S.A, D. Stoner, D. Koons, H. Bernales, and T.C. Edwards, Jr. Adaptive modelling: a process for short-term forecasting of mule deer survival. Presented paper, Western Association of Fish and Wildlife Agencies, 12th Western States and Provinces Deer and Elk Workshop, Sun Valley, Idaho, 5/2/2017.	May 2017	The goal of our study was to develop models for forecasting mule deer (Odocoileus hemionus) survival for a short time into the future (~10 months). Furthermore, we demonstrate the ability to reduce error and uncertainty in forecast models through adaptive techniques.
Sims, S. A., D. Koons, D. Stoner, H. Bernales, K. Hersey, J. Nagol, J. O. Sexton, T. C. Edwards, Jr. Estimating mule deer demographic dynamics within Utah using an integrated modeling framework. Offered paper, 2016 Annual Meeting of the Utah Chapter of The Wildlife Society, St. George, Utah, 3/23/16.	March 2016	This study focuses on applying the Anderson-Gill (A-G) version of the Cox proportional hazard modeling method and integrated projection models (IPM’s) to a mule deer (Odocoileus hemionus) dataset collected by the Utah Division of Wildlife Resources (UDWR). The dataset includes raw estimates of survival and fawn to doe ratios at a wildlife management unit (WMU) scale covering the state of Utah.
Sims, S. A., D. Koons, D. Stoner, H. Bernales, K. Hersey, J. Nagol, J. O. Sexton, T. C. Edwards, Jr. Estimating mule deer demographic dynamics within Utah using an integrated modeling framework. Offered paper, 2016 Annual Meeting of the Utah Chapter of The Wildlife Society, St. George, Utah, 3/23/16.	March 2016	It is important to be able to produce accurate demographic estimates from imperfect data. Modeling methods are becoming more advanced over time at incorporating imperfect data and providing reliable results. This study focuses on applying the Anderson-Gill (A-G) version of the Cox proportional hazard modeling method and integrated projection models (IPM’s) to a mule deer (<i>Odocoileus</i> <i>hemionus</i>) dataset collected by the Utah Division of Wildlife Resources (UDWR).
Simmons, L, S.L. Klobucar, and P. Budy. 2016. Big fish in a small pond or small fish in a small pond? Investigating arctic char dimorphism with consideration of predator prey interactions. Oral presentation. Annual meeting of the Utah Chapter of the American Fisheries Society, Altamont, UT, 15 - 17 March, 2016.	March 2016	We describe arctic char trophic status using diet and stable isotope analyses to attempt to infer the difference in arctic char size across two lake systems. These lakes are likely to be impacted by a warmer climate; thus, a better understanding of lake trophic structure and variability will help us predict how fish communities may change in the future.
Shamo, T., P. Budy, G.P. Thiede, and C. Penne. 2018. Understanding the contemporary trout sport fishery of the Logan River, Utah: what factors best explain angler catch rates and satisfaction. Oral presentation at the Utah Chapter of the American Fisheries Society annual meeting, Ogden, Utah. 13-15 March 2018.	March 2018	We conducted a roving creel survey from July to October 2017 to ascertain angler use, fish catch, catch rates, and angler opinions in the Logan River, Utah. We hope this work will better inform our understanding of angler success and perhaps help educate anglers and others of the value of this fishery.
Seidel, S.S., P.E. Budy, S. Bennett, and B. Roper. 2008. The spawning ecology and early life history of Bonneville cutthroat trout in northern Utah. Utah American Fisheries Society, Moab, UT, Feburary 25, 2008.	February 2008
Schultz, R. J., and T. C. Edwards, Jr. Development and validation of predictive models of cavity nesting bird habitat in the Fishlake National Forest. Paper presented at the Joint Meeting of the 4th Annual Forest Inventory and Analysis Symposium and The Southern Mensurationists, New Orleans, Louisiana, 11/19/02.	November 2002
Schultz, R. J., Jr., T. C. Edwards, Jr., G. G. Moisen, and T. S. Frescino. Scale dependency in habitat selection by cavity nesting birds in Fishlake National Forest, Utah. Poster presented at the 2002 Annual Meeting of the Ecological Society of America, Tucson, Arizona, 8/5/02.	August 2002
Saunders, W.C., P. Budy, and G. Thiede. 2011. Using Large-Scale Population Manipulation to Understand Source-Sink Dynamics of Invasive Brown Trout. Oral presentation, American Fisheries Society Annual Meeting, September 5-8, 2011. Seattle, WA.	September 2011
Saunders, W.C., P. Budy, P. Burnett, and P. Holden. 2011. Can a University, the UDWR, the US Forest Service, and a Trout Unlimited Chapter Really Accomplish Anything? Biological Restoration of the Right Hand Fork of the Logan River, an Experiment. Invited Oral Presentation, American Fisheries Society, Utah Chapter, March 22-23, 2011. Salt Lake City, UT.	March 2011
Santos, M. J., J. M. Matos, J. A. Bissonette, and M. Santos-Reis. 2006. Riparian areas in the fragmented landscape of southern Portugal: Applications for conservation Planning. Presented at the 1st European Congress of Conservation Biology, 22-26 August, Eger, Hungary.	August 2006
Sandbach, C., Budy, P., Young, J. K. 2023. Evaluating the Influence of Beaver Dam Analogs on Beaver Translocation for Low-Tech, Process-Based Desert River Restoration. In: The Colorado and Utah Chapters of The Wildlife Society Annual Meeting.; 2023 Mar 8-10.; Grand Junction, CO.	March 2023	Stream restoration programs in the western US are increasingly employing beaver-related restoration techniques, which include beaver translocations or installation of beaver dam analogs (BDAs) to degraded stream reaches. The goal of our study was to investigate whether installation of BDAs improved the probability of translocated beavers surviving and colonizing a section of a degraded and simplified desert river in east-central Utah.
Rosa, S., and J. A. Bissonette. 2007. Roads and desert small mammal communities: Positive interactions? ICOET meeting, Little Rock, AR, 20-25 May 2007.	May 2007
Rosa, S., and J. A. Bissonette. 2006. Preliminary Results of a Wildlife Mortality Mitigation Strategy on Interstate 15 in Utah. Presented at the Utah Chapter of the Wildlife Society, Moab Utah, 1-3 March 2006	March 2006
Rosa, S. and J. Bissonette. 2005. How to teach a mule deer to safely cross an interstate highway: Preliminary results of a wildlife mortality mitigation strategy on Interstate 15 in Utah, USA. Poster presented at the International Conference on Ecology and Transportation (ICOET), San Diego, 29 August-2 September 2005.	September 2005
Roholt, B, G.P. Thiede, and P. Budy. 2013. A morphometric determination of gape limit for seven fish predators in three western USA waters. Oral presentation at the Utah Chapter of the American Fisheries Society meeting, Wahweap, Utah-Arizona, 26 - 28 March 2013.	March 2013	This study examined gape size in predatory fishes in western waters. This can provide an indicator of the size range of prey being consumed by predatory fish, and thus provide a better understanding of the effectiveness of different piscivores to control aquatic systems.
Ripplinger, J., and T. C. Edwards, Jr. Quantifying legacy effects of past land-use on shrubsteppe environments. Offered paper, 2009 Meeting of the U.S. Chapter of the International Association for Landscape Ecology, Snowbird, Utah, 4/14/2009.	April 2009
Ripplinger, J., and T. C. Edwards, Jr. Land-use legacies: Quantifying vegetation dynamics for sustainable shrubsteppe management. Poster presented at the 94th Annual Meeting of the Ecological Society of America, Albuquerque, New Mexico, 8/7/09.	August 2009
Reynolds, J, P. Budy, G.P Thiede, and K. Chapman. 2015. Interactions between native and non-native species in the Strawberry Reservoir ecosystem: is there enough fish to go around? Annual Meeting of the Utah Chapter of the American Fisheries Society, Moab, Utah. 24 - 26 March, 2015. Poster presentation.	March 2015	This study assessed potential for net bias, estimated age-class structure and body condition of non-game fishes, and investigated the relative impact pelicans have on the different fish species of the reservoir.
Remiszewski, T., P. Budy, and W. Macfarlane. 2022. Examining the Impacts of Extreme Geomorphic Change on Habitat Persistence in a Historically Degraded Desert River. Western Division of the American Fisheries Society, 7–9 March 2022. Ogden, UT.	March 2022	MS thesis research examining the impacts of extreme geomorphic change in a historically degraded desert river. Researching the impacts of extreme geomorphic change on ecosystem persistence and fish habitat.
Remiszewski, T., P. Budy and W. Macfarlane. 2022. Extreme, Positive Geomorphic Change in a Historically Degraded Desert River: Implications for Imperiled Fishes. Joint Aquatic Sciences Meeting, 14–20 May 2022. Grand Rapids, MI.	May 2022	MS thesis research examining the impacts of extreme geomorphic change in a historically degraded desert river. Researching the impacts of extreme geomorphic change on ecosystem persistence and fish habitat.
Remiszewski, T., P. Budy and W. Macfarlane. 2021. The Response of Fish Habitat and Imperiled Fishes to Extreme Geomorphic Change in a Historically Degraded Desert River. National Meeting of the American Fisheries Society, 9 November 2021. Baltimore, MD.	November 2021	MS thesis research examining the impacts of extreme geomorphic change in a historically degraded desert river. Researching the impacts of extreme geomorphic change on ecosystem persistence and fish habitat.
Remiszewski, T. and P. Budy. 2021. THE RESPONSE OF FISH HABITAT AND IMPERILED FISHES TO EXTREME GEOMORPHIC CHANGE IN A HISTORICALLY DEGRADED DESERT RIVER. Utah State University Graduate Student Symposium, 10 April 2021, Logan, UT.	April 2021	The overall goal of this study is to document the altered geomorphology of this region as it relates to creation of fish habitat and investigate use of this feature by fishes relative to previously sampled and unaltered reference reaches. Direct evidence of significant changes in complexity, as well as the retention of endemic fishes in the habitat feature, could offer insight for future management and recovery of endangered desert fish species.
Remiszewski, T and P. Budy. 2021. THE RESPONSE OF IMPERILED FISHES TO EXTREME GEOMORPHIC CHANGE IN A HISTORICALLY DEGRADED DESERT RIVER. Western Division of the American Fisheries Society, 10-15 March 2021, Virtual via Zoom.	March 2021	The overall goal of this study is to document extreme geomorphic change in a historically degraded desert river tributary as it relates to the creation of fish habitat and use by fish species. Direct evidence of significant geomorphic change, as well as the retention of endemic fishes in the habitat feature, could offer insight into “low tech” restoration opportunities and recovery of endangered desert fish species.
Rasmussen, J., and E.F. Stuber. Restoration Effects on Mule Deer (Odocoileus hemonius) Space-use in Utah. 2023 UT Chapter of the Wildlife Society Annual Meeting. March 8-10 Grand Junction, CO	March 2023	Analysis of seasonal mule deer use of actively restored habitats across Utah
Rasmussen, J., E.F. Stuber, D. Summers, and K. Hersey. Mule deer (Odocoileus hemonius) space-use on Utah restored lands. July 2023. American Society of Mammalogists Annual Meeting. Anchorage AK, USA.	July 2023	Study quantifies how mule deer use areas that have undergone various active habitat restoration activities
Rasmussen, J., and E. Stuber. August 2023. "Effects of restoration on Mule deer space in Utah" Nevada Mule Deer Summit*. Winnemucka, NV, USA.	August 2023	Summarizing effects of active habitat restoration through the Utah Watershed Restoration Initiative on Mule deer space in Utah
Radeloff, V., W. Schroeder, and J. A. Bissonette. March 2000. GIS and remote sensing analysis for the Large Herbivore Initiative. Presented in Poland.	March 2000
R. Chaston, P. Budy, and G.P. Thiede. 2010. Distribution and habitat choice of brown trout (Salmo trutta) in Right Hand Fork, a tributary to the Logan River, Utah: monopolizing on a large-scale removal effort to better understand habitat limitations on brown trout invasion success. Poster. American Fisheries Society, Western Division, Salt Lake City, April 20-23, 2010.	April 2010
Puttfarcken, A.H., R. Norvell, and E. F. Stuber. Avian Resilience: Estimating Occupancy Patterns Across Gradients of Habitat Quality. 2023 UT Chapter of the Wildlife Society Annual Meeting. March 8-10 Grand Junction, CO	March 2023	Analysis of avian resilience to changes habitat quality across Utah
Puttfarcken, A.H., R. Norvell, and E. F. Stuber. 2022. Avian Resilience: Estimating Occupancy Patterns Across Gradients of Habitat Quality. Spokane, WA. 6-10 Nov. 2022	November 2022	Investigates avian population resilience to habitat degradation
Petrosky, C.E., H. A. Schaller, and P. Budy. 2001. Productivity and survival rate trends in the freshwater spawning and rearing stage of Snake River chinook salmon (Oncorhynchus tshawytscha). American Fisheries Society National Meeting, August 2001, Phoenix, Arizona.	August 2001
Pennock, CA, Bruckerhoff, LA, Gido, KB, Barkalow, AL, Breen, MJ, Budy, P, Macfarlane, WW, Propst, DL. 2022. Declines of common native fishes in two arid-land rivers despite managed environmental and natural flow regimes.	May 2022	Environmental flows are used to reduce downstream negative impacts of dams. Our results suggest declining watershed runoff and increased water use could reduce their effectiveness and threaten native fish in rivers with relatively natural flow regimes.
Pennock, C., Z. Ahrens, M. McKinstry, P.MacKinnon, P. Budy, and K. Gido. 2020. Emergence of barriers at river-reservoir inflows create a conservation conundrum for native fish management in the Colorado River Basin. National American Fisheries Society Conference, Columbus, Ohio. 30 August - 3 September 2020.	August 2020	A novel waterfall has formed on the San Juan River as the river cut new channels through deposited sediments. Although removal or construction of a fish passage around the PFW has been proposed, management of this barrier is complicated because it also hinders movement of non-native fishes, control of which is a major objective for recovery efforts in the San Juan River.
Pennock C, Macfarlane W, Budy P, Jimenez J, Goodell J. 2022. Effective conservation and restoration of desert riverscapes must include conservation of in-stream flows: What can we learn from a case study from the White River, Utah?	February 2022	The White River is the only tributary to the middle Green River with a natural flow regime and robust populations of native fishes. We developed a conservation, restoration, and monitoring plan for the lower White River to assist managers in maintaining habitat complexity and a functioning riverscape.
Pehrson, H., C. Pennock, G. P. Thiede, and P. Budy. 2021. Effects of thermokarst failure on fish feeding ecology and diet composition in a pair of arctic lakes. Annual Meeting, Western Division, American Fisheries Society, Virtual, 10-14 May.	May 2021	We modeled fish responses to thermokarst failure and compared diet composition between a thermokarst impacted and paired-reference lake. This study assesses impacts to fishes due to indirect effects of climate change, which will help managers understand long term sustainability of the fish populations.
P.D. MacKinnon, M. McKinstry, D. Speas, and P. Budy. 2013. Innovative Uses of Pit-tag Technology: Examples from the Colorado River Basin. Oral presentation at the Western Division American Fisheries Society Annual Meeting, Boise, Idaho, 15 – 18 April 2013.	April 2013	In this presentation various projects using innovative PIT-tag detection antenna designs are summarized. This will inform researchers and managers of new methods available for detecting PIT-tagged fish.
P. Budy, T. Walsworth, G.P. Thiede. P. Thompson, M. McKell, P. Holden, P. Chase, C. W. Saunders. 2021. Resilient and rapid recovery of native trout after removal of a non-native trout. Western Division of the American Fisheries Society Annual Meeting. May 10-14, 2021. Virtual Conference.	May 2021	These results demonstrate native trout species have substantial capacity to rapidly recover following removal of invasive species in otherwise minimally altered habitats. While tributaries such as like this study location are likely limited in extent individually, collectively they may serve such as source populations for larger connected systems.
Oman, T., G.P. Thiede, and P. Budy. 2024. Investigating invasiveness: diet and abundance of a native and nonnative predator in Pyramid Lake, Nevada. Joint Meeting: Spring Runoff and Northern Utah Water Users. Navigating Utah's Water Challenges Through Interdisciplinary Partnerships. Utah State University, Logan, Utah, March 27, 2024.	March 2024	The Lahontan Cutthroat Trout (Oncorhynchus clarkii henshawi, LCT), a Cutthroat Trout subspecies indigenous to the Lahontan basin, faces a significantly diminished contemporary distribution relative to historical conditions. A robust population persists in Pyramid Lake, Nevada. However, the introduction of Sacramento Perch (Archoplites interruptus, SAP) may limit the health of the LCT population in Pyramid Lake.
Olson, D. D., J. A. Bissonette, and M. R. Schwender. 2011. A smartphone application for tracking wildlife-vehicle collisions. Annual Meeting of the Wildlife Society, Hawaii. 1-5 November 2011.	November 2011
Nichols, K., W.C. Saunders, G.P. Thiede, and P. Budy. 2018. Evaluating diet overlap between cutthroat trout and brown trout in instream, experimental enclosures under differing densities: can native trout resist the impacts of nonnative trout when they occur at higher densities? Poster presentation at the Utah Chapter of the American Fisheries Society annual meeting, Ogden, Utah. 13-15 March 2018.	March 2018	Our goal was to determine whether trout diet varied by treatment density and whether diets of the two trout species overlapped significantly enough to infer competition or determine that cutthroat trout in the higher density treatments were able to “resist” competition by brown trout.
Newlon, C., P. Budy and H. Schaller. 2013. Understanding the Dynamics and Implications of Bull Trout Movement in the Walla Walla Basin.	April 2013	This study examines the environmental cues that influence the spatiotemporal movement patterns of bull trout, a threatened species. The results of this study will assist in understanding how river management can be used to promote range wide species recovery.
Newlon, C. and P. Budy. 2013. Understanding the Dynamics and Implications of Bull Trout Movement in the Walla Walla Basin.	September 2013	This study examines the environmental cues that influence the spatiotemporal movement patterns of bull trout, a threatened species. The results of this study will assist in understanding how river management can be used to promote range wide species recovery.
N. Clancy, D. Isaak, B. Maitland, P. Budy, and A. Walters. 2023. Thermal refuges for climate vulnerable fishes in Wyoming. Colorado-Wyoming Chapter of the American Fisheries Society Annual Meeting 2023.	March 2023	Stream warming is greatly affecting a large number of fishes, but most studies have focused on economically-valuable, cold-water species. While many warmwater fishes are expected to fare better in response to stream warming, increasing in abundance and distribution, that does not preclude other members of the guild from declining when stream temperatures exceed their thermal tolerances.
Murphy, B., P. Belmont, P. Budy, J. A. Czuba and T. E. Walsworth. 2019. Post-wildfire sediment dynamics and fish population response to habitat disturbance. Invited oral presentation: Joint Annual Conference of the American Fisheries Society & The Wildlife Society, Reno, Nevada, 29 September – 03 October 2019.	September 2019	Presents a new geomorphic model capable of predicting watershed scale sediment dynamics in response to disturbance (e.g., wildfire), coupled to a novel stream network metapopulation model with mechanistic habitat impacts to population vital rates and movement. Together these models can be used to predict how stream fish populations may respond to changing disturbance regimes.
Murphy BP, Walsworth TE, Budy P, and Belmont P. 2019. Exploring the impacts of spatially variable disturbance and fragmentation on Bonneville cutthroat trout using a novel metapopulation model. Oral presentation: Advances in the Population Ecology of Stream Salmonids Symposium. Granada, Spain. May 20-24, 2019.	May 2019	Presents a novel stream network metapopulation model, capable of exploring spatially and temporally dynamic disturbance impacts on sub-population dynamics. The model provides managers with a valuable tool for exploring the impacts of potential future disturbances on stream fish populations of conservation or management concern.
Morán, L.S., B. Poulter, P. Balvanera, F. Kienast, and T.C. Edwards, Jr. Modelling the vulnerability of ecosystem service hotspots in Mexico to climate change. Offered paper, 2012 Meeting of the U.S. Chapter of the International Association for Landscape Ecology, Newport, Rhode Island, 4/9/2012	April 2012
Moisen, G.G., E.A. Freeman, J.A. Blackard, T.S. Frescino, N.E. Zimmerman, T.C. Edwards, Jr. Predicting tree species presence and basal area in Utah: a comparison of stochastic gradient boosting, generalized additive models, and tree-based methods. Paper presented at the Seventh Annual Forest Inventory and Analysis Symposium, Portland, Maine.	October 2005
Mohn, H., P. Budy, B. Roper. 2014. An evaluation of movement characteristics and spatial population structure: Informing sustainable management. Wild Trout Symposium. West Yellowstone, Montana. September 22-25, 2014.	September 2015	Performing a critical evaluation of movement characteristics and spatial population structure so relevant management recommendations can be made for sustainability.
Mohn, H., B. Roper, P. Budy. 2014. Investigating Bonneville Cutthroat Trout spawning movement within the Logan River watershed with consideration to potential metapopulation structure and management. American Fisheries Society, Western Division, 7-11 April, 2014, Mazatlán, Mexico.	April 2014	Provide recommendations for the management of the Bonneville Cutthroat Trout spawning movement in the Logan River watershed.
Mohn, H., B. Roper, P. Budy. 2014. Quantifying Bonneville Cutthroat Trout spawning movement within the Logan River watershed with consideration to potential metapopulation structure and management. American Fisheries Society, Utah Chapter, 11-14 March, 2014, Price, Utah, USA.	March 2014	The study helps in the understanding of the Bonneville Cutthroat trout spawning movement in the Logan River watershed which may help with management decisions.
Miller, S.W., P.E. Budy, and J. C. Schmidt. 2008. Testing the field of dreams hypothesis: Applications of meta-analysis to river restoration. North American Benthological Society, Salt Lake City, Utah, May 25, 2008.	May 2008
Miller, B. J., C. A. Pennock, and P. Budy. 2023. Wood you Believe it? Non-Native Wood Addition Enhances In-Stream Habitat for Native Desert Fishes. 2023 Annual Meeting, Western Division American Fisheries Society, Boise ID, 08 May - 11 May 2023.	May 2023	Habitat enhancement for imperiled native fishes. Non-flow alternative to force hydraulic and geomorphic diversity in an altered desert riverscape.
Miller, B. J., C. A. Pennock, and P. Budy. 2023. Wood You Believe it? Non-Native Wood Addition Enhances In-Stream Habitat for Native Desert Fishes. 2023 Annual Meeting, Colorado River Aquatic Biologists, Laughlin NV, 4-5 Jan 2023.	January 2023	Note: no abstract was required for CRAB.<br><br>Habitat enhancement for native fishes using abundant native vegetation on the San Juan River.
Miller, B. J., C. A. Pennock, and P. Budy. 2022. Wood You Believe it? Experimental Nonnative Wood Addition Enhances In-Stream Habitat for Native Desert Fishes. 2022 Annual Meeting, Desert Fishes Council, Saint George UT, 16-20 Nov 2022.	November 2022	This study investigates the efficacy of using non-native wood addition to enhance in-stream habitat for native desert fishes.
Miller, B. J., C. A. Pennock, and P. Budy. 2022. Testing the Efficacy of Non-Native Wood Addition to Enhance In-Stream Habitat for Native Desert Fishes. 2022 Annual Meeting, Utah American Fisheries Society, Ogden UT, 7-9 March 2022.	March 2022	This study investigates the efficacy of using non-native wood addition to enhance in-stream habitat for native desert fishes.
Meredith, C.S., P. Budy, and J. Schmidt. 2010. The influence of geomorphic-hydrologic factors on invasion potential of brown trout (Salmo trutta) in a mountain stream. ‘Brown Trout in the West’ Special Symposium, Budy, Co-Chair, American Fisheries Society, Western Division, Salt Lake City, April 20, 2010.	April 2010
Meredith, C., P. Budy, and M. Hooten. 2012. Effects of a changing physical template on the distribution of brown trout in a mountain stream. Utah Chapter, American Fisheries Society, Annual Meeting, March 26-29, 2012, Bullfrog, UT.	March 2012
McLaren, J.S.; Van Kirk, R.; Brothers, S; Budy, P., Muradian, M. 2021. Just add water: how water supply to one reservoir controls water quality and fish habitat throughout the Henry’s Fork basin in Idaho. North American Lakes Management Society Annual Meeting, Oklahoma City, OK, 15-18 November 2021	November 2021	Presentation outlining the importance of demand-side water management and conservation for the purposes of fisheries conservation and enhancement given increased drought and demands on water resources. Presentation will be given to a national society dedicated to effective and efficient reservoir management for beneficial uses, thereby allowing access to a receptive audience of researchers, practitioners, mangers, and agencies responsible for reservoir management.
McLaren, J.S.; S. Brothers; and P. Budy. 2019. Reservoirs as magnifiers of climate change: effect of climate-driven water management on Kokanee salmon (Oncorhynchus nerka) habitat and migrations in Idaho’s Island Park Reservoir. Spring Runoff Conference, Logan, Utah, March 26. Poster presentation.	March 2019	Reporting on fieldwork in 2018 in combination with some modeling done in 2019 to paint a picture of potential limiters on a managed kokanee salmon fishery in east Idaho.
McLaren, J.S., R. Van Kirk, S. Brothers, P. Budy. 2022. Reservoir Drawdown vs. Kokanee in the Henrys Fork. Idaho Chapter of the American Fisheries Society Annual Meeting, Fort Hall, Idaho, March 1-4. Oral Presentation.	March 2022	Reporting on a study examining the relationship between populations of a popular sportfish, kokanee salmon, and reservoir drawdown resulting from climate change.
McLaren, J.S., R. Van Kirk, S. Brothers, P. Budy. 2022. A Living Substrate: the scale-dependent role of submerged macrophytes on trout habitat. Joint Aquatic Sciences Meeting, Grand Rapids, Michigan, May 14-20. Oral Presentation.	May 2022	Submerged macrophyte communities are prevalent in low-gradient rivers around the world and are known to provide important ecological and hydrological functions, but the net effect on trout habitat provision remains poorly understood. Our study improves understanding of the complex relationship between submerged macrophytes and trout habitat, revealing potential management actions to improve trout productivity.
McLaren, J., P. Budy, S. Brothers, and R. Van Kirk. 2021. Fish like plants (but maybe not) and other stories from the Henry's Fork. Western Division AFS Annual Meeting, May 2021. Utah, virtual. May 12, 2021	May 2021	This presentation describes an investigation into how submerged plants create and maintain unique fish habitats in the Henry's Fork River in Idaho. The work has implications for better understanding how submerged plants create fish habitat and how fish interact with submerged plants, which is important given the increase in plant growth brought about by nutrient pollution and flow control.
McLaren, J. S., P. E. Budy, S. Brothers, R. W. Van Kirk. 2022. The role of fish habitat in modulating the disconnect between fisheries and fishing. Wild Trout Symposium XIII, West Yellowstone, Montana, September 27-30. Oral Presentation.	September 2022	Improving fisheries metrics does not always lead to better fishing, and vice versa. Here, the authors present data showing how habitat modulates the connection between fisheries metrics and fishing.
McLaren, J. S., P. E. Budy, S. Brothers, R. W. Van Kirk. 2022. An Osprey’s view: aerial imagery reveals how submerged macrophytes create trout habitat. American Fisheries Society, Spokane, Washington, August 21-25. Oral Presentation.	August 2022	Restoration and management of stream ecosystems oftentimes focuses on improving fish habitat and carrying capacity. To successfully accomplish these goals, managers must understand whether or not habitat changes lead to a concomitant change in carrying capacity--our paper examines this issue in a unique context in the Henrys Fork River in Idaho.
McLaren, J. P. Budy, S. Brothers, and R. Van Kirk. Physical structure or nutrient enrichment? Novel insights on food web controls from a macrophyte-dominated river system. Spring Runoff Conference, March 2020, Logan, UT.	March 2020	Reports on my project's beginnings of understanding the drivers of fish habitat and growth in the Henry's Fork, which is important given changes in nutrient loading from population growth in the western US.
McLaren, J. P. Budy, S. Brothers, and R. Van Kirk. Physical structure or nutrient enrichment? Novel insights on food web controls from a macrophyte-dominated river system. Ecological Society of America, August 2020, Salt Lake City, UT.	August 2020	Reports on the drivers of food webs and stream ecosystems in response to physical changes and aquatic plant growth. Important because plant growth and the physical nature of streams is liable to change with population increase in the western US.
McLaren, J. P. Budy, S. Brothers, and R. Van Kirk. Macrophytes and nutrients in a stream system: Utilizing and evaluating the Qual2K model in the Henry’s Fork of the Snake River. Society for Freshwater Science, Salt Lake City, Utah, May. Oral Presentation.	May 2019	Presented research on nutrient concentration anomalies in the Henry's Fork. Nutrient concentration anomalies may provide important information on how river productivity will affect fish and fish habitat.
McLaren J.S., Mabaka A.J., Van Kirk R., Brothers S., Budy P. 2021. Beyond the 100^th Meridian: a case study of the complex mechanisms by which drought-induced drawdown affect salmonid habitat and populations in a western U.S. irrigation storage reservoir. American Fisheries Society annual meeting, Baltimore, MD. Symposium: Back to the Future of Reservoir Science and Management: What have we learned in 50 years? November 6-10, 2021.	November 2021	This study outlines the indirect mechanisms by which drought-induced reservoir drawdown affects salmonid bioenergetics, habitat, and populations.
McKay, S., P. Budy, and G.P. Thiede. 2012. Weber River metapopulation and source-sink dynamics of native and endemic fishes. Utah Chapter, American Fisheries Society, Annual Meeting, March 26-29, 2012, Bullfrog, UT.	March 2012
McHugh, P., and P. Budy. A model-based assessment of the potential response of selected Snake River chinook salmon populations to habitat improvements. Pittsburgh, Pennsylvania.	June 2002
McHugh, P., and P. Budy. A model-based approach to assessing the potential response of selected Snake River spring/summer chinook salmon populations to spawning and rearing habitat improvements. Phoenix, Arizona.	August 2001
McHugh, P., and P. Budy. 2002. A model-based assessment of the potential response of selected salmon populations to habitat improvements.	May 2002
McHugh, P., P. Budy, and H. A. Schaller. 2002. An assessment of Snake River spring/summer chinook salmon spawning habitat suitability using logistic regression techniques. Bonneville Chapter of the American Fisheries Society, Pocatello, Idaho.	February 2002
McHugh, P., Budy, P., Thiede, G., and de la Hoz, E. 2003. Evaluating the demographic effects of disease on Bonneville cutthroat trout in the Logan River, Utah: a PVA approach. American Fisheries Society, Quebec, CAN.	August 2003
McHugh, P. and P. Budy. 2005. An experimental assessment of the multi-scale effects of exotic brown trout on native Bonneville cutthroat trout. Bonneville Chapter of American Fisheries Society, Garden City, UT.	March 2005
McHugh, P. and P. Budy. 2005. An experimental assessment of the multi-scale effects of exotic brown trout on native Bonneville cutthroat trout. American Fisheries Society, National Meeting, Anchorage, AK.	September 2005
McHugh, P. and P. Budy. 2004. An experimental evaluation of altitudinal species-zonation patterns in montane streams: do abiotic or biotic factors determine the distribution of native and nonnative trout in Utah, USA, rivers? VI International Congress on the Biology of Fish. Manaus, Brazil. 2 August 2004. Award: Best Oral Presentation in the Fish Communities and Fisheries Symposium at the VI International Congress on the Biology of Fish.	July 2004
McHugh, P. and P. Budy. 2002. An assessment of chinook salmon spawning habitat suitability using logistic regression techniques.	May 2002
McHugh, P and P. Budy. 2004. An experimental evaluation of altitudinal species-zonation patterns in montane streams: do abiotic or biotic factors determine the distribution of native and nonnative trout in Utah, USA, rivers? Utah State University Spring 2004 Runoff Conference, Logan, UT. Poster. 26 March 2004.	March 2004
Maloney, B., P. Budy, and J. Gaeta. 2017. Evaluating optimal rearing habitat for the Bluehead Sucker (Catostomus discobolus). Oral Presentation, Joint Meeting of the Colorado-Wyoming and Utah Chapters of the American Fisheries Society 2017, Grand Junction, Colorado, USA.	February 2017	Presentation on the second year of a Master's study.
Maloney, B., P. Budy, and J. Gaeta. 2017. Do spawning and rearing habitat contribute to the recruitment bottleneck of imperiled Bluehead Sucker (Catostomus discobolus)? Oral Presentation, Annual Meeting of the Western Division of the American Fisheries Society 2017, Missoula, Montana, USA.	May 2017	Summary of a Master's study (defended in April 2017).
Maloney, B., P. Budy, and J. Gaeta. 2016. Evaluating habitat-based niche requirements for the bluehead sucker (Catostomus discobolus): can we identify the cause of recruitment bottleneck? Oral Presentation, Utah Chapter American Fisheries Society Annual Meeting, Altamont, Utah, USA.	March 2016	Presentation on the first year of a Master's study.
Malmborg, N. G.P. Thiede, and P. Budy. 2015. Comparing two methods for sampling and estimating abundance of mottled sculpin in the Logan River, Utah. Annual Meeting of the Utah Chapter of the American Fisheries Society, Moab, Utah, 24 - 26 March 2015. Poster presentation.	March 2015	This study compare and contrast abundance and demographics of mottled sculpin between the sampling methods. Pairing results between the two methods may be the most accurate means to quantify demographics and abundance of mottled sculpin the Logan River.
Machado, N.J., T.C Edwards, Jr., J. Gibson, and M.S. Biudes. Assessing the efficiency of a protected area system in a Neotropical region using species distribution modeling. Invited paper, 9th International Association of Landscape Ecology World Congress, Portland, OR, 7/7/15.	July 2015	The objective of this study was to evaluate whether the protected areas in Mato Grosso state, Brazil are properly located to protect amphibians, birds and mammals. Species distribution predictions were generated for each group using occurrence data and environmental variables.
Macfarlane, W. W., P. Budy, G. P. Thiede, and B. G. Laub. Looking beyond the mainstem for the conservation and restoration of endangered Colorado River fishes. Western Division American Fisheries Society, Mazatlan, Mexico, 7-11 April 2014.	April 2014	The work investigates the potential importance of tributaries in conservation of endangered fish of the Colorado River. By identifying criteria for assessing the habitat potential of tributaries, this work will contribute towards management of these endemic native fishes.
Lyles, C.E., P. Budy, C.B. Yackulic and C.A. Pennock. 2024. Characterizing river metabolism and resource availability across a gradient of alteration in desert rivers to inform native fish management. 72nd Annual Meeting, Society for Freshwater Science, Philadelphia PA, 2 - 6 June 2024.	June 2024	This study examines the effects of water abstraction on ecosystem productivity in tributaries of the upper Colorado River Basin. The results will improve our understanding of linkages between river alteration, metabolic regimes, and trophic dynamics, enhancing our ability to understand how riverine ecosystem structure and function might change in the future.
Lucas, H., B. Maloney, G. Thiede, P. Tuttle, and P. Budy. 2016. Ageing and growth of bluehead sucker in the Weber River, Utah. Oral Presentation. Utah Chapter American Fisheries Society, Altamont, Utah, USA.	March 2016	Research from an undergraduate research technician in the Fish Ecology Lab at Utah State University.
Laub,B.G., D. Blythe, P. Budy, and J.C. Schmidt. 2019. Controls on native fish diversity in the Big Bend and Forgotten Reach of the Rio Grande and implications for management. Desert Fishes Council Meeting, Alpine, Texas, 20-24 November 2019.	November 2019	Comparison of the models between the two reaches revealed that width variation is a major factor driving native fish richness in Big Bend, where channel-widening floods occur, and where water quality is less impaired. In the Forgotten Reach, where channel-widening floods do not occur, small flow spikes and water quality are equally as important as habitat changes for native richness. Though additional research is needed, results suggest flow management to maintain channel width in the Big Bend
Laub, B.G., W. W. Macfarlane, G. P. Thiede, and P. Budy. 2015. Looking beyond the mainstem for conservation and restoration of endangered and sensitive Colorado River fishes. 145th Annual Meeting, American Fisheries Society, Portland, Oregon, 16-20 August 2015.	August 2015	Relationships between native fish species richness and discharge of tributary rivers in the Upper Colorado River Basin are presented. The work shows the importance of tributaries to conservation of native fish in the Upper Colorado River Basin.
Laub, B.G., P. Budy, J.Jimenez. 2013. Restoration of the San Rafael River and riparian corridor in southern Utah. Society of Wetland Scientists Annual Meeting, June 2-6, 2013, Duluth, Minnesota.	June 2013	In this presentation, research on native fish populations and geomorphic channel change in the San Rafael River is synthesized and used to develop restoration options. This will help guide restoration of the San Rafael River into the future.
Laub, B.G., J. Jimenez, and P. Budy. 2015. An experimental habitat enhancement effort for desert rivers: San Rafael River restoration project. Upper Colorado River Basin Water Forum, Grand Junction, Colorado, 28-29 October 2015.	October 2015	The results of a fish habitat restoration project on the San Rafael River in Utah will be presented. By sharing the results of the project, we will provide lessons learned and guidance to other managers and researchers attempting fish habitat restoration in desert environments.
Laub, B.G. and P. Budy. 2014. All as one or one for all? Assessing the likely effectiveness of multi-species management. 2014 Western Division Meeting, American Fisheries Society, Mazatlan, Mexico, 7-11 April 2014.	April 2014	In this presentation, research on the ecological similarity of three native fish will be presented. The work will help inform management of these three species in terms of whether individual species plans should be developed or whether they can be managed as an ecological complex.
Laub, B.G. and P. Budy. 2014. All as one or one for all? Assessing the likely effectiveness of managing three native species (bluehead sucker, flannelmouth sucker, and roundtail chub) as an ecological complex. Annual Meeting, Utah Chapter American Fisheries Society, Price UT, 11-13 March 2014.	March 2014	In this presentation, research on the ecological similarity of three native fish will be presented. The work will help inform management of these three species in terms of whether individual species plans should be developed or whether they can be managed as an ecological complex.
Laub, B., P. Budy, and J. Jiminez. 2013. Synthesizing population dynamics of native fish species and geomorphic analyses of channel change to guide restoration planning on the San Rafael River, Utah. Oral presentation at Utah Chapter of American Fisheries Society meeting, Wahweap Marina, UT-AZ, 26 - 28 March 2013.	March 2013	In this presentation, research on native fish populations and geomorphic channel change in the San Rafael River is synthesized to understand how physical habitat has changed over time and how native fish populations have responded. This synthesis will help guide restoration planning on the San Rafael River.
Laub, B., J. Jimenez, and P. Budy. 2014. Lower San Rafael River restoration. Utah Statewide Three Species Meeting, Salt Lake City, UT 12 November 2014.	November 2014	The work highlights efforts underway to restore the lower San Rafael River. Providing a summary of this work will help guide other restoration efforts on nearby rivers.
Laub, B. G., J. Jimenez, and P. Budy. 2016. An experimental habitat enhancement effort for desert rivers: San Rafael River restoration project. Tamarisk Coalition Annual Meeting, Grand Junction, Colorado, 9-11 February 2016.	February 2016	The presentation will summarize results of a river restoration project initiated in spring 2015. Summary of the outcomes and lessons learned will assist other river managers in developing river restoration projects in desert river systems.
Laub, B. G., J. Jimenez, and P. Budy. 2016. An experimental habitat enhancement effort for Utah's desert rivers: San Rafael River restoration project. Utah Chapter, American Fisheries Society, Annual Meeting. 15-17 March 2016.	March 2016	We will present the outcomes of a habitat restoration project implemented in spring 2015. Lessons learned from the restoration will help guide restoration efforts on similar rivers in the region.
Laub, B. G., J. Jimenez, and P. Budy. 2015. An experimental habitat enhancement effort for Utah's desert rivers: San Rfael River restoration project update. Utah AFS Meeting, Moab UT, 24-26 March 2015.	March 2015	We describe the design and implementation of a science based restoration plan for a desert river in Utah. Description of the project will help guide future river restoration efforts in the region.
Laub, B. G., J. Jimenez, and P. Budy. 2014. Restoration and monitoring plan for native fish and riparian vegetation on the San Rafael River, Utah. Tamarisk Coalition Research and Management Conference, 18-20 February, 2014, Grand Junction, Colorado, USA.	February 2014	This study provides management suggestions for the restoration and monitoring of native fish and riparian vegetation on the San Rafael River.
Laub, B. G., J. Jimenez, and P. Budy. 2014. Restoration and monitoring plan for native fish and riparian vegetation on the San Rafael River, Utah. 2014 Spring Runoff Conference, 1-2 April, 2014, Logan, Utah, USA.	April 2014	This work is important because it provides data which can help in the management and restoration of native fish and riparian vegetation on the San Rafael River.
Laub, B. G., J. Jimenez, P. Budy, and S. Lyster. 2016. An experimental habitat enhancement effort for a sandy river: San Rafael River restoration. 15th Annual River Restoration Symposium, Stevenson, Washington, 2-14 February 2016.	February 2016	Results of an experimental habitat restoration effort on the San Rafael River, a desert river in southeastern Utah, will be presented, focusing on changes to fish habitat and channel morphology. The presentation should inform other restoration projects by presenting lessons learned from this experimental project.
Laub, B. G., D. Blythe, and P. Budy. 2017. Understanding Multiple Impacts of Hydrologic Alteration on Native Fish Communities in the Rio Grande, Texas and Mexico. American Fisheries Society, Western Division, Annual Meeting, Missoula, Montana, 22-25 May 2017.	May 2017	The relative effects of multiple interacting factors driving native fish communities are explored in two reaches of the Rio Grande that differ in hydrologic alteration. The work identifies major limiting factors for native fish that can be addressed through management.
Laub, B. G. and P. Budy. 2016. Every last drop: Putting limited data to use in understanding multiple impacts of hydrologic alteration on native fish communities in the Big Bend reach of the Rio Grande. Desert Fishes Council Annual Meeting, Albuquerque, New Mexico, November 15-19, 2016.	November 2016	In this presentation, we summarize the multiple factors impacting fish communities in the Big Bend reach of the Rio Grande. The work helps understand how native fish are responding to multiple interacting threats and how management might address those threats.
Laplanche, C., G.P. Thiede, and P. Budy. 2017. Forecasting with a mechanistic model the invasion and the management of Brown Trout in the Logan River, Utah. Oral presentation at the Western Division of the American Fisheries Society meeting in Missoula, Montana, 22 - 26 May 2017.	May 2017	Brown trout are one of the most successful invasive species of fish. Forecasting their invasion provides clues for management of this exotic species.
Laplanche, C., G.P. Thiede, and P. Budy. 2017. Modelling the invasion and management of brown trout in the Logan River, Utah. Annual Meeting of the Western Division of the American Fisheries Society, 24 May, 2017, Missoula, MT.	May 2017	Modelling the invasion and management of brown trout in the Logan River, Utah to determine method of success.
Landom, K., T.A.Crowl, and P. Budy. 2010. Introduced sport fish and fish conservation in a novel food web: evidence of predatory impact. Invited Presentation ‘Sucker Summit’ Special Symposium, American Fisheries Society, Western Division, Salt Lake City, April 20-23, 2010.	April 2010
Konrad Hafen, W. Carl Saunders, Gary P. Thiede, and Phaedra Budy. 2013. Effects of impoundments on brown trout source-sink dynamics in the Logan River, Utah: Conservation implications for endemic Bonneville cutthroat trout. Western Division American Fisheries Society Meeting - Boise, Idaho, 15 - 18 April 2013.	April 2013	This study examined possible sources populations of brown trout in the Logan River that could serve as "hot spots" for invasion. It will help managers determine priority areas to prevent further brown trout advancement into endemic Bonneville cutthroat trout strongholds.
Klobucar, S.L., and P. Budy. 2018. The Chronicles of Charnia: evaluating the abiotic and biotic factors that structure arctic lake food webs with consideration of Arctic Char (Salvelinus alpinius) populations. Oral presentation. Western Division of the American Fisheries Society Annual Meeting. May 21-25, 2018.	May 2018	Our findings add to our knowledge of char populations in arctic Alaska. These findings will be important to consider for subsistence and conservation decisions, especially as our other work suggests lake-specific carrying capacity, but also population cycles and stochastic vulnerability, will likely increase in a warmer climate.
Klobucar, S.L., and P. Budy. 2016. Consequences of seasonal variation in reservoir water level for predatory fishes: linking visual foraging and prey densities. Oral Presentation. Annual Summer Meeting of the Association for the Sciences of Limnology and Oceanography, Santa Fe, NM, June 5-10, 2016.	June 2016	We describe how fluctuations in water levels affect the fishes within reservoirs, which is important in the context of water quality and quantity, especially across the arid western United States.
Klobucar, S.L., W.C. Saunders, C. Luecke, and P. Budy. 2013. A Lota lota consumption: trophic effects and potential impacts of a novel and voracious predator in Flaming Gorge Reservoir, WY-UT. Annual Meeting of the Western Division of the American Fisheries Society, Boise, ID, April 15-18, 2013.	April 2013	We examined the ongoing effects of burbot on the food web in Flaming Gorge Reservoir and compared current impacts to those of a previous study from the early stages of burbot invasion in the reservoir. Our findings will help managers understand the effects of burbot on sport fish populations and guide management (e.g., burbot control) decisions moving forward.
Klobucar, S.L., W.C. Saunders, C. Luecke, and P. Budy. 2013. A Lota lota consumption: trophic effects and potential impacts of a novel and voracious predator in Flaming Gorge Reservoir, WY-UT. Annual Meeting of the Utah Chapter of the American Fisheries Society, Page, AZ, March 26-29, 2013.	March 2013	We examined the ongoing effects of burbot on the food web in Flaming Gorge Reservoir and compared current impacts to those of a previous study from the early stages of burbot invasion in the reservoir. Our findings will help managers understand the effects of burbot on sport fish populations and guide management (e.g., burbot control) decisions moving forward.
Klobucar, S.L., T.W. Rodgers, and P. Budy. 2017. At the forefront: evidence of the applicability of using environmental DNA to quantify the abundance of fish populations in natural lentic waters with additional sampling considerations. Poster presentation. Utah and Colorado-Wyoming Chapters Joint Annual Meeting of the American Fisheries Society. Grand Junction, CO, February 21 - 23, 2017.	February 2017	Overall, our findings demonstrate that eDNA techniques can produce effective estimates of relative fish abundance in natural lakes. These findings can guide future studies to improve upon and expand upon eDNA sampling regimes in effort to guide research and management with an innovative technique that is rapid, relatively inexpensive, and non-intrusive.
Klobucar, S.L., P. Budy, and G.P. Thiede. 2011. Out of place predators: using bioenergetic efficiency to explain predator performance across an array of small impoundments in northeast Utah. Oral presentation, American Fisheries Society Annual Meeting, September 5-8, 2011. Seattle, WA.	September 2011
Klobucar, S.L., L. Simmons, G.P. Thiede, and P. Budy. 2015. Simplified complexity or complex simplification: what structures lentic fish communities on the North Slope, Alaska? Invited presentation. Annual meeting of the Alaska Chapter of the American Fisheries Society, Homer, AK, 4-6 November 2015.	November 2015	In this work we describe fish community structure on the North Slope of Alaska, and how variation in these structures affects populations. In the context of climate change, we might expect new and novel community structures.
Klobucar, S.L., J.W. Gaeta and P. Budy. 2016. A changing menu in a changing climate? Predicting the availability of fish food in warmer arctic lakes. Oral presentation. Annual Meeting of the Western Division of the American Fisheries Society, Reno, NV, 19-24 March, 2016	March 2016	This work demonstrates the availability of fish food in a warmer climate in arctic Alaska. While we readily predict what happens to fish based on temperature, less is known about their food resources, and this work fills that gap and improves our predictions.
Klobucar, S.L., J.W. Gaeta and P. Budy. 2015. A changing menu in a changing climate? Predicting the availability of fish food in warmer arctic lakes. Oral presentation. 145th Annual Meeting of the American Fisheries Society, Portland, OR, August 16-20, 2015.	August 2015	This work investigates the availability of zooplankton as fish food in arctic lakes, with special regard to a changing climate. The availability of fish food will directly impact fish populations and their management.
Klobucar, S.L. and P. Budy. 2015. Consequences of seasonal variation in reservoir water level for predatory fishes: linking visual foraging and prey densities. Annual Meeting, Utah Chapter of the American Fisheries Society, Moab, UT, March 24-25, 2015.	March 2015	We measured the effects of reservoir fluctuation on predatory fish consumption in a small western reservoir, and applied these results to bioenergetic and visual foraging models. This approach extends to the management of fisheries in variable, water limited reservoirs.
Klobucar, S.L. and P. Budy. 2013. In hot(ter) water? predictions of arctic char growth and consumption under climate change scenarios on the Alaska North Slope. Annual meeting, Western Division American Fisheries Society, Mazatlan, MX, April 7-11, 2014.	April 2014	We modeled changes in fish growth for lakes on the North Slope of Alaska under climate warming scenarios. Our findings will be tested in the coming years via a whole-lake experimental manipulation.
Klobucar, S., P. Budy, and G.P. Thiede. 2012. Examining the potential of forage enhancement in trophically limited reservoirs: results from a large-scale experiment. American Fisheries Society, National Meetings, August 19-23, 2012, Minneapolis, MN.	August 2012
Klobucar, S., P. Budy, and G.P. Thiede. 2012. Can we improve predator performance in trophically limited reservoirs: Results from a large-scale experiment. Utah Chapter, American Fisheries Society, Annual Meeting, March 26-29, 2012, Bullfrog, UT.	March 2012
Kleinhesselink, A., A. Compagnoni, J.B. Koch, L. Long, T.C. Edwards, Jr., and P.B. Adler. Who will manage sagebrush habitats in a future of rapid climate change? Invited paper, 68th Annual Meeting of the Society for Range Management, Sacramento, CA 31/01/2015.	January 2015	Species distribution models (SDM) predict that areas with climate suitable for sagebrush ecosystems will shift northwards and shrink in size over the next century due to global warming. Our analysis agrees with dramatic loss of total area suitable for sagebrush predicted by previous SDMs, but we show that these losses will not occur evenly over land management agencies.
Kilmer J., N. Barrett, G.P. Thiede, T. Arnold, and P. Budy. 2019. Estimating the abundance of slimy sculpin in an arctic lake using catch data and mark-recapture methods. Poster presentation: Annual Meeting of the Utah Chapter of the American Fisheries Society, Provo, Utah, 12 – 14 March 2019.	March 2019	As sculpin represent an important prey and predator resource, altering their density could cause significant changes to the food web and trophic dynamics in this relatively delicate arctic ecosystem. The collection of baseline and long-term data is critical to understanding large-scale environmental change.
Kienast, F., and T. C. Edwards. An e-learning (MOOC) that will survive Covid-19. Offered paper, International Association for Landscape Ecology, North American Chapter, Virtual Online Annual Meeting, 4/13/2021.	April 2021	The paper describes course performance with summary metrics, illustrates contents and didactic tools, and provides a list of suggestions for instructors who engage in distant learning. To encourage teachers to engage in more e-learning we identify the following five key success factors for this and related MOOCs: (1) commitment and passion of an international consortium of lecturers; (2) a sound mixture of theory and practice; (3) numerous field-videos; (4) content and skill-oriented practicums
Kienast, F., T.C. Edwards, Jr., M. Potschin, and R. Haines-Young. Generating large-scale maps featuring the capacity of landscapes to deliver ecosystem goods and services. Invited paper, 2011 Meeting of the U.S. Chapter of the International Association for Landscape Ecology, Portland, Oregon, 4/4/2011.	April 2011
Kienast, F., T.C. Edwards, Jr., K.B. Jones, and L.S. Morán. Mapping landscape functions at large scales: Europe, United States, and Mexico. Invited paper, The 8th International Association for Landscape Ecology, Beijing, China, 8/19/2011.	August 2011
Kassar, C., and J. A. Bissonette. 2005. Identifying and describing road mortality hotspots: When is it necessary to be spatially explicit? US-IALE, Syracuse N.Y. 2005 meeting, 14 March.	March 2005
Jesmer, B., E.F. Stuber, B. Carlson, R. Larsen, and B. McMillan. Incidence and implications of consistent individual differences in spatial behavior. July 2023. American Society of Mammalogists Annual Meeting. Anchorage AK, USA.	July 2023	Study demonstrates repeatability and heritability of spatial behaviors in ungulates
Jackson-Smith, D., A. Armstrong, N. Mesner, Lorien Belton, N. Salant, P. Budy, and D. Stevens . 2012. A comparison of alternative approaches to measuring BMP implementation, maintenance, and effectiveness. National Water Conference, May 20-24, 2012, Portland, OR.	May 2012
Ironside, K.E., D. Mattson, D. Choate, D. Stoner, T. Arundel, J. Hansen, T. Theimer, B. Holton, B. Jansen, J. Sexton, K. Longshore, T. Edwards, Jr, and M. Peters. Offered poster, GPS telemetry: probability of fix acquisition. 2015 ESRI User Conference (UC), San Diego, California, 7/22/2015.	July 2015	GPS tracking devices deployed on large mamma ls often result in fa led GPS fix attempts. When the number of failed fix attempts surpasses 10% of all fix attempts there is the potential to bias analyses of habitat use, home range estimates, and measures of animal movements.
Hunter, L., T. C. Edwards, Jr., R. Toth, and R. J. Lilieholm. Potential human impacts on biodiversity: the Californoia Mojave as a case study. Poster presented at the 2000 Annual Meeting of the Population Association of America, Los Angeles, California, 3/24/00.	March 2000
Hunter, L., T. C. Edwards, Jr., R. Toth, and R. J. Lilieholm. Population, Land Use Change, and Species Endangerment in the California Mojave: Alternative Futures. Presented paper, 2001 Annual Meeting of the Population Association of America, Washington, D.C., 3/20/01.	March 2001
Homel, K., and P. Budy. 2006. The movement continuum: evaluating the migration patterns of juvenile bull trout (Salvelinus confluentus) in Northeast Oregon. Poster Presentation. American Fisheries Society, Bonneville Chapter Meeting, Park City, UT. Best Poster Presentation Award ($500).	March 2006
Homel, K., and P. Budy. 2006. The influence of abiotic and biotic factors on the migration timing of subadult bull trout (Salvelinus confluentus) in Northeast Oregon. Invited. Bull Trout Symposium at the American Fisheries Society, Western Division Meeting, Bozeman MT.	May 2006
Homel, K., and P. Budy. 2006. Evaluating the genetic population structure and movement patterns of bull trout (Salvelinus confluentus) in Northeast Oregon. American Fisheries Society, National Meeting, Lake Placid, NY. Best Student Paper Award ($500).	September 2006
Homel, K. and P. Budy. 2005. The influence of abiotic and biotic factors on the movement patterns of bull trout (Salvelinus confluentus) in Northeast Oregon. Bonneville Chapter of American Fisheries Society, Garden City, UT.	March 2005
Homel, K. and P. Budy. 2005. Evaluating genetic variation between life-history forms of bull trout (Salvelinus confluentus) in Northeast Oregon. American Fisheries Society, National Meeting, Anchorage, AK.	September 2005
Hersey, K, R. T. Larsen, B. R. McMillan, C.D. Jones, and T. C. Edwards, Jr. Cause-specific mortality in mule deer: Influence of nutritional condition and age. Offered presentation, 2020 ESA Annual Meeting (Virtual).	August 2020	Determinations of compensatory and additive mortality have considerable implications for understanding limiting factors of a population. Our results suggest that coyotes are killing adult deer in relatively poor condition with an increased risk of dying from other causes (i.e., malnutrition), while, conversely, mountain lions are killing adult deer in better condition with higher probability of survival indicating the potential for a more additive effect.
Heredia, N.A., P. Budy, and G.P. Thiede. The influence of food web dynamics on the growth and production of Lahontan cutthroat trout, in Pyramid Lake, NV. 2013 Annual Meeting of the American Fisheries Society. Little Rock, AR, 8-12 September 2013.	September 2013	My project focuses on food web interactions in Pyramid Lake, NV, and how these interactions influence the production off Lahontan cutthroat trout, an important game fish and threatened species. As a result of this research, I am to determine the factors that limit fish growth and production.
Heredia, N.A., P. Budy, and G.P. Thiede. 2013. The influence of food web dynamics on the growth and production of Lahontan cutthroat trout, in Pyramid Lake, NV. 2013 Western Division, American Fisheries Society Annual Meeting, Boise, ID, 15-18 April 2013.	April 2013	My project focuses on food web interactions in Pyramid Lake, NV, and how these interactions influence the production off Lahontan cutthroat trout, an important game fish and threatened species. As a result of this research, I am to determine the factors that limit fish growth and production.
Heredia, N., P. Budy, and G.P. Thiede. 2012. Food web interactions in Pyramid Lake, Nevada: identifying factors limiting the performance of Lahontan cutthroat trout. Western Division, American Fisheries Society, Annual Meeting, March 26-29, 2012, Jackson, WY.	March 2012
Heredia, N. A., P. Budy, and G. P. Thiede. 2012. Food Web Interactions in Pyramid Lake, Nevada: Factors Influencing Lahontan Cutthroat Trout Growth and Production. American Fisheries Society, National Meeting, August 19-23, Minneapolis, MN.	August 2012
Healy, Brian D. 1, 2, Robert C. Schelly2, Charles B. Yackulic3, Emily C. Omana Smith2,4, and Phaedra Budy5. Rapid native fish recovery following salmonid suppression varies along environmental gradients in a Colorado River tributary in Grand Canyon, Arizona. Oral Presentation: Advances in the Population Ecology of Stream Salmonids V, Granada, Spain, May 20-24, 2019.	May 2019	Native river fishes of arid regions are particularly vulnerable to the impacts of invasive species and habitat alteration, as many evolved specialized life history strategies for highly dynamic ecosystems subject to extreme variation in temperature, flow volume, and sediment load, with seasonal flooding during snowmelt and monsoons. Our results suggest rapid recovery of imperiled native fishes can be achieved through suppression of salmonids, but greater effort may be necessary where stream tem
Healy, B.D., R. C. Schelly, C. B. Yackulic, E.C. Omana Smith, M.M. McKinstry, M.M. Conner, and P. Budy. Native Fish Population Responses to Mechanical Suppression of Invasive Brown Trout in a Grand Canyon Tributary. Oral Presentation: American Fisheries Society and The Wildlife Society Joint Conference, Reno, Nevada, September 30-October 3, 2019.	October 2019	Once established, invasive fishes are difficult and costly to remove, and environmental variation can confound attempts to quantify population-level responses of native fishes to invasive fish suppression. We assess: 1) trends in abundance and demographic rates of fishes concurrent with stream-wide mechanical salmonid suppression; and 2) salmonid density, hydrological, electrofishing effort (total hours), and spatial-thermal variables as predictors of native fish distribution and abundance usi
Hansen, E.S., P. Budy, and G.P. Thiede. 2006. Evaluating the effectiveness of passive stream restoration for improving native fish health and reducing the impacts of whirling disease. American Fisheries Society, Bonneville Chapter Annual Meeting ?Fish in the Balance?. Park City, UT.	March 2006
Hansen, E. S., P. Budy, and G.P. Thiede. 2006. Evaluating the effectiveness of passive stream restoration for improving native fish health and reducing the impacts of whirling disease. 12th Annual Whirling Disease Symposium, 'War of the Whirlds'. Denver, CO.	February 2006
Hansen, E. S., P. Budy, G. P. Thiede. 2007. Using passive restoration to reduce the impact of whirling disease. American Fisheries Society, Oregon Chapter 43rd Annual Meeting ?Big Fish Over Big Dams: Complexities, Controversies, Opportunities?. Eugene, Oregon, February 28, 2007.	February 2007
Hansen, E. S., P. Budy, G. P. Thiede. 2007. Examining the potential of riparian restoration as a means to minimize the impact of whirling disease. American Fisheries Society, Bonneville Chapter Annual Meeting ?Fish Management, A United Approach?. Logan, Utah, March 20, 2007.	March 2007
Hansen, E. S., P. Budy, G. P. Thiede. 2006. Evaluating the effects of passive stream restoration on riparian and benthic habitat, and ultimately fish health. North American Benthological Society, 54th Annual Meeting. Anchorage, AK.	May 2006
Hafen, T., P. Budy, B. Maloney, and G. Thiede. 2017. Growth of bluehead sucker under different temperature and flow regimes. Poster Presentation, Joint Meeting of the Colorado-Wyoming and Utah Chapters of the American Fisheries Society 2017, Grand Junction, Colorado, USA.	February 2017	Presentation on an undergraduate's research study.
Hafen, T., N. Barrett, G.P. Thiede, and P. Budy. 2018. Ecological effects of lake characteristics and arctic char presence on cohabiting native fish assemblages, demographics, and trophic niche. Oral presentation at the Utah Chapter of the American Fisheries Society annual meeting, Ogden, Utah. 13-15 March 2018.	March 2018	These results highlight the complexity of the factors determining community structure of fishes in lakes and suggest there is still a need to better isolate the role of biotic versus abiotic factors, in particular in the face of a changing climate.
Hafen, T., G.P. Thiede, and P. Budy. 2016. Temporal and spatial variation in diets of mottled sculpin in the Logan River, Utah. Poster presentation. Annual Meeting of the Utah Chapter of the American Fisheries Society, Altamont, Utah, 16-17 March 2016.	March 2016	This study provides a more complete understanding of the feeding ecology of an important native fish; and demonstrates that cannibalism is determined by size.
Hafen, K., W.C. Saunders, and P. Budy. 2012. Effects of impoundments on brown trout source-sink dynamics in the Logan River, Utah: Conservation implications for endemic Bonneville cutthroat trout. Poster Presentation. Utah Chapter, American Fisheries Society, Annual Meeting, March 26-29, 2012, Bullfrog, UT.	March 2012
Hadley, M. J. and P. Budy. 2003. Comparison of growth of stocked rainbow trout in Flaming Gorge Reservoir, Utah-Wyoming to potential maximum growth. Poster. Bonneville Chapter of the American Fisheries Society, Grand Junction, CO.	March 2003
Guttery, M.R., and T.C. Edwards, Jr. Landscape conservation planning: identification of watersheds with high conservation potential across Utah and the Colorado Plateau Ecoregion. Offered paper, 2015 Annual Meeting of the Utah Chapter of The Wildlife Society, Moab, Utah, 3/19/15.	March 2015	We are working with various stakeholders (Utah Watershed Restoration Initiative, BLM, Southern Rockies Landscape Conservation Cooperative, etc) to identify a suite of quantifiable restoration and/or conservation objectives (i.e., value models), and to use the conservation planning software Marxan in conjunction with Utah and Colorado Plateau REA spatial data layers to produce objective rankings of watershed restoration potential under each pre-specified value model (e.g., maximizing water quali
Grob N., J. Kilmer, G.P. Thiede, and P. Budy. 2019. Are sculpin too slimy to count? An estimation of the abundance of Cottus cognatus in two arctic lakes. Poster presentation. Annual Meeting of the Utah Chapter of the American Fisheries Society, St. George, Utah, 26-27 February 2019.	February 2020	This work has implications for fisheries management in arctic lakes which may be influenced by a changing climate.
Grilo, C., M. Cruz, J. A. Bissonette, and M. Santos-reis. 2006. The role of patch size and isolation to carnivore relative abundance in an oak woodland landscape. Presented at the 1st European Congress of Conservation Biology, 22-26 August, Eger, Hungary.	August 2006
Grilo, C., M. Cruz, J. A. Bissonette, and M. Santos-Reis. 2008. Sensitivity of carnivores to habitat fragmentation from a multi-scale perspective. Poster presented at the 23rd Annual Landscape Ecology Symposium, Madison Wisconsin, 6-10 April 2008.	April 2008
Grilo, C., J. A. Bissonette, and M. Santos-Reis. 2007. Effects of road mortality on mustelids in southern Portugal: Sensitivities and management implications. Presented at the 25th Mustelid Colloquium, Prague Czech Republic, 4-7 October.	October 2007
Grilo, C., C. Silva, C. Baltazar, L. Gomes, J. Bissonette, & M. Santos-Reis. 2007. Patterns of carnivore road casualties in southern Portugal. ICOET meeting, Little Rock, AR, 20-25 May 2007.	May 2007
Gresswell, R.E., P. Budy, C.S. Guy, M.J. Hansen, M. Jones, P.J. Martinez, C. Suski, and J.E. Williams. 2012. Role of External Peer Review in Supporting Invasive Species Suppression Efforts. Invited Presentation. American Fisheries Society, National Meeting, August 19-23, 2012, Minneapolis, MN.	August 2012
Goethlich, J. S.L. Klobucar, D.H. Ogle, and P. Budy. 2015. The effects of experimental lake fertilization on condition and diet of slimy sculpin (cottus cognatus) in oligotrophitc arctic lakes, North Slope, AK. Annual Meeting, WIsconsin Chapter of the American Fisheries Society, Eau Claire, WI, Februaru 24-26, 2015.	February 2015	We measured the effects of a long-term lake fertilization experiment on slimy sculpin in arctic lakes. This simulation simulates expected nutrient increases in these lakes as a result of climate change.
Gibson, J.R., G.G. Moisen, T.S. Frescino, and T.C. Edwards, Jr. Assessing the effect of using fuzz/swapped vs. real coordinates on species distribution models in Piñon-Juniper forests. 2010 Annual Forest Inventory and Analysis Symposium, Knoxville, Tennessee, 6 October 2010.	October 2010
Gibson, J., T. C Edwards, Jr., and G. G. Moisen. Forecasting climate induced distribution shifts for the conifers of North America’s arid interior west. Offered paper, 2009 Meeting of the U.S. Chapter of the International Association for Landscape Ecology, Snowbird, Utah, 4/13/2009.	April 2009
Gibson, J. R., T. C. Edwards, Jr., G. G. Moisen, and N. Zimmermann. Forecasting climate induced distribution shifts for the pinions and junipers of the Western U.S. Poster presented at the 94th Annual Meeting of the Ecological Society of America, Albuquerque, New Mexico, 8/7/09.	August 2009
Gibson, J. R., T. C. Edwards, Jr., G. G. Moisen, and N. Zimmermann. Forecasting climate induced distribution shifts for conifers in Western North America. Offered paper, 10th Biennial Conference for Research on the Colorado Plateau, Flagstaff, Arizona, 10/7/09.	October 2009
Gibson, J. R., T. C. Edwards, Jr., G. G. Moisen, T. Frescino, A. Psomos, and N. E. Zimmermann. Contraction and expansion zones in western North America piñon-juniper woodlands under projected 21st century climate change. Offered paper, 8th Biennial Conference of the International Biogeography Society, Tucson, AZ, 1/10/2017.	January 2017	We develop climate-based distribution forecasts for piñon and juniper species which delineate distributions into zones under tension of expansion, contraction, and persistence based on multidecadal climate variation around forecast 21st century climate change.
Gibson, J. R., G. G. Moisen, T.S. Frescino, and T. C. Edwards, Jr. Distribution shifts of coniferous forests in the Colorado plateau under projected 21st century climate change. Offered paper, 2014 Meeting of the U.S. Chapter of the International Association for Landscape Ecology, Anchorage, Alaska, 5/19/2014.	May 2014	Forests of North America’s arid interior west are predominantly composed of coniferous species, stratified into physiognomic zones along elevationally-induced gradients of temperature and moisture. Recent climate change has caused widespread mortality throughout all of these life zones, and projected climate change will likely drive shifts in the distribution of life zones.
Gibson, J. R., G. G. Moisen, T.S. Frescino, and T. C. Edwards, Jr. Contraction and expansion tension zones in Western North America piñon-juniper woodlands under projected climate change. Offered paper, The 11th Biennial Conference of Research on the Colorado Plateau, Flagstaff, Arizona, 10/26/2011.	October 2011
Gary P. Thiede, Phaedra Budy, Peter MacKinnon, Dave Speas, Matt Breen, and Kevin McAbee. 2014. Frequent tributary usage by the endangered and large-river fishes of the Upper Colorado River basin. Western Division AFS meeting, Mazatlan, Mexico, April 2014.	April 2014	Our findings demonstrate use and the importance of small tributaries and their fragile habitats to endangered fishes in the Colorado River Basin.
Gary P. Thiede, Janice Brahney, Sabrina Buhler, Lexi Aragon, Eleni Robinson, Phaedra Budy. 2023. Tires in trout: microplastic uptake by aquatic stream organisms. Advances in the Population Ecology of Stream-dwelling Salmonids VI. Mallorca, Spain. 8 - 12 May 2023.	May 2023	Microplastics are ubiquitous in wildland areas of the western United States. Our findings confirmed the high presence of microplastics in three trophic levels of a freshwater food web in a mountain stream, which corroborates numerous studies implicating the global distribution of microplastics.
Gary P. Thiede, Casey A. Pennock, and Phaedra Budy. 2023. Density-dependent processes and population dynamics of native sculpin in a mountain river. Utah Chapter of the American Fisheries Society conference in St. George Utah, 27 Feb - 1 March 2023.	March 2023	Understanding the processes governing population dynamics is important for effective conservation and environmental management. Our results suggest sculpin populations are regulated largely by density-dependent processes and match those from other studies on sculpin population dynamics including a range of species and habitats that differ vastly in abiotic conditions.
Gaeta, J. and P. Budy. 2017. Reservoir and Lake Fish Dynamics under a climate of change and multi-year drought. Invited Symposium, Western Division, American Fisheries Society Annual Conference, Missoula, MT, May 22-25.	May 2017	In the intermountain West, the changing climate and extended drought have resulted changes in both the magnitude and variability of lake and reservoir elevation. In this symposium, we will start with several talks on the changing climate, the altered hydrologic regime and volume, and associated physical changes to reservoirs including limnological (temperature, oxygen) and structural changes (littoral habitat).
Friesen, B., P. Budy and C. Pennock. 2024. Identifying the drivers of entrainment risk of nonnative fishes through Glen Canyon Dam as a function of fluctuating reservoir elevation. 2024 Colorado River Researchers Meeting, Grand Junction, CO. 30-31 January 2024.	January 2024	Long term drought and overallocation of water have negative ecological implications in the Colorado River Basin. Here, we explore the likelihood of nonnative fish in Lake Powell becoming entrained in Glen Canyon, surviving such entrainment, and entering the lower CO River (Grand Canyon).
Friesen, B., P. Budy and C. Pennock. 2023. Characterizing the fish assemblage in the Lake Powell forebay and identifying the potential for nonnative fish escapement into the Lower Colorado River. 2023 Western Division of the American Fisheries Society Annual Meeting, Boise, ID. 8-11 May, 2023.	May 2023	Long term drought and overallocation of water have negative ecological implications in the Colorado River Basin. Here, we explore one facet with respect to nonnative fish in Lake Powell potentially becoming entrained in Glen Canyon and entering the lower CO River (Grand Canyon).
Friesen, B., P. Budy and C. Pennock. 2023. Characterizing the fish assemblage in a reservoir forebay and identifying the potential for nonnative fish escapement into a desert river. 2023 Colorado River Researchers Meeting, Grand Junction, CO. 31 January - 1 February 2023.	January 2023	Long term drought and overallocation of water have negative ecological implications in the Colorado River Basin. Here, we explore one facet with respect to nonnative fish in Lake Powell potentially becoming entrained in Glen Canyon and entering the lower CO River (Grand Canyon).
Friesen, B., P. Budy and C. Pennock. 2023. Characterizing the fish assemblage in a reservoir forebay and identifying the potential for nonnative fish escapement into a desert river. 2023 Colorado River Aquatic Biologists Meeting, Laughlin, NV. 4-5 January 2023.	January 2023	Long term drought and overallocation of water have negative ecological implications in the Colorado River Basin. Here, we explore one facet with respect to nonnative fish in Lake Powell potentially becoming entrained in Glen Canyon and entering the lower CO River (Grand Canyon).
Friesen, B., P. Budy and C. Pennock. 2022. Characterizing the fish assemblage in a reservoir forebay and identifying the potential for nonnative fish escapement into a desert river. 2022 Desert Fishes Council Annual Meeting, St. George, UT, 16-20 November 2022.	November 2022	Long term drought and overallocation of water have negative ecological implications in the Colorado River Basin. Here, we explore one facet with respect to nonnative fish in Lake Powell potentially becoming entrained in Glen Canyon and entering the lower CO River (Grand Canyon).
Finch, C., Budy, P., and Belmont, P. 2016. A future of fire, floods, and fish. Ecological Society of America Annual Meeting 2016. Fort Lauderdale, Florida, 7-12 August 2016.	August 2016	An evaluation of the probability that Bonneville cutthroat trout persist through future forest fires based on habitat quality and connectivity.
Finch, C., Budy, P., and Belmont, P. 2016. A future of fire, floods, and fish. American Fisheries Society Utah Chapter Annual Meeting. Altamont, Utah, March 15-17 2016.	March 2016	An evaluation of how fire affect trout habitat quality and connectivity, as well as how future fires might influence persistence of Bonneville cutthroat trout.
Finch, C. and P. Budy. 2015. Bringing back the trout: metapopulation viability of Bonneville cutthroat trout in a fire-impacted watershed. Utah chapter of the American Fisheries Society annual meeting, Moab, Utah 24-26 March 2015.	March 2015	I am presenting results from an original metapopulation viability model of Bonneville cutthroat trout, a species of conservation concern in Utah. The model is parameterized with fire recurrence information to improve future management.
Finch, C. and P. Budy. 2015. Bringing back the trout: metapopulation viability of Bonneville cutthroat trout in a fire-impacted watershed. Restoring the West conference, Logan, Utah. October 28-29, 2016.	October 2015	Results from a simulation that predicts whether an imiportant population of Bonneville cutthroat trout can survive future fire disturbance. Connectivity and asynchronous fire perturbation increase metapopulation resilience.
Finch, C. and P. Budy. 2014. Habitat mediated dispersal and recolonization in stream fish following a severe fire. Poster. Joint Aquatic Sciences Meeting; Portland, OR; May 18-23, 2014.	May 2014	This research provides data on how fish populations disperse and recolonize after a sever fire.
F. Loureiro, F., J. A. Bissonette, D. W. Macdonald and M. Santos-Reis. 2006. Pulsed resources in a Mediterranean Landscape and their importance to Eurasian badgers conservation . Poster presented at the 1st European Congress of Conservation Biology, 22-26 August, Eger, Hungary.	August 2006
Edwards, T.C., Jr., and R.D. Fitts. Rare plant community composition and distribution modelling: assessing landscape-scale risk from non-renewable energy development. Presented paper, US-IALE 2018 Annual Meeting, Chicago, IL, 4/11/2018.	April 2018	Evaluated sue of multi-species of plant communities as a means of assessing risk from co-located energy development
Edwards, T.C., Jr., N.E. Zimmerman, G.G. Moisen, T.S. Frescino, J.A. Blackard. Testing the partial contributions of remotely sensed and topo-climatic predictors for tree species habitat modeling in Utah. Paper presented at the Seventh Annual Forest Inventory and Analysis Symposium, Portland, Maine.	October 2005
Edwards, T.C., Jr., J. R. Gibson, G. G. Moisen, and T.S. Frescino. Forecasting climate-induced distribution shifts for the pinyon- juniper complex of the Western U.S. Offered paper, 2011 Meeting of the U.S. Chapter of the International Association for Landscape Ecology, Portland, Oregon, 4/6/2011.	April 2011
Edwards, T.C., Jr., F. Kienast, and J. Bolliger. The effectiveness of agro-environmental conservation programs in maintaining high alp meadow biodiversity. Invited paper, 2011 Meeting of the U.S. Chapter of the International Association for Landscape Ecology, Portland, Oregon, 4/4/2011.	April 2011
Edwards, T.C., Jr., D.C. Stoner, J.O. Sexton, H.H. Bernales, and J.R. Nagol. Productivity of mule deer tracks phenological variability over a latitudinal gradient. Offered paper, 2015 Annual Meeting of the Utah Chapter of The Wildlife Society, Moab, Utah, 3/19/15.	March 2015	We used satellite-derived indices of primary production in conjunction with standardized survey data collected by state wildlife agencies to evaluate the reproductive response of mule deer (Odocoileus hemionus) to plant phenology across a latitudinal gradient in the American Southwest. Mule deer demonstrated a significant reproductive response to phenological variation across latitude, in which birthing schedules tracked the peak of the growing season.
Edwards, T.C., Jr., D.C. Stoner, J.O. Sexton, H.H. Bernales, and J.R. Nagol. Productivity of mule deer tracks phenological variability over a latitudinal gradient. Offered paper, 2015 Annual Meeting of the The Wildlife Society, Winnipeg, Manitoba, Canada, 10/19/15.	October 2015	Understanding how plant phenology influences patterns in ungulate reproduction is important for monitoring and predicting changes in distribution, abundance, and population trends of these socially and ecologically important species. We used satellite-derived indices of primary production in conjunction with standardized survey data collected by state wildlife agencies to evaluate the reproductive response of mule deer (Odocoileus hemionus) to plant phenology across a latitudinal gradient in th
Edwards, T.C., Jr. Education and training in the proper development and application of species and habitat distribution models in management and conservation: overview of prpsoed courses. 84th North American Wildlife and Natural Resources,, AFWA Science and Policy Working Group, Denver, CO, 3/6/2019 (INVITED)	March 2019	At the level of the Endangered Species Act (ESA), distributions are clearly integral to the vast bulk of ESA-related Federal Register documentation, as well as being an integral part of most state-based Wildlife Action Plans (WAP). This presentation provides a short overview of potential applications of SDHMs, and focuses on means to enhance the defensibility of such models and reduce their decision-risk in application arenas.
Edwards, T.C., Jr. Education and training in the proper development and application of species and habitat distribution models in management and conservation: accomplishments CY2019. Association of Fish and Wildlife Agencies 2019 Annual Metting, Threatened and Endangered Species, St. Paul, MN, 9/24/2019 (INVITED)	September 2019	Species distribution and habitat models (SDHM) represent output from an analytical flow that first organizes plant and animal locations, then applies a wide range of statistical algorithms to model relationships between the locations and sets of environmental predictors. The presentation blends aspects of decision-risk associated with SDHM construction and application examples.
Edwards, T.C., Jr. Constructing realistic species distribution and habitat modelling map products: an education and training program for biologists. US Fish and Wildlife Service, Region 2, San Antonio, TX 10/8/2019 (INVITED)	October 2019	Species distribution and habitat models (SDHM) represent output from an analytical flow that first organizes plant and animal locations, then applies a wide range of statistical algorithms to model relationships between the locations and sets of environmental predictors. The presentation blends aspects of decision-risk associated with SDHM construction and application examples.
Edwards, T.C., Jr. Bridging the gap between researchers, planners and decision-makers for improving species conservation decision-making. US-International Association for Landscape Ecology 2019 Annual Meeting, Ft. Collin, CO, 4/8/2019 (SYMPOSIUM ORGANIZER: 15 speakers)	April 2019	The theoretical and conceptual bases for species distribution models and analogues (SDM) are well-grounded in published literature, but direct application to management and conservation of species on landscapes lags behind. The central aim of the session is to explore reasons why SDMs are not better incorporated into landscape conservation, and provide guidance for future developers of SDMs.
Edwards, T.C., Jr. Bridging the gap between researchers, planners and decision-makers for improving species conservation decision-making across landscapes: lessons from a region biologically rich and heavy in resource extraction. International Association for Landscape Ecology 2019 World Congress, Milan, Italy, 7/2/2019 (INVITED)	July 2019	Virtually all spatially-based (landscape-scale) management and conservation relies to some extent on knowledge of species distributions. This presentation provides a short overview of potential applications of SDHMs, and focuses on means to enhance the defensibility of such models and reduce their decision-risk in application arenas.
Edwards, T.C., Jr. Assessing decision-risk in range maps and distribution models for use in conservation and management. US Fish and Wildlife Service, Region 6, Denver, CO, 3/5/2019 (INVITED)	March 2019	Species distribution and habitat models (SDHM) represent output from an analytical flow that first organizes plant and animal locations, then applies a wide range of statistical algorithms to model relationships between the locations and sets of environmental predictors. The presentation blends aspects of decision-risk associated with SDHM construction and application examples.
Edwards, T.C., Jr. Assessing decision-risk in range maps and distribution models for use in conservation and management. 84th North American Wildlife and Natural Resources, AFWA Threatened and Endangered Species, Denver, CO, 3/8/2019 (INVITED)	March 2019	At the level of the Endangered Species Act (ESA), distributions are clearly integral to the vast bulk of ESA-related Federal Register documentation, as well as being an integral part of most state-based Wildlife Action Plans (WAP). This presentation provides a short overview of potential applications of SDHMs, and focuses on means to enhance the defensibility of such models and reduce their decision-risk in application arenas.
Edwards, T.C., Jr. All for Data Access, Data Access for All!: a discourse on how restricted access to data negatively affects fisheries and wildlife management, 2019 Joint AFS/TWS Meeting, Reno, NV, 9/24/2019 (SYMPOSIUM ORGANIZER: 16 speakers)	October 2019	The lack of open, unfettered access to data sources used in distribution and habitat models affecting management, irrespective of source, negatively impacts the science underlying the proper management of our national resources. Our goal in this opinion piece is to challenge arguments favoring "data silos," arguments we believe continue to foster 20th Century data control at the expense of information age technological and analytical advancements that have potential to revolutionize resource m
Edwards, T.C., Jr. Constructing Realistic Species Distribution and Habitat Modelling (SDHM) Map Products: Challenges and Opportunities. Invited USGS (seminar), EMA Friday USGS Findings Webinar Series, June 5, 2020.	June 2020	Virtually all spatially-based (landscape-scale) management and conservation relies to some extent on knowledge of species distributions. At the level of the Endangered Species Act (ESA), distributions are clearly integral to the vast bulk of ESA-related Federal Register documentation, as well as on the USFWS ECOS site. In addition, defensible distributions are an integral part of most state-based Wildlife Action Plans (WAP), as well as being important to land management agencies such as the BLM
Edwards, T.C., Jr. 2010. Evaluating species distribution models: what, why and how? Invited paper, University of Lausanne, Lausanne, Switzerland, 20 May, 2010	May 2010
Edwards, T.C., Jr. 2010. Ensemble modelling approaches in forecast environments: reasons the “best” Switzerland, 22 September 2010.	September 2010
Edwards, T.C., Jr. Using plant community composition as a means of assessing biodiversity risk to climate change. Presented paper, International Biogeographical Society Meeting, Climate Change Biogeography, Evora, Portugal, 3/22/2018.	March 2018	Evaluated use of mulit-species modelling approach to assess risk by climate change to plant communities.
Edwards, T.C., Jr, J. Gibson, G.G. Moisen, T.S. Frescino, and N.E. Zimmermann. Expansion and contraction tension zones in western US piñon-juniper woodlands under projected climate change. Offered paper, 6th Biennial Meeting of the International Biogeography Society, Miami, Florida, 1/10/2013.	January 2013	We developed bioclimatic distribution models and applied climate change scenarios to gauge potential shifts in the distributions of individual species and their co-occurrence. Our results suggest individualistic responses of species to climate change will likely cause shifts in their spatial co-occurrence.
Edwards, T.C., Jr, J. Gibson, G.G. Moisen, T.S. Frescino, and N.E. Zimmermann. Expansion and contraction tension zones in western US piñon-juniper woodlands under projected climate change.	April 2013	We developed a series of models examining the projected changes in distributions due to climate shifts, exploring how these changes might increase hybridization.
Edwards, T.C., Jr, J. Gibson, G.G. Moisen, T.S. Frescino, and N.E. Zimmermann. Differential life stage niche modelling: can we construct species fitness landscapes from species distribution models? Offered paper, 2014 Meeting of the U.S. Chapter of the International Association for Landscape Ecology, Anchorage, Alaska, 5/19/2014.	May 2014	Here we develop sets of stage-based distribution models as a means of exploring these zones of distribution tension in six conifers from the mid-latitude dry domain of western North America. These differential life stage distributions, when coupled with climate projection models, indicate higher risk to smaller distribution zones of seedlings that zones of adult persistence.
Edwards, T.C. Jr., R.W. Hergert, R. D. Fitts, and F. Kienast. An optimization approach to assessing landscape-scale energy development effects on rare plant species in the Colorado Plateau of western North America. Invited paper, 9th International Association of Landscape Ecology World Congress, Portland, OR, 7/7/15.	July 2015	We modeled the distribution of 15 plant species under consideration for ESA listing, with an objective of minimizing the spatial conflict between energy extraction and plant-specific distributions. Results indicate that upwards of 80% of the higher energy potentials could be realized while affording protection of 80% of the combined modeled and known distributions of the species.
Edwards, T.C. Jr., J. R. Gibson, and E. Hammill. Selecting optimal watersheds for restoration efforts in the Colorado Plateau of western North America given economies of energy development. Offered paper, 2016 Annual Meeting U.S. Chapter of the Association of Landscape Ecology, Asheville, NC, 4/5/16.	April 2016	The Colorado Plateau of western North America contains large energy reserves currently under development or proposed for development. Using a MARXAN framework, we ran 5 different scenarios of restoration potential vs. energy development and rank-ordered the locations of potential restoration from highest to lowest.
Edwards, T.C. Jr., J. R. Gibson, and E. Hammill. Selecting optimal watersheds for restoration efforts in the Colorado Plateau of western North America given economies of energy development. Offered paper, 2016 Annual Meeting U.S. Chapter of the Association of Landscape Ecology, Asheville, NC, 3/5/16.	April 2016	Using a MARXAN optimization framework, we ran 5 different scenarios of restoration potential vs. energy development and rank-ordered the locations of potential restoration from highest to lowest. Restoration potential was based on ability to manipulate current habitat within watersheds given sets of biodiversity.
Edwards, T. C., Jr., R. Cutler, and J. Alegria. Using FIA data to develop model-assisted designs for samping rare ecological events. Presented paper, Joint Meeting of the 5th Annual Forest Inventory and Analysis Symposium and The Southern Mensurationists, New Orleans, Louisiana, 11/18/03.	November 2003
Edwards, T. C., Jr., J. Gibson, G. Moisen, and N. Zimmermann. Forecasting climate-induced distribution shifts in Western North American conifers. Invited paper, IUFRO Division 4 Conference on Extending Forest Inventory and Monitoring, Quebec City, Canada, 5/21/2009.	May 2009
Edwards, T. C., Jr., J. Bolliger, and F. Kienast. Assessing the effectiveness of agro-environmental conservation programs in maintaining high Alp meadow biodiversity. Invited paper, 2009 Meeting of the European Chapter of the International Association for Landscape Ecology, Salzburg, Austria, 7/15/2009.	July 2009
Edwards, T. C., Jr., G. Moisen, A. Guisan, N. Zimmermann, and W. Thullier. Modelling species under global change scenarios: more questions than answers. Invited paper, 2009 Meeting of the U.S. Chapter of the International Association for Landscape Ecology, Snowbird, Utah, 4/14/2009.	April 2009
Edwards, T. C., Jr., F. Kienast, and J. Bolliger. Assessing the effectiveness of agro-environmental conservation programs in maintaining high alp meadow. Offered paper, 2010 Meeting of the U.S. Chapter of the International Association for Landscape Ecology, Athens, Georgia, 4/6/10.	April 2010
Edwards, T. C., Jr., D. R. Cutler, and K. Beard. Predictive modelling of invasive plants on National Park lands: a preliminary analysis. Paper presented at the National Park Service Annual Inventory and Monitoring Meeting, Seattle, Washington, 8/9/05.	August 2005
Edwards, T. C., Jr., D. R. Cutler, and K. Beard. A process for determining the likelihood of invasive establishment in national parks. Paper presented at the National Park Service Annual Inventory and Monitoring Meeting, San Diego, California.	February 2006
Edwards, T. C., Jr. Shrubsteppe monitoring and avian species management. Presented paper, 2005 Meeting of the Utah Partners in Flight , Sherwood Hills, Utah, 4/15/05.	April 2005
Edwards, T. C., Jr. Valdiating forecast models under global change scenarios: the key to utility and application. Invited paper, Annual Meeting on Biodiversity and Ecosystem Changes in Europe (ECOCHANGE), Cluj-Napoca, Romania, 5/12/08.	May 2008
Edwards, T. C., Jr. Time and species distribution modelling: a conceptual process for movig beyond static prediction maps. Invited paper, Third Workshop on Species Distribution Modelling, Riederalp, Swizterland, 8/11/08.	August 2008
Edwards, T. C., Jr. Random Forests: applications to conservation issues (subtitled: Is the forest really better than the tree? And what if you’re in the grasslands?). Invited paper, workshop on Random Forests, 2009 Meeting of the U.S. Chapter of the International Association for Landscape Ecology, Snowbird, Utah, 4/15/2009.	March 2009
Edwards, T. C., D. R. Cutler, N. E. Zimmermann, L Geiser and G. G. Moisen. Landscape-level classification models in ecology: effects of sample survey design on prediction accuracy. Paper presented at the 21st Annual Symposium of the International Association for Landscape Ecology, U.S. Regional Association, San Diego, California, USA.	March 2006
Edwards, T. C. Jr., R. D. Fitts, C. Keleher, C. Bailey, J. R. Gibson, and E. Hammill. Rare plants conservation and non-renewable energy development in the Colorado Plateau of western North America: can landscape–scale models actually help? Presented paper, 2017 Annual Meeting U.S. Chapter of the Association of Landscape Ecology, Baltimore, MD, 4/10/2017.	April 2017	The Colorado Plateau is also home to considerable biodiversity, especially rare plant species having limited distribution and localized adaption. We modeled the distributions of 21 plant species currently listed under ESA, or under consideration as sensitive species by management agencies, with an objective of minimizing the spatial conflict between non-renewable energy extraction and plant-specific distributions.
Edwards, T. C. Jr., R. D. Fitts, C. Keleher, C. Bailey, J. R. Gibson, and E. Hammill. Can landscape-scale models be applied to resolving rare plants conservation and energy conflicts in the Colorado Plateau region of western North America? Invited paper, 2017 Meeting of the Association of Landscape Ecology - Europe, Gent, Belgium, 9/15/2017.	September 2017	We modeled the distributions of 21 plant species currently listed under ESA, or under consideration as sensitive species by management agencies, with an objective of minimizing the spatial conflict between non-renewable energy extraction and plant-specific distributions. Results indicate that upwards of 80% of the higher energy potentials could be realized while affording protection of 80% of the combined modeled and known distributions of the species.
Edwards, T. C. Jr., R. D. Fitts, C. Keleher, C. Bailey, J. R. Gibson, and E. Hammill. An optimization approach to assessing landscape-scale energy development effects on rare plant species in the Colorado Plateau of western North America. Invited paper, 82nd North American Wildlife and Natural Resources Conference, Spokane, WA, 3/6/2017.	March 2017	We modeled the distributions of 21 plant species currently listed under ESA, or under consideration as sensitive species by management agencies, with an objective of minimizing the spatial conflict between energy extraction and plant-specific distributions. Results indicate that upwards of 80% of the higher energy potentials could be realized while affording protection of 80% of the combined modeled and known distributions of the species.
Edwards, Jr., T. C., Jr., J. R. Gibson, G. G. Moisen, T. Frescino, A. Psomos, and N. E. Zimmermann. Contraction and expansion zones in western North America piñon-juniper woodlands under projected 21st century climate change. Offered paper, 8th Biennial Conference of the International Biogeography Society, Tucson, AZ, 1/10/2017.	January 2017	The sky islands of southwestern North America represent an archipelago of distinct mountain ranges that link the Sierra Madre of northern Mexico and the Rocky Mountains of the western United States. Here, we evaluate the effects of six projected climate change models over 3 time steps on measures of isolation and connectivity among 11 montane coniferous species.
E. Zakrajsek, J. A. Bissonette and T. Cutler. 2000. Development of a bird avoidance model for Naval Air Facility, El Centro, CA. Second Joint Annual Meeting of the Bird Strike Committee USA/ Bird Strike Committee Canada, Minneapolis, MN	August 2000
E. F. Stuber, O. Robinson, E. R. Bjerre, M. C. Otto, B. A. Millsap, G. S. Zimmerman, and Viviana Ruiz-Gutierrez. 2022. The potential of semi-structured citizen science data as a supplement for conservation decision-making: Validating the performance of eBird against targeted avian monitoring efforts. Joint Meeting of the American Ornithological Society & BirdsCaribbean. Puerto Rico, USA. 27 June–2 July 2022	July 2022	Validates the performance of species abundance estimated by eBird in comparison with professionally run aerial surveys.
Dorathy, J., G.P. Thiede, and P. Budy. 2016. Two is better than one; using multiple methods to improve mottled sculpin density estimates in the Logan River, Utah. Poster presentation. Annual Meeting of the Utah Chapter of the American Fisheries Society, Altamont, Utah. 16 - 17 March 2016.	March 2016	In the Intermountain west, stream fish diversity is low and native sculpin represent an important member of the fish community; as such, accurate estimates of population abundance are critical for effective conservation and management.
Doden, E.S., J.K. Young, and P.Budy. 2019. One of the locals or new in town: Comparing resident and translocated beaver ecology at stream restoration sites. Poster Presentation: American Fisheries Society and The Wildlife Society Joint Conference, Reno, Nevada, September 30-October 3, 2019.	October 2019	Wildlife translocation is a valuable tool for recovering imperiled species, reducing human-wildlife conflict, and restoring degraded ecosystems. Translocation success is unpredictable because animals may disperse from the release site, die, fail to reproduce, or behave differently than naturally-occurring individuals. Our project helps to understand the complexities of wildlife translocation and improve the efficacy of beaver-assisted restoration.
Doden, E., Young, J.K., Budy, P. 2020. One of the locals or new in town: Comparing resident and translocated beaver ecology at stream restoration sites. Research-in-progress poster. USGS Utah CRU Annual Meeting. Logan, UT.	February 2020	This poster shows the results of the first field season for a Masters research project. It compares resident and translocated beaver space use and survival in two desert rivers in Utah.
Doden, E., Young, J.K., Budy, P. 2019. One of the locals or new in town: Comparing resident and translocated beaver ecology at stream restoration sites. Student research-in-progress poster. Joint TWS and AFS National Conference. Reno, NV.	September 2019	Beaver translocation is becoming a popular method of passive river restoration and can be particularly useful in arid systems, but success is variable and little is known about beaver ecology in desert systems. This poster compared the movements and fates of naturally occurring beavers and beavers translocated to desert rivers, collected during the first field season of a Masters research project.
Doden, E., Young, J.K., Budy, P. 2019. Comparison of resident and translocated beavers in desert stream restoration sites. Research proposal poster. USGS Utah CRU Annual Meeting. Salt Lake City, UT.	April 2019	This poster outlines the proposed project plan for a Masters student research project by Emma Doden. She is comparing resident and translocated beaver space use, survival, and activity patterns to evaluate the efficacy of beaver-assisted restoration.
Doden, E., Budy, P., and Young, J.K. 2021. Who leaves and who stays to build a dam? A comparison of resident and translocated beaver ecology in desert river restoration sites. Contributed oral presentation. The Utah Chapter of the Wildlife Society Annual Meeting. March 16-17, 2021. Virtual.	March 2021	This presentation communicates our completed survival analysis, and preliminary space use and dam building findings which will be included in Emma's Masters Thesis. These results help us to assess the efficacy of beaver translocation as a restoration tool by comparing the fates, space use, and dam building activity of naturally occurring and translocated beavers at desert river restoration sites.
Doden, E., Budy, P., and Young, J.K. 2020. A tale of two beavers: Are translocated beavers as effective as resident beavers in desert river restoration? Contributed oral presentation. The Wildlife Society National Conference 27 September – 1 October, 2020. Louisville, KY.	October 2020	Ecosystem engineers often drive increased species richness and greater habitat heterogeneity and can serve as a cost-effective, natural alternative to human restoration of degraded environments. American beavers (<i>Castor canadensis</i>) are considered ecosystem engineers because of their dam-building behavior, and as such they are being introduced to areas to restore degraded riparian habitats. Despite the popularity of beaver-assisted restoration, outcomes are variable and standardized best
Dibble, K.L., C. B. Yackulic, T. Kennedy, and P. Budy. 2014. Factors influencing the size of salmonids in regulated river systems: a synthesis of data from the Western United States. Joint Aquatic Sciences Meeting; Portland, OR; May 18-23, 2014.	May 2015	This research adds to data available to determine the factors which influence the size of fish in regulated river systems.
Dibble, K.L., C. B. Yackulic, T. Kennedy, and P. Budy. 2014. An examination of the processes that regulate fish size downriver of dams in the Western United States. 144th Annual Meeting of the American Fisheries Society; Quebec City, Canada; August 17-21, 2014.	August 2014	Provide data which may be helpful in the management of fish environments below dams.
Dean, A., P. Budy, and G.P. Thiede. 2010. A comparison of triploid vs. diploid brook trout relative performance in high Uinta lakes: who is the biggest loser? American Fisheries Society, Western Division, Salt Lake City, April 20-23, 2010.	April 2010
Dahle, K.S., and P. Budy. 2006. Predicting the growth potential of a shallow, warm-water sport fishery: a spatially explicit bioenergetics approach. American Fisheries Society, National conference, Lake Placid, NY.	September 2006
Dahle, K.S, and P. Budy. 2006. Predicting the growth potential of a shallow, warm-water sport fishery: a spatially explicit bioenergetics approach. American Fisheries Society, Bonneville Chapter Meeting, Park City, UT.	March 2006
Dahle, K.D., P. Budy, and G.P., Thiede. 2007. Predicting the growth potential of a warm water sport fishery: a spatially explicit bioenergetics approach. American Fisheries Society, Bonneville Chapter Annual Meeting. Logan, Utah, March 20, 2007.	March 2007
D.H. Weedop, G.P. Thiede, and P. Budy. 2020. Beyond the lakes: fishes of streams in an open lake system. Poster presentation. Annual Meeting of the Utah Chapter of the American Fisheries Society, St. George, Utah, 26-27 February 2020.	February 2020	This work and research have important implications regarding climate-induced changes that may occur in connected lake systems in the arctic.
D. Stoner, D., D. Dahlgren, J. Sexton, M. Kohl, R. Larson, N. Frey, T. Edwards, and T. Messmer. Using satellite-derived estimates of plant phenology to map sage grouse nesting dates across a climatological gradient. Utah Chapter of The Wildlife Society. Vernal, UT, 3/22/2018.	March 2018	Used satellite-derived estimates of plant phenology to map sage grouse nesting dates across a climatological gradient
Curtis Bjurlin, and J. A. Bissonette. 2001. Predation and Survival During Early Life History Stages of the Desert Tortoise in the South-Central Mojave Desert. Desert Tortoise Council Annual Symposium, Tucson AZ. March 15-18, 2001	March 2001
Cramer, P. and J. A. Bissonette. 2006. Wildlife passages: How does Utah compare to the rest of North America. Presented at the Utah Chapter of the Wildlife Society, Moab Utah, 1-3 March 2006	March 2006
Cramer, P. C., and J. A. Bissonette. Wildlife crossings in North America: The state of the science and practice. JPaper presented at the International Conference on Ecology and Transportation (ICOET), San Diego, 29 August-2 September 2005. Also presented at the TRB meeting, Washington, D.C. January 2006	September 2005
Cramer, P. C., and J. A. Bissonette. Wildlife and Roads: the State of the Science and Practice. 2005. Rockies Wildlife Crossing Field Course, Payson Arizona, 11 April 2005	April 2005
Cramer, P. C., and J. A. Bissonette. NCHRP 25-27 Update: Evaluation of the use and effectiveness of Wildlife Crossings in North America. Presented at the AASHTO Standing Committee on Highways Technical Meeting, Phoenix AZ, 4 May 2007	May 2007
Cramer, P. C., and J. A. Bissonette. 2007. Priorities for safely accommodating wildlife movement within transportation systems. Invited presentation to the Transportation Research Board Annual Meeting, Washington, D.C. January, 2007.	January 2007
Cramer, P. C., and J. A. Bissonette. 2007. Overview of NCHRP Project 25-27: Evaluation of the use and effectiveness of wildlife crossings. Invited presentation to the Transportation Research Board Annual Meeting, Washington, D.C. January, 2007.	January 2007
Cramer, P. C., and J. A. Bissonette. 2007. How do we make the roaded landscape more permeable for wildlife? Presented at the Annual Meeting of TWS, Tucson AZ, 23 Sept.	September 2007
Cramer, P. C., and J. A. Bissonette. 2006. Carnivore crossings and roads in North America: How are we doing? Carnivores 2006, St. Petersburg, Florida, 12-15 November 2006.	November 2006
Cramer, P. C., and J. A. Bissonette. 2005. Restoring permeability to the roaded landscape: Priorities for research. Paper presented at the US-IALE, Syracuse N.Y. 2005 14 March.	March 2005
Cramer, P. C., J. A. Bissonette, N. Newhouse, T. Kinley, S. Jacobson, K. Knapp, B. Persaud, C, Lyon and A. Clevenger. 2007. A wildlife crossing decision tool to mitigate transportation corridors for wildlife. Presentation to the Transportation Research Board Annual Meeting, Washington, D.C. January, 2007.	January 2007
Cramer, P. C. and J. A. Bissonette. Integrating Wildlife Crossings into Transportation Plans in Projects in North America. ICOET meeting, Little Rock, AR, 20-25 May 2007.	May 2007
Cramer, P. C. and J. A. Bissonette. 2006. Wildlife crossings in North America. Invited Presentation to Transportation Research Board Wildlife and Highways Workshop. Washington, D.C. January, 2006. url: http://refugedata.fws.gov/trb/2006Workshop/index.html.	January 2006
Cramer, P. C. and J. A. Bissonette. 2006. Wildlife and roads: The state of the science and practice. Invited presentation to the 2006 MNDOT Environmental Stewardship and Streamlining Workshop. Minneapolis, MN, March 2006.	March 2006
Cramer, P. C. and J. A. Bissonette. 2006. Priorities for research related to wildlife and roads. Transportation Research Board Wildlife and Highways Workshop. Washington, D.C. January, 2006.	January 2006
Cramer, P. C. and J. A. Bissonette. 2006. NCHRP 25-27 Update: Evaluation of the Use and Effectiveness of Wildlife Crossings in North America. Transportation Research Board Wildlife and Highways Workshop. Washington, D.C. January, 2006.	January 2006
Conner, M.M, P. Budy, D. Speas, P. MacKinnon, and M. M. McKinstry. 2019. Antennas antennas here and there, antennas antennas everywhere: Can they help us estimate population abundance of fish? Oral Presentation: American Fisheries Society and The Wildlife Society Joint Conference, Reno, Nevada, September 30-October 3, 2019.	October 2019	The proliferation of antennas for monitoring PIT-tagged (marked) fish has resulted in data sets wherein fish are encountered actively (physical captures) and passively. If the difference in encounter probability is not accounted for, abundance estimates may be biased. We used a simulation study to determine if these data can be combined to estimate abundance in closed-capture models using a suite of scenarios bracketing typical field sampling.
Coleman, T., P. Budy, J. DeRito T. Walsworth. 2024. Establishing a baseline to assess the impact of restoration actions reconnecting a Bear Lake tributary. Poster presentation. Joint Meeting: Utah State University Spring Runoff and Northern Utah Water Users. Navigating Utah's Water Challenges Through Interdisciplinary Partnerships. Logan. UT.	March 2024	Establishing baseline conditions and post-restoration standardized monitoring is critical to assessing the impact of restoration. In preparation for a planned culvert removal to reconnect upstream migration for cutthroat trout in North Eden Creek, a tributary of Bear Lake, we are characterizing the current fish community and habitat conditions, and designing a monitoring plan capable of determining long-term success of restoration.
Coleman, T., J. DeRito, C. Penne, G.P. Thiede, and P. Budy. 2020. Fishing success goes with the flow: correlation between stream flow and temperature and angler catch rates. Oral presentation. Annual Meeting of the Utah Chapter of the American Fisheries Society, St. George, Utah, 26-27 February 2020.	February 2020	This research has important findings and implications for future management of the fishery in the lower Logan River, Utah.
Clancy, NG, Issak, DJ, Budy, P, and Walters AW. 2022. Vulnerability of warm-, cool-, & cold-water fishes to stream warming Colorado/Wyoming Chapter of the American Fisheries Society Annual Meeting, Laramie, Wyoming, February 23 - March 3, 2022.	March 2022	Climate-induced temperature changes are less frequently considered with regards to cool-, and especially warm-water species. While future declines in species abundance and distribution are likely to depend on dispersal abilities, co-occurring species, and stream drying, this work demonstrates that vulnerability to stream warming is not limited to cold-water fishes.
Clancy, N.G, D.J. Isaak, P. Budy, A.W. Walters. 2022. Vulnerability of warm-, cool-, & cold-water fishes to stream warming. Joint Aquatic Sciences Meeting, Grand Rapids, Michigan, May 14-20. Oral Presentation.	May 2022	Significant declines in many cold-water species have been attributed to stream warming. While future declines in species abundance and distribution are likely to depend on dispersal abilities, co-occurring species, and stream drying, this work demonstrates that vulnerability to stream warming is not limited to cold-water fishes.
Clancy, N.G, D.J. Isaak, B. Maitland, P. Budy, A.W. Walters. 2022. Thermal refuges for climate vulnerable fishes in Montana. Montana AFS meeting.	February 2023	Stream warming is greatly affecting a large number of fishes, but most studies have focused on economically-valuable, cold-water species. While many warmwater fishes are expected to fare better in response to stream warming, increasing in abundance and distribution, that does not preclude other members of the guild from declining when stream temperatures exceed their thermal tolerances.
Chavez, M. J., P. Budy, and C. A. Pennock. 2022. Exploring movement patterns of an endangered minnow in a fragmented desert river. 54th Annual Meeting, Desert Fishes Council, St. George, UT, 16-20 November 2022. Oral Presentation.	November 2022	The overall goal of the study is to better understand the movement ecology of Rio Grande Silvery Minnow, and identify possible drivers of movement patterns. A greater understanding of how river fragmentation impacts the movement patterns of imperiled fishes can help guide and better inform the management of desert riverscapes to ultimately achieve self-sustaining populations of native fishes.
Chavez, M. J., P. Budy, and C. A. Pennock. 2022. Characterizing movement patterns of the endangered Rio Grande Silvery Minnow in a fragmented river. 153rd Annual Meeting of the American Fisheries Society, Spokane, WA, 21-25 August 2022. Oral Presentation.	August 2022	We describe and characterize movement patterns of federally endangered minnow. We identify drivers of Rio Grande Silvery Minnow movement patterns.
Chavez, M. J., P. Budy, and C. A. Pennock. 2022. Characterizing Rio Grande Silvery Minnow movement patterns. Utah American Fisheries Society Annual Meeting, Ogden, UT, 7-9 March 2022. Oral Presentation.	March 2022	We used Passive Integrated Transponder (PIT) tags in stocked Rio Grande Silvery Minnow with stationary and mobile antenna systems to detect and track movement patterns across time. Evidence of Rio Grande Silvery Minnow movement patterns may provide insights that could help target recovery efforts and ultimately aid in meeting management goals.
Chapman, K.C., P. Budy, F. Howe. 2014. Evaluating the potential impacts of American white pelican predation on Bonneville cutthroat trout in Strawberry Reservoir, Utah. Annual Meeting, Utah Chapter of the American Fisheries Society, Price, Utah, 11-13 March 2014	March 2014	This study examines the impact of bird predation on fish populations in a Utah reservoir. It will help determine the potential interactions between bird and fish populations and formulate management recommendations appropriate to the reservoir
Chapman, K.C., P. Budy, F. Howe. 2014. Evaluating the potential impacts of American white pelican predation on Bonneville cutthroat trout in Strawberry Reservoir, Utah. Annual Meeting, Utah Chapter of the American Fisheries Society, Moab, Utah, 26-28 March 2015	March 2015	This study examined the impact of pelican predation on a Utah fishery. This research will help inform bird and fish management practices for the reservoir.
Chapman, K.C., P. Budy and F. Howe. 2015. Evaluating the Potential Impacts of American White Pelican Predation on the Fishery in Strawberry Reservoir, Utah., Annual Meeting of the American Fisheries Society, National; Portland, Oregon, August 17-21, 2015	August 2015	Presentation of preliminary results for Master's project. Evaluating impacts of pelican predation on a fishery.
Budy. P. G.P. Thiede, K. Landom, and T.A. Crowl. 2010. Quantifying consumption by a nonnative piscivore assemblage: implications for recovery of the endangered June sucker. Invited Presentation ‘Sucker Summit’ Special Symposium, American Fisheries Society, Western Division, Salt Lake City, April 20-23, 2010.	April 2010
Budy. P. 2002. An overview of current research being conducted at the Utah Cooperative Fish and Wildlife Research Unit.	May 2002
Budy, P., S. Klobucar, L. Winters, D. Strohm, and G.P. Thiede. 2017. Crowded reservoir trophic niche space: likely influences of a warmer, drier climate? Invited Symposium: Resiliency and Vulnerability of Lentic Ecosystems and Communities to Climate Change and Multi-year Drought: What is known and what remains. Annual Meeting of the Western Division of the American Fisheries Society, 23 May, 2017, Missoula, MT.	May 2017	Resiliency and Vulnerability of Lentic Ecosystems and Communities to Climate Change and Multi-year Drought: What is known and what remains.
Budy, P., S. Klobucar, L. Winters, D. Strohm, and G.P. Thiede. 2016. Crowded reservoir trophic niche space under a warmer, drier climate. Annual Summer Meeting of the Association for the Sciences of Limnology and Oceanography, Santa Fe, NM, June 5-10, 2016.	June 2016	In managed reservoirs, species interactions within novel fish assemblages can be difficult to predict and dependent on physical factors influenced by climatic change (e.g., temperature regimes and reservoir elevation). Stocking decisions, with regard to species and numbers, will be most effective if contemporary reservoir dynamics are explicitly included.
Budy, P., R. Al-Chokhachy, and G. Thiede. 2003. Using PIT tag data to parameterize simple and elaborate mark/recapture models: tools for conservation and recovery planning. Invited presentation, Symposium. American Fisheries Society, Quebec, CAN.	August 2003
Budy, P., M.M. Conner, N.L. Slant, and W.W., Macfarlane. 2014. The Clock is Ticking for Desert Fishes of the SW USA: An Occupancy-based Assessment of Regional Vulnerability. American Fisheries Society, Western Division, April 7–11, 2014, Mazatlán, Mexico.	April 2014	Collectively, these results confirm that declines in these fishes were strongly associated with water development, and relative to their historic distribution, all ‘three species’ are at risk of local extinction. Using historical records, we provide an analytical approach that could be applied to other species of unknown status and that could be at risk of extinction, with the caveat that low rates of repeated site sampling limits the utility of some historical data.
Budy, P., M. Conner, N. Salant, and W. MacFarlane. 2012. Update on the occupancy based assessment of regional population status and vulnerability for three species of fish (bluehead sucker, flannelmouth sucker, and roundtail chub) in Utah: A template for assessing extinction risk and prioritizing conservation actions. Utah Chapter, American Fisheries Society, Annual Meeting, March 26-29, Bullfrog, UT.	March 2012
Budy, P., K.B. Rogers, Y. Kanno, B. Penaluna, N.P. Hitt. G.P. Thiede, J. Dunham, C. Mellison, W.L. Somer, and J. DeRito. 2019. Distribution and status of trout and char in North America. Salmonid Symposium 5, Granada, Spain, 20 - 24 May 2019.	May 2019	Despite their imperiled status and vulnerability to environmental threats, the outlook is promising for many species, subspecies, and populations of Pacific trout and char, largely because the most important limiting factors have been identified and because they are, in sum, a wildly celebrated, charismatic group of fishes.
Budy, P., J.S. McLaren, and S. Brothers, R. W. Van Kirk. 2023. The scale-dependent role of submerged macrophytes on trout habitat. Invited. Advances in the Population Ecology of Stream-dwelling Salmonids VI. Mallorca, Spain. 8 - 12 May 2023.	May 2023	Submerged macrophyte communities are prevalent in low-gradient rivers around the world. The net effect of submerged macrophytes on drift-feeding fish habitat is mixed. We found fish prefer microhabitats with deep water, low velocity, low submerged macrophyte coverage, and lower net rate of energy intake.
Budy, P., J. Lobon-Cervia, G. Ganzalez, L. A. Vollestad, G. P. Thiede, and E. Becares. 2008. A cross-continental, bioenergetic comparison of factors limiting the endemic and exotic distribution of brown trout under current and future environmental conditions. American Fisheries Society, Utah Chapter Annual Meeting, Moab, Utah, February 18-19, 2008.	August 2008
Budy, P., G.P. Thiede and N. Heredia and E. Horgen. 2022. Exploring the contemporary relationship between predator and prey in a culturally-important Lahontan Cutthroat Trout population in Pyramid Lake, Nevada. Invited. North American Congress for Conservation Biology, Lahontan Cutthroat Trout Conservation Special Symposium. Reno, NV, July 18-22, 2022.	July 2022	The population of LCT in Pyramid<br>Lake, Nevada has returned from the brink of extirpation, and although it is highly managed via stocking, the population<br>is thriving and has recently started to reproduce naturally. Given the conservation importance of this LCT population, careful monitoring is critical; however, “predation inertia” indicates that effective short-term management in response to fluctuations in forage fishes is likely<br>possible.<br>In
Budy, P., G.P. Thiede, and P. McHugh. Modeling the synergistic effects of physical factors, disease, and species interactions on the survival and status of endemic cutthroat trout. Ecological Society of America, National, Portland, OR. August 4, 2004.	August 2004
Budy, P., G.P. Thiede, and P. McHugh. 2005. Modeling the synergistic effects of physical factors, disease, and species interactions on the survival and status of endemic cutthroat trout. 11th Annual Whirling Disease Symposium, Denver, CO.	February 2005
Budy, P., G.P. Thiede, and P. McHugh. 2007. Evaluating the combined effects of environmental variation and biotic interactions on the abundance and distribution of exotic brown trout (Salmo trutta). American Fisheries Society, San Francisco, CA. September 1, 2007.	September 2007
Budy, P., G.P. Thiede, and P. McHugh. 2006. Quantification of survival, site-fidelity, abundance, and trend for a critical population of endemic cutthroat trout. AFS, Lake Placid, NY. September 1, 2006.	September 2006
Budy, P., G.P. Thiede, R. Shields, and T. Neebling. 2024. Warmwater and coldwater fish in two-story standing waters. Symposium: American Fisheries Society Book: Standard methods for sampling North American freshwater fishes II - Book Release. 9^th World Fisheries Congress, Seattle, Washington, 3-9, March, 2024.	March 2024	Two-story fisheries occur in lakes or reservoirs characterized by two distinct spatial strata, warmwater and coldwater. To effectively sample both strata and to integrate CPUE across gear types, additional considerations may be warranted.
Budy, P., G.P. Thiede, N. Bouwes, C. Petrosky, and H. Schaller. 2002. Linking earlier hydrosystem experience of endangered chinook salmon to mortality in the esturary and ocean.	May 2002
Budy, P., G.P. Thiede, D.A. Beauchamp, and Chris Luecke. 2012. Conflicts Between Native Fish Conservation and Non-Native Lake Trout Sport Fisheries: Historical Perspectives of Two Large, Natural Oligotrophic Lakes, Lake Tahoe and Bear Lake. Invited Presentation. American Fisheries Society, National Meeting, August 19-23, 2012, Minneapolis, MN.	August 2012
Budy, P., G.P. Thiede, D. Beauchamp, and C. Luecke. 2012. Conflicts between native fish conservation and non-native lake trout sport fisheries: historical perspectives of two large, natural oligotrophic lakes, Lake Tahoe and Bear Lake. Invited Symposium Presentation. American Fisheries Society, National Meeting, August 19-23, 2012, Minneapolis, MN.	August 2012
Budy, P., C. Pennock, and E. Adler. 2022. Indirect effects of climate change through thermokarst disturbance on Arctic lake biota. Oral Presentation, Joint Aquatic Science Meeting, Grand Rapids, MI, May 14-20.	May 2022	We coupled direct comparisons of a thermokarst-impacted lake to an unimpacted, reference lake (located on the N. side of the Brooks Mountains, AK) with longer term temporal data. In sum, the thermokarst disturbance had significant effects on water transparency and some lower trophic levels and profound predicted declines in fish foraging efficiency, which could translate into significantly lower grow and survival.
Budy, P., C. Luecke, and G.P. Thiede. 2011. Resources allocation among arctic char in closed arctic lakes: implications for population structure and regulation. Poster Presentation. American Fisheries Society, National Meeting, August 19-23, 2012, Minneapolis, MN.	August 2012	Resources allocation among arctic char in closed arctic lakes: implications for population structure and regulation.
Budy, P., C. A. Pennock, W. W. Macfarlane, M. J. Breen, J. Jimenez, and J.C. Schmidt. 2022. Native Fish Need a Natural Flow Regime, Not More Water Development. 54th Annual Meeting, Desert Fishes Council, St. George, UT, 16-20 November 2022.	November 2022	We discuss the importance of the natural flow regime for functioning riverine ecosystems and provide examples from four tributaries to the middle Green River, a major headwater branch of the Colorado River. Despite decades of intense management, endangered species continue to lack self-sustaining populations and other imperiled native species have been extirpated from over half their ranges, which begs the question of whether water development and fish conservation can be balanced?
Budy, P. and eight others. 2010. A mechanistic evaluation of brown trout performance across their native and exotic habitat: lessons for managing invasive trout. ‘Brown Trout in the West’ Special Symposium, Budy, Co-Chair, American Fisheries Society, Western Division, Salt Lake City, April 20, 2010.	April 2010
Budy, P. and eight others. 2010. A cross-continental, comparison of factors limiting the endemic and exotic distribution of brown trout: How can estimating bioenergetic efficiency inform management and conservation? Budy Program Chair and Convenor, International Symposium, Advances in the Population Ecology of Stream Salmonids, Luarca (Asturias, Spain), May, 17-21, 2010.	May 2010
Budy, P. and W.C. Saunders. 2015. Can high densities of native trout limit expansion of exotic trout through biotic resistance? International Symposium. Advances in the Population Ecology of Stream Salmonids IV. 25-29 May, Girona, Spain.	May 2015	Can high densities of native trout limit expansion of exotic trout through biotic resistance? International Symposium.
Budy, P. and N. Salant. 2011. Native fish population status and trends and opportunities for improvement on the Lower Dolores River: Phase I. Oral Presentation, San Juan Citizens Alliance, Lower Dolores River Working Group, Cortez, CO, April 6-7, 2011.	April 2011
Budy, P. and H. Schaller. 2005. Predicting the effects of freshwater restoration on the overall survival of salmon: how much is enough? American Fisheries Society, National Meeting, Anchorage, AK.	September 2005
Budy, P. and G.P. Thiede. A multi-faceted approach to understanding the relationship between Lahontan cutthroat trout and their prey in Pyramid Lake to guide a new adaptive management program. National American Fisheries Society, Reno, NV, 29 September – 03 October 2019.	October 2020	Lahontan cutthroat trout (LCT) Oncorhynchus clarkii henshawi are highly imperiled throughout their native range, yet currently are thriving in Pyramid Lake, NV. Effective management of this important sport fish relies on understanding their carrying capacity and management actions (stocking, harvest). We combined a large field sampling campaign, bioenergetics modeling, and a cohort analysis to explore the relationship between LCT and their primary prey source, tui chub Gila bicolor.
Budy, P. and G.P. Thiede. 2015. Why are we doing this and what are we learning: application and context for widespread PIT-tagging efforts in the Upper Colorado River Basin. Upper Colorado River Researchers Meeting. Moab, Utah. January 13-15, 2015.	January 2015	While the importance of mainstem rivers and major tributaries to endangered Colorado River fishes is well documented, the use and significance of small tributary streams remains poorly understood. Our findings demonstrate the importance of maintaining existing PIA and active-sampling programs and the use and the importance of small tributaries and their fragile habitats to imperiled fishes.
Budy, P. T. Walsworth, G.P. Thiede, P. Thompson, P. Holden, P. Chase, and W.C. Saunders. 2019. Remarkably rapid recovery of native cutthroat trout following removal of a dominant non-native brown trout sub-population: evidence of resilience and conservation potential. Advances in the Population Ecology of Stream Salmonids V, Symposium: Population dynamics of salmonids post ecological disturbance, May 20-24, Granda, Spain.	May 2019	While the importance of reducing the impacts of non-native species is increasingly recognized in conservation, the plausibility of such actions is highly dependent upon the stage of invasion and the size of the ecosystem being restored. As such, invasive species management actions face three questions regarding the ultimate success of the action; (1) will the removal efforts be successful (i.e., will invasive species remain absent), (2) will the native species respond positively to non-native s
Budy, P. G.P. Thiede, A. Giblin, A. Messenger, G. Kling, B. Crump, and N.R Christman. 2020. Evaluating the impact of a warmer climate on the aquatic ecology and fish of arctic lakes via thermokarst disturbance. Western Division, American Fisheries Society Conference, Vancouver, B.C. , Canada. April 13-16, 2020. The climate is changing faster in arctic Alaska than anywhere else on earth, and warming temperatures are having both direct and indirect effects on lakes and their biota.	April 2020	The climate is changing faster in arctic Alaska than anywhere else on earth, and warming temperatures are having both direct and indirect effects on lakes and their biota. In 2018 and 2019, a new thermokarst began contributing a large degree of sediment to one of our long term monitored Arctic lakes. Our results demonstrate thermokarsts can have significant impacts across several trophic levels; impacts will likely vary depending on the degree of community openness, a factor that may also be im
Budy, P. G.P. Thiede, A. Giblin, A. Messenger, G. Kling, B. Crump, and N.R Christman. 2020. Evaluating the impact of a warmer climate on the aquatic ecology and fish of arctic lakes via thermokarst disturbance. Western Division, American Fisheries Society Conference, Vancouver, B.C. , Canada. April 13-16, 2020. Cancelled for Corona 19 Virus.	April 2020	We used our long-term data and a fish visual foraging model to evaluate the impacts of this disturbance. Our results demonstrate thermokarsts can have significant impacts across several trophic levels; impacts will likely vary depending on the degree of community openness, a factor that may also be impacted by climate change.
Budy, P. G. P. Thiede, N. Bouwes, C. Petrosky, and H. Schaller. 2001. Linking earlier hydrosystem experience of endangered chinook salmon to mortality in the estuary and ocean. American Fisheries Society National Meeting, August 2001, Phoenix, Arizona.	August 2001
Budy, P. 2020. Understanding the direct and indirect effects of climate change and disturbance on arctic lake ecosystems. Invited Department Seminar, Department of Fish and Wildlife Sciences, University of Idaho. March 27, Moscow, ID. Cancelled for Corona 19 Virus.	March 2020	NA
Budy, P. 2000. Resolving differences between two alternative modeling approaches: The NMFS Leslie Matrix Model and the PATH Biological Decision Analysis. Congressional Briefing, Washington D.C. (March 2000).	March 2002
Budy, P. , A. Giblin, G. Kling, D. White, and C. Luecke. 2018. Understanding the indirect effects of climate change on pristine arctic lakes and char; delayed, multi-trophic level response to a long-term, low-level fertilization experiment. Oral Presentation. Annual Meeting of the Western Division of the American Fisheries Society, May 22-25, 2018, Anchorage, AK, USA.	May 2018	Indirect effects of warming include thermokarst failures and tundra wildfires, which act as pulse disturbances on lake ecosystems, delivering increased nutrients to oligotrophic lakes. Our results demonstrate the importance of long-term ecological research, as many ecosystems will require long time periods to respond to low-level pulse disturbance.
Budy, P. 2015. The Clock is Ticking; An Occupancy-based Assessment of Regional Vulnerability for Desert Fishes of the SW USA. Upper Colorado River Basin Water Forum, Grand Junction CO, 28-29 October 2015.	October 2015	Desert fishes are some of the most imperiled vertebrates worldwide due to their low economi worth and because they compete with humans forwater. Collectively, these results confirmed that declines in these fishes were strongly associated with water development and that relative to their historic distribution all 3 species have declined dramatically. Further, the chub was distinct in that it declined the most dramatically and therefore may need to be managed separately.
Budy, P. 2015. Effects of water withdrawal on populations of imperiled desert fishes; challenges to maintaining population persistence in intermittent streams. Invited Symposium Presentation, XI Conference of the Brazilian Association of Ichthyology, Recife, Brazil, February 2-8.	February 2015	The importance of this presentation is discuss the effects intermittent stream levels have on the populations of imperiled desert fishes.
Budy, P. 2014. Challenges to desert fish conservation and river restoration in the arid West: How can we avert the perfect storm? University of Missouri, Dept. of Fisheries and Wildlife Sciences. Invited Lecture: 5 March, 2014 Michael Dunmire Lecture Series.	March 2014	This study increases our understanding of the challenges facing desert fish in the arid West. The findings may help in restoration and conservation efforts.
Budy, P. 2014. Arctic Lakes: Spring 2014 update and new direction. Arctic Long Term Ecological Research, 25-28. February, 2014, Woods Hole, Massachusetts.	February 2014	This work adds understanding the future of Artic Lakes and ecosystems.
Budy, P. 2011. Towards a better understanding of the factors that limit and facilitate one of the world’s most invasive fishes: what can we learn from an intercontinental comparison? USU, Department of Watershed Sciences and Water Initiative Joint Seminar Series. February 24, 2011. Logan, UT.	February 2011
Budy, P. 2011. Evidence Linking Delayed Mortality of Snake River Salmon to Their Earlier Hydrosystem Experience. Comparative Survival Study Workshop, Invited Oral Presentation, July 26, 2011. Silverton, OR.	July 2011
Budy, P. 2008. Efecto de peces introducidos sobre las redes tr�ficas en embalses de Norteam�rica. (Food web interactions and the role of a new invader in a large reservoir in USA). Department Seminar, University of Leon, Dept. of Ecology, Spain. March 31, 2008.	March 2008
Budy, P. 2006. Evaluating the combined effects of environmental variation, biotic interactions, and disease on the abundance and distribution of exotic brown trout (Salmo trutta). Invited International Seminar, Ecology of stream fishes: State of the art and future prospects ? II. Leon, Spain.	June 2006
Bryce Roholt, Gary P. Thiede, Phaedra Budy. 2013. A morphometric determination of gape limit for six fish predators in three western USA waters. Western Division American Fisheries Society annual meeting April 15-18, 2013	April 2013	This study examined gape size in piscivorous fishes in western waters. This can provide an indicator of the size range of prey being consumed by predatory fish, and thus provide a better understanding of the effectiveness of different piscivores to control aquatic systems.
Brewerton, A.B., and T.C. Edwards, Jr. Response of shrubsteppe obligate passerines to post-wildland fire restoration treatments. Offered paper, 2012 Annual Meeting of the Wildlife Society Utah Chapter, Springdale, Utah, 3/22/2012.	March 2012
Brewerton, A.B., and T.C. Edwards, Jr. Avian response to post wildland fire reseeding treatments in Great Basin shrubsteppe. Offered paper, 18th Annual Conference of The Wildlife Society, Kona, Hawaii, 11/6/2011.	November 2011
Breen, M.J., G. P. Thiede, P. Budy, M. D. Fiorelli, S. Klobucar, and P. MacKinnon. 2014. Population demographics and habitat criteria for three sensitive fishes: why is the White River unique? American Fisheries Society, Utah Chapter, 11-14 March, 2014, Price, Utah, USA.	March 2014	This study helps to understand what makes the White River unique as a habitat for sensitive fish species.
Bowerman, T.B., P.E. Budy, H.A. Schaller. 2008. Use of predictive models to assess the importance of riverscape connectivity on the distribution of an imperiled fish species. American Fisheries Society Western Division Annual Meeting, Portland, Oregon, May 5, 2008.	May 2008
Bowerman, T.B., P.E. Budy, H.A. Schaller. 2008. Use of predictive models to assess the importance of riverscape connectivity on the distribution of an imperiled fish species. American Fisheries Society Utah Chapter Annual Meeting, Moab, Utah, February 27, 2008.	February 2008
Bowerman, T., P. Budy., and B.T. Neilson. 2011. Effects of substrate size, hyporheic flow, and spawning site selection on bull trout egg and alevin survival. Oral presentation, American Fisheries Society Annual Meeting, September 5-8, 2011. Seattle, WA.	September 2011
Bowerman, T., P. Budy. R. Al-Chokhachy, and H. Schaller. 2010. Patterns of bull trout movement and life history expression: what can we learn from multiple years and multiple sites using passive PIT-tag antennae? ‘Small river advances in PIT-tags…’ Special Symposium, Budy, Co-Chair, American Fisheries Society, Western Division, Salt Lake City, April 20-23, 2010.	April 2010
Bowerman, T., P. Budy, R. Al-Chokhachy, and H. Schaller. 2010. Patterns of bull trout movement and life history expression: What can we learn from multiple years and multiple sites using passive PIT-tag antennas? Presentation, American Fisheries Society, Western Division Annual Meeting, Salt Lake City, Utah.	April 2010	Movement patterns for fluvial bull trout are poorly understood but important for conservation planning. We describe temporal and life stage variations in movement patterns for juvenile and adult bull trout throughout >100 km of stream and over 8 years.
Bowerman, T., P. Budy, H. Schaller, D. Isaak. 2013. Potential demographic responses to climate change in bull trout populations of different spatial configurations and life-history strategies. Presentation, American Fisheries Society, Western Division, Boise, Idaho.	April 2013	Populations with different life-history strategies may respond differently to climate change and thus maintaining life-history diversity is important for buffering against the effects of climate change.
Bowerman, T., P. Budy, and B.T. Neilson. 2011. Effects of substrate size, hyporheic flow, and spawning site selection on bull trout egg and alevin survival. Presentation, American Fisheries Society annual meeting, Seattle, Washington	September 2011	Survival of bull trout embroys was negatively related to fine sediment and positively related to the magnitude of downwelling, demonstrating the importance of limiting fine sediment and maintaining hyporheic exchange in spawning habitat.
Bowerman, T. and P. Budy. 2011. How Do Habitat Connectivity and Dispersal Rates Affect Population Dynamics of an Imperiled Freshwater Fish? Poster presentation, Spring Runoff Conference, Logan, Utah, March 29-30, 2011.	March 2011
Bowerman, T. and P. Budy. 2010. How do habitat connectivity and dispersal rates affect population dynamics of an imperiled freshwater fish? Society for Conservation Biology, International Annual Meeting, Edmonton, Alberta, Canada.	July 2010	We found that habitat patch size was the single best predictor of bull trout occupancy. Using metapopulation modelling, we found that dispersal helped mitigate negative effects of environmental stochasticity on population abundance and probability of persistence.
Bowerman, T. and P. Budy. 2009. River engineers: Do spawning fish alter small-scale stream hydraulics? Presentation, Ecological Society of America, Annual Meeting, Albuquerque, New Mexico	August 2009	Bull trout and other salmonids effectively act as ecosystem engineers by altering intragravel conditions via redd creation. Spawning can alter hydraulic conductivity and dissolved oxygen through the shallow hyporheic zone.
Bouwes, N., P. Budy, C. Petrosky, and H. Schaller. 2001. An analysis of differential delayed mortality experience by chinook salmon of the Snake River. American Fisheries Society National Meeting, August 2001, Phoenix, Arizona.	August 2001
Botcher, J. and P. Budy. 2008. Habitat requirements, vital rates, and movement patterns of three endemic fishes in the San Rafael River, Utah. Utah American Fisheries Society, Moab, UT, Feburary 25, 2008. Best Student Poster Presentation Award ($250).	February 2008
Bolliger, J., T. Dalang, F.Kienast, and T. C. Edwards, Jr. Dry grassland meadows of high conservation priority: trade-offs between environmental risks and maintenance costs. Invited paper, 2009 Meeting of the European Chapter of the International Association for Landscape Ecology, Salzburg, Austria, 7/15/2009.	July 2009
Boettinger, J. L., G. A. Busch, B. B. Fonnesbeck, J. R Lawley, A. A. Croft, T. C. Edwards, Jr., and J. A. MacMahon. Elucidating soil-geomorphic relationships and soil properties associated with Arctomecon californica and Eriogonum corymbosum var. nilesii. Poster presented at the 94th Annual Meeting of the Ecological Society of America, Albuquerque, New Mexico, 8/5/09.	August 2009
Blythe, D.E. and P. Budy. How much water does the Rio Grande River need? The ecological consequences of an altered flow regime on an arid river. poster presented at: 48th Annual Meeting of Desert Fishes Council, Albuquerque, New Mexico, November 15th - 19th, 2016.	November 2016	Results will improve our understanding of the ecological function and integrity of the Rio Grande River. Further, we can assist the National Park Service in the maintenance and recovery of the native fish diversity for the Rio Grande River in the Big Bend Region.
Blythe, D.E. and P. Budy. 2018. How habitat complexity affects the native fish diversity and food web structure of the Rio Grande in Big Bend National Park, Texas, United States. Presentation. Utah Chapter Annual AFS Meeting, Ogden, Utah. March 13th -15th, 2018.	March 2018	Collectively, our results suggest the modern flow and sediment regimes may limit the availability of suitable or preferred habitat and food resources required for the sustained viability of native fishes within the Rio Grande
Blythe, D.E. and P. Budy. 2017. Make the Rio 'Grande' again: the ecological consequences of an altered flow regime on an arid river. Poster. Annual Spring Runoff Conference, March 28 -29, 2017. Logan, Utah.	March 2017	We are looking into how the altered flow and sediment regimes of the Rio Grande have impacted habitat complexity and associated native fish diversity.
Blythe, D.E. and P. Budy. 2017. Has an altered hydrologic regime changed ecosystem function and impacted the native fish biodiversity of the Rio Grande? Presentation. ESA Annual Meeting, August 7-11. Portland, OR.	August 2017	I am reconstructing the food web of the Rio Grande to understand how it may have been altered by the modern flow depletions and sediment regime for the river.
Bjurlin, C. D., and J. A. Bissonette. 2002. Desert tortoise nest site selection and embryogenisis in a changing environment . Wildlife Society Annual Western Section Meeting ,Visalia, CA. 7-9 March 2002.	March 2002
Bjurlin, C. D., and J. A. Bissonette. 2000. Ecological Society of America Annual Meeting, Snowbird, UT. Desert tortoise reproduction & survivorship: The influence of female size and abiotic factors on fecundity. 2000 ESA Annual Meeting, Snowbird, Utah.	August 2000
Bjurlin, C. D., J. A. Bissonette, and T. L. Cutler. 2000. Desert tortoise survivorship: Absence of evidence does not mean evidence of absence. (Poster - NMFWA Session) 65th North American Wildlife and Natural Resources Conference, Rosemont, Illinois, 29 March 2000	March 2000
Bissonette, John A., M. E. Lehnert And J. W. Haefner. 2000. Dead on the road: mitigative models to address deer highway mortality. Symposium: Wildlife and Highways: Seeking solutions to an ecological and socio-economic dilemma. TWS 2000 Annual Conference (7th Annual) Nashville, TN. 12-16 Sept. 2000.	September 2000
Bissonette, J. A., and P. C. Cramer. A decision tool for mitigating roads for Wildlife: The NCHRP 25-27 Project. Poster presented at the International Conference on Ecology and Transportation (ICOET), San Diego, 29 August-2 September 2005.	August 2005
Bissonette, J. A., and P. C. Cramer. 2007. North American Decision Guidelines for mitigating roads for wildlife. ICOET meeting, Little Rock, AR, 20-25 May 2007.	May 2007
Bissonette, J. A., M E. Lehnert, and M. Harrison. 2000. Lanes of destruction: effectiveness of highway right-of-way escape structures for mule deer. Symposium: Wildlife and Highways: Seeking solutions to an ecological and socio-economic dilemma. TWS 2000 Annual Conference (7th Annual) Nashville, TN. 12-16 Sept. 2000.	September 2000
Bissonette, J. A. Scaling roads and wildlife: the Cinderella Principle. 25th International Union of Game Biologists Congress, Lemesos, Cyprus. 1-5 September 2001.	September 2001
Bissonette, J. A. March 2000. Dead on the road: mule deer in a hostile environment. National Convention Mule Deer Foundation, Salt Lake City, UT.	March 2000
Bissonette, J. A. Concluding remarks. III International Martes Symposium: Martes in Managed Landscapes. Corner Brook, Newfoundland, Canada. 16 August 2000	August 2000
Bissonette, J. A. 2011. Understanding wildlife response to resources from a landscape perspective. Invited presentation at the Albert-Ludwigs University , Freiburg Germany 22 November 2011.	November 2011
Bissonette, J. A. 2011. Habitat pattern and animal response: Getting closer to reality. Presented at the 30th International Union of Game Biologists Congress 7 September, 2011.	September 2011
Bissonette, J. A. 2003. Understanding fragmentation: getting to 42. Third International Wildlife Management Congress, Christchurch New Zealand, 3 December 2003.	December 2003
Bissonette, J. A. 2003. Importance of distinguishing between spatial arrangement and habitat loss in fragmentation studies of wildlife species. Tenth Annual Conference of The Wildlife Society, Burlington, Vermont, 8 September 2003.	September 2003
Bissonette, J. A. 2003. Fragmentation: spatial arrangement or habitat amount: how can we decide relative importance for wildlife species. XXVI th International Union of Game Biologists Congress, Braga, Portugal, 1 September 2003.	September 2003
Bissonette, J. A. 2002. Invited paper. Wildlife Populations: Effects of the roaded landscape. Presented at the Transportation Research Board, 14 January 2002, Washington, D. C.	January 2002
Bissonette, J. A. 2001. The fragmentation of nature and the nature of fragmentation. Keynote address presented at the 6th Annual Meeting of the Portuguese Ecological Society, Lisbon, 1 November, 2001.	November 2001
Bissonette, J. A. 2001. Mule deer movement dynamics and roads: a crippled hierarchy. UT Chapter TWS/ AFS Ann. Meeting, 21-23 February, St. George, UT.	February 2001
Bissonette, J. A. 2000. Ecosystem health and surface transportation: reducing the virtual footprint. Invited presentation as part of the Ecosystem Health Panel Research Priorities Workshop, sponsored by the National Academy of Science' National Research Council, Washington D. C. 26 September 2000.	September 2000
Bingham, R. J., R. T. Larsen, J. A. Bissonette, and J. T. Flinders. 2009. Causes and consequences of ingested lead pellets in Chukars. Extended abstract in R. T. Watson, M. Fuller, M. Pokras, and W. G. Hunt, (Eds.). Ingestion of Lead from Spent Ammunition: Implications for Wildlife and Humans. The Peregrine Fund, Boise, Idaho, USA. DOI 10.4080/ilsa.2009.0204	May 2009
Barrett, N., S. Brothers, and P. Budy. 2018. Warming up the waters: Implications from individuals to ecosystems. Poster presentation at the Utah Chapter of the American Fisheries Society annual meeting, Ogden, Utah. 13-15 March 2018.	March 2018	These results highlight the potential effects of climatic warming on arctic fishes. Effects at the individual and ecosystem level and their connections are considered.
Barrett, N., S. Brothers, and P. Budy. 2018. Warming up the waters in Arctic lakes: Implications from individuals to ecosystems. Oral presentation at the Western Division of the American Fisheries Society annual meeting, Anchorage, AK. 21-25 May 2018.	May 2018	These results highlight the potential effects of climatic warming on arctic fishes. Effects at the individual and ecosystem level and their connections are considered.
Barrett, N., P. Budy. 2019. Supply and demand: Evaluating the independent and interactive effects of temperature & food availability on the performance of a mid-level consumer within arctic lakes. Oral Presentation: Annual Meeting of the Society for Freshwater Sciences, Salt Lake City, Utah, May 19-23 2019.	May 2019	this study investigates the independent and interactive effects of temperature and food availability on an important mid-level consumer within arctic lakes. Results suggest the importance in considering changes in food availability along with temperature in a changing climate.
Barrett, N., P. Budy. 2019. A Slimy Situation: Effects of temperature & food availability on the performance of Slimy Sculpin (Cottus cognatus), an important mid-level consumer in arctic lakes. Oral Presentation: Annual Meeting of the Utah Chapter of the American Fisheries Society, Provo, Utah, 12 – 14 March 2019.	March 2019	This study investigated the independent and interactive effects of temperature and resource availability on the performance of an important mid-level consumer in arctic lakes. Results suggest the importance in considering the interaction between temperature and food availability under a changing climate.
Barnes, S., P. Budy, and R. Al-Chokhachy. 2023. Potential Impacts of Large Terminal Lake Desiccation on a Critical Forage Fish. National Division of the American Fisheries Society, Grand Rapids, MI, August 20-24, 2023.	August 2023	We investigate the relative impacts of lake elevation decline resulting from anthropogenic water diversion on Tui Chub <i>Siphateles bicolor</i>, a forage fish critical to the Endangered Species Act Threatened Lahontan Cutthroat Trout <i>Oncorhynchus clarkii henshawi </i>in Pyramid Lake, NV. The unique fishery conserves important conservation species culturally and economically central for the Pyramid Lake Paiute Tribe on whose ancestral home the Lake resides.
Barnes, S., P. Budy, and R. Al-Chokhachy. 2023. Potential Consequences of Lake Elevation Decline on a Critical Forage Species in a Large Terminal Desert Lake. Western Division & Idaho Chapter American Fisheries Society, Boise, ID, May 8-11, 2023.	May 2023	Our research investigates the relative importance of lake level decline in Pyramid Lake on declining stocks of Tui Chub <i>Siphateles bicolor</i>, which is a keystone forage species for the unique Pyramid Lake ecosystem. This work will help agency and tribal managers steward the economically and culturally valuable Lahontan Cutthroat Trout <i>Oncorhynchus clarki henshawii</i> fishery as well as the globally significant migratory waterbird populations at the lake under an uncertain future.
Barnes, S., P. Budy, and R. Al-Chokhachy. 2022. Exploring Impacts of Lake Level Decline on a Critical Forage Species in a Large Terminal Desert Lake. 54th Annual Meeting, Desert Fishes Council, St. George, UT, 16-20 November 2022.	November 2022	Pyramid Lake supports a lucrative Lahontan Cutthroat Trout, <i>Oncorhynchus clarkii henshawi</i>, fishery for the Pyramid Lake Paiute Tribe. Lahontan Cutthroat Trout success relies primarily on their primary forage species the Tui Chub, <i>Siphateles bicolor</i>, and this work aims to understand if lake level decline may explain observed declines in <i>S. bicolor </i>to aid in future co-management of these highly linked species.
Ascensao, F., C. Grilo, J. A. Bissonette, and M. Santos-Reis. 2008. The role of landscape permeability for stone marten conservation: Patch occupancy and road mortality risk. Presented at the 23rd Annual Landscape Ecology Symposium, Madison Wisconsin, 6-10 April 2008.	April 2008
Arnold, T., S.L. Klobucar, G.P. Thiede, and P. Budy. 2017. Investigating morphometric differences across and among Arctic Char populations in lakes on the North Slope, Alaska. Poster presentation. Utah and Colorado-Wyoming Chapters Joint Annual Meeting of the American Fisheries Society. Grand Junction, CO, February 21 - 23, 2017.	February 2017	We use measurements of fish morphology to distinguish separate morphs (polymorphism) in inland lakes on the North Slope, Alaska, which is important to understand the persistence and future of these native fish populations.
Arnold, T., C. Penne, G.P. Thiede, and P. Budy. 2018. Determining age and size of fecund Walleye in Willard Bay, Utah using non-lethal dorsal spine analysis. Oral presentation at the Utah Chapter of the American Fisheries Society annual meeting, Ogden, Utah. 13-15 March 2018.	March 2018	Our age determinations will allow managers to assess year-class strength and likely causes including stocking effectiveness. This information provides important size and age information to managers hoping to continue and enhance this important warm-water fishery.
Al-Chokhachy, R., and P. Budy. 2003. Assessing bull trout population abundance and trends in the South Fork of the Walla Walla River, Oregon. American Fisheries Society, Quebec, CAN.	August 2003
Al-Chokhachy, R., and P. Budy. 2002. Bull trout assessment on the South Fork Walla Walla River, Oregon.	October 2002
Al-Chokhachy, R., P. Budy, and G.P. Thiede. Monitoring population trends and assessing limiting factors of aquatic species in decline: a bull trout case study. Ecological Society of America, National, Portland, OR. August 4, 2004.	August 2004
Al-Chokhachy, R., P. Budy, and G.P Thiede. 2007. The importance of Pacific salmon to resident salmonids in a changing environment. Oregon AFS, Eugene, OR. February 2007. Poster presentation.	February 2007
Al-Chokhachy, R., N. Bouwes, and M. Conner and P. Budy. 2008. Bias in salmonid survival rate?: capture-recapture models where multiple life-history forms coexist within a single population. American Fisheries Society, Western Chapter, Portland, Oregon Utah, May 4, 2008.	May 2008
Al-Chokhachy, R. and P. Budy. 2006. The importance of pacific salmon to resident fish populations in a changing environment. American Fisheries Society, National conference, Lake Placid, NY.	September 2006
Al-Chokhachy, R. and P. Budy. 2004. A hierarchical examination of bull trout habitat relationships in streams of northeast Oregon. Western Chapter of American Fisheries Society, Salt Lake City, UT. March 2, 2004	March 2004
Al-Chokhachy, R. and P. Budy. 2004. A hierarchical examination of bull trout habitat relationships in streams of northeast Oregon. Utah State University - Water Initiative: Spring Runoff Conference, Logan, UT.	March 2004
Al-Chokhachy, R. and P. Budy. 2007. Monitoring bull trout population trends using PIT-tags, passive instream antennae, and Pradel mark-recapture models. American Fisheries Society, Oregon Chapter Annual Meeting, Eugene, OR. February 28, 2007.	February 2007
Al-Chokhachy, R. and P. Budy. 2006. Using mark-recapture techniques to assess bull trout demographics and guide recovery efforts. Invited. Bull Trout Symposium at the American Fisheries Society, Western Division Meeting, Bozeman MT.	May 2006
Al-Chokhachy, R. , P. Budy, and M. Conner. 2005. Salmonid Conservation and Monitoring: Understanding the Accuracy and Costs of our Efforts. American Fisheries Society, National Meeting, Anchorage, AK.	September 2005
Aimee M. Van Tatenhove, Kyle G. Horton, Erica F. Stuber, Clark S. Rushing. Weather radar as a tool to quantify local airspace-use of a large migratory waterbird. Joint Meeting of the American Ornithological Society and BirdsCarribean. Puerto Rico, USA. 27 June 2022 - 2 July 2022.	June 2022	Study provides a proof of concept for identifying species-specific information extracted from weather radar data
Ahrens, Z., P. Budy, G. Thiede and D. Weedop. 2019. Unintended fragmentation: fish community impacts and conservation implications of the Piute Farms Waterfall, San Juan River, UT. Oral presentation: Annual Meeting of the Utah Chapter of the American Fisheries Society, Provo, Utah, 12 – 14 March 2018.	March 2019	This study examined the influence of a novel barrier on fish community composition, species interactions and population size structures in the San Juan River. The results will aide managers in decision-making regarding possible fish passage or barrier removal.
Ahrens, Z., P. Budy, G. Thiede and D. Weedop. 2019. Unintended fragmentation: fish community impacts and conservation implications of the Piute Farms Waterfall, San Juan River, UT. Oral presentation: Annual Meeting of the Utah Chapter of the American Fisheries Society, Provo, Utah, 12 – 14 March 2018.	March 2019	On the San Juan River, Utah, an anomalous anthropogenic waterfall poses a likely barrier to upstream movement both for ESA-listed migratory fish species and potentially invasive predatory sportfish from a downstream impoundment (Lake Powell). In this study, we aim to weigh the relative costs and benefits of altered connectivity resulting from this novel feature in the context of native fish conservation.
Adair, William A., and J. A. Bissonette. 2001. Spatially explicit models and landscape planning: a case study with the endangered Newfoundland marten (martes americana atrata). Third N. A. Forest Ecology Workshop, June 2001, Duluth, MN.	June 2001
Adair, William A., and J. A. Bissonette. 2001. Spatially explicit models and landscape planning: A case study with the endangered Newfoundland marten (Martes americana atrata). IALE, April 2001. Phoenix, AZ.	April 2001
Adair, William A., And John A. Bissonette. 2001. Spatially explicit models and landscape planning: A case study with the endangered Newfoundland marten (Martes americana atrata). TWS, 25-29 September 2001,Reno, NV.	September 2001
Adair, W.A., and J. A. Bissonette. 2009. Modeling spatial constraints limiting resource acquisition: A case study with the Newfoundland marten. Presented at the 5th International Martes Symposium, Seattle, WA. September 2009.	September 2009
Adair, W. A., and J. A. Bissonette. August 2000. Forecasting American marten habitat dynamics in western Newfoundland: A matter of finding the right crystal ball. III International Martes Symposium: Martes in Managed Landscapes. Corner Brook, Newfoundland, Canada.	August 2000
Adair, W. A., and J. A. Bissonette. 2006. Modeling spatial constraints limiting resource acquisition: A case study with the Newfoundland marten (Martes Americana atrata). 21st Annual Symposium US-IALE, San Diego, CA, 31 March.	March 2006
Adair, W. A., and J. A. Bissonette. 2001 Quantifying the effects of spatial configuration on habitat quality: A case study with the endangered Newfoundland marten (Martes americana atrata). ESA, 9 August 2001, Madison WI.	August 2001
Adair, W. A., J. A. Bissonette, and B. Hearn. August 2000. American marten den and resting-site characteristics in western Newfoundland. III International Martes Symposium: Martes in Managed Landscapes. Corner Brook, Newfoundland, Canada.	August 2000
A.L. Hayes-Puttfarcken, and E. Stuber. 2023. How does habitat quality affect avian occupancy and determine species resilience? Association of Field Ornithologists Annual Meeting. 1-4 August. Gramado, Brazil.	August 2023	Analysis of species' resilience to environmental change and exploration of whether species' traits explain resilience to change.
A. L. Hayes-Puttfarcken, R. Norvell, E. F. Stuber. 2022. Avian resilience to land-use change. Joint Meeting of the American Ornithological Society and BirdsCarribean. Puerto Rico, USA. 27 June 2022 - 2 July 2022.	July 2022	Demonstrates multi-species patterns of avian abundance/occupancy across gradients of habitat degradation in Utah.
_{Doden, E. Young, J.K., and Budy, P. 2020. Movements, fates, and activity patterns of resident and translocated beavers at desert restoration sites. Oral presentation. UT TWS annual meeting (cancelled due to COVID-19). Red Cliffs Lodge, Moab, UT.}	March 2020	Though beaver-assisted restoration is becoming more popular, outcomes are variable and standardized best practices for translocation are lacking, especially in arid systems. This talk compared space use, survival rates, and activity patterns of translocated and naturally occurring beavers in a desert system, concluding that more beavers need to be translocated to the study area to obtain establishment goals.
Miller, B. J., C. A. Pennock, and P. Budy. 2023. Wood you Believe it? Non-Native Wood Addition Enhances In-Stream Habitat for Native Desert Fishes. 2023 Annual Meeting, Colorado River Basis Researchers Meeting, Grand Junction CO, 31 Jan - 1 Feb 2023.	January 2023	Investigation of non-flow habitat enhancement for native fishes. Important for future habitat improvement in the face of diminishing watershed runoff and increasing water abstractin.
Budy, P., C.A. Pennock, W.W. Macfarlane, M.J. Breen, J. Jimenez, and J.C. Schmidt. 2022. Native Fish Need a Natural Flow Regime. Invited. Oral Presentation, RiversEdge West, 20^th Annual Conference, "Learn from the last 20 years and plan for the next". Hybrid: Grand Junction, CO.	February 2022	We discuss the importance of the natural flow regime for functioning riverine ecosystems and provide examples from four tributaries to the middle Green River, a major headwater branch of the Colorado River. Despite decades of intense management, endangered species continue to lack self-sustaining populations and other imperiled native species have been extirpated from over half their ranges, which begs the question of whether water development and fish conservation can be balanced?

Theses and Dissertations

Theses and Dissertations	Publication Date
Zarnetske, Phoebe L. 2006. Multiple species modelling: the management indicator species issue revisited. Master's Thesis, Utah State University, Logan, Utah.	May 2006
Wood, Jeremiah. 2008. An investigation of the early life-history of exotic brown trout (Salmo trutta) and potential influences on invasion success. MS Thesis. Utah State University, 48 pages.	July 2008
Winters, Lisa. 2014. An evaluation of the food web dynamics and predator prey interactions in Scofield Reservoir. MS Thesis. Ecology. Utah State University.	February 2014
Wilson, T. L. 2010. Effects of anthropogenic disturbance on habitat use of pygmy rabbits: the role of legacy effects. Ph.D. Dissertation, Utah State University	May 2010
White, H. 2011. Developing Riparian Bird Habitat Association Models and Management Guidelines. M. S. Thesis, Utah State University, Logan.	March 2011
West, R., G.P. Thiede, and P. Budy. 2020. Undergraduate Research. Diet overlap between two top predators in Pyramid Lake, Nevada. Poster presentation. To be presented at the Annual Meeting of the Utah Chapter of the American Fisheries Society, St. George, Utah, 26 – 27 February 2020.	February 2020
West, R. 2019. Undergraduate Research. Feeding ecology and diet overlap of coexisting lake trout and arctic grayling in two open and connected arctic lakes. Poster presentation: Utah Chapter of the American Fisheries Society meeting, March 12-14, Provo, UT.	March 2019
Weedop, D. 2019. Undergraduate Thesis Research. A spatial comparison of diets of predatory fishes above and below the Piute Farms Waterfall in the San Juan River, Utah. Poster presentation: Utah Chapter of the American Fisheries Society meeting, March 12-14, Provo, UT.	March 2019
Walsworth, Timothy. 2011. A patch approach to understanding the effect of stream degradation on food web and population structure of imperiled desert fishes. MS Thesis. Ecology, Utah State University.	September 2011
The Influence of Watershed Restoration Initiative Habitat Treatments on Mule Deer Relative Use and Fawn Production in Utah	December 2023
Tammy Wilson, M.S. 2005. Landscape dynamics of bird and small mammal communities in sagebrush-dominated mountain meadows in the Wasatch-Cache National Forest: Part of a hierarchical, multi-level study,	June 2005
Strohm, Deanna. 2015. Matching watershed and otolith microchemistry to establish natal origins of an endangered desert lake sucker. MS Thesis. Ecology. Utah State University.	May 2015
Stout, Benjamin. 2020. Improving our ability to estimate vital rates of endangered fishes on the San Juan River using novel applications of PIT tag technology. MS Thesis. Ecology. Utah State University.	April 2020
Sims, S. A. 2017. Modelling survival of a widely distributed ungulate as a factor of changing environments. MS, Utah State University.	May 2017
Silvia Rosa, M.S. 2006.Highway effects on small mammal communities and effectiveness of a deer-vehicle collision mitigation strategy.	December 2006
Seidel, Sara. 2009. Spawning ecology and early-life history of imperiled, endemic cutthroat trout. MS Thesis. Utah State University, 59 pages.	June 2009
Sandbach, Christine. 2023. Evaluating Beaver Translocation Methods for Desert River Restoration. MS Thesis. Summer 2023. Co-Advised with Dr. J. Young. https://digitalcommons.usu.edu/etd/8870	July 2023
Ripplinger, Julie. 2009. Legacy effects in sagebrush steppe: the key to understanding the future. M.S. Thesis, Utah State University, Logan, UT.	May 2010
Remiszewksi, T. 2022. Extreme, Positive Geomorphic Change in a Historically Degraded Desert River: Implications for Imperiled Fishes. M.S. Thesis, Utah State University, Logan, UT.	November 2022
Randy Larsen, Ph.D. 2008.A conceptual framework for understanding effects of wildlife water developments in the American southwest. (November 21, 2008)	November 2008
Norvell, R.E. 2008. Disturbance as restoration in the Intermountain sagebrush-steppe: effects on non-target bird species. Doctoral Dissertation, Utah State University, Logan, Utah.	May 2008
Newlon, Courtney. 2018. Identifying cues for movement and temporally-dynamic limiting factors in the bull trout movement corridor. MS Thesis. Ecology. Utah State University.	October 2018
Nadolski, Benjamin. 2008. Movement patterns and multi-scale factors that influence exotic brook trout distribution and abundance. MS Thesis. Utah State University, 79 pages.	June 2008
Moore, E. 2021. Characterizing land cover around Piñon jay nests at multiple spatial scales using remote sensing. MS, Utah State University.	July 2021
Mohn, Harrison. 2016. Improving management and conservation practices of Bonneville cutthroat trout (Onchorhynchus clarkii Utah) through an evaluation of movement and spatial population structure. Co-advised with Brett Roper. MS Thesis. Ecology. Utah State University.	May 2016
Meredith, Christy. 2012. Effects of a changing physical template on the longitudinal distribution of brown trout in a mountain stream: implications for brown trout invasion success. PhD. Ecology, Utah State University.	May 2012
McLaren, Jack. 2023. Managing development: evaluating the effect of nutrient enrichment on the Henry’s Fork River, Idaho. PhD Dissertation. Ecology. Utah State University. Co-Advised with Dr. S Brothers. Spring 2023.	January 2023
Maloney, Bryan C., "Evaluating Habitat-based Niche Requirements and Potential Recruitment Bottlenecks for Imperiled Bluehead Sucker (Catostomus discobolus)" (2017). All Graduate Theses and Dissertations. 6325. http://digitalcommons.usu.edu/etd/6325	April 2017
Lisa Nordstrom, Ph.D.2006. Tapirs and rhinoceroses in captivity: An examination of the North American captive populations and their husbandry.	December 2006
Klobucar, Stephen. 2018. The abiotic and biotic controls of arctic lake food webs: A multifaceted approach to quantifying Trophic structure and function. PhD Dissertation. Ecology. Utah State University.	August 2018
Klobucar, Stephen. 2013. An experimental and modeling approach to understanding predator-prey dynamics: identifying limitations of predator performance in high desert impoundments. MS Thesis. Ecology. Utah State University.	April 2013
Kilmer, J. 2019. Undergraduate Research. Estimating the abundance and distribution of slimy sculpin in an arctic lake using catch data and mark-recapture methods. Poster presentation: Utah Chapter of the American Fisheries Society meeting, March 12-14, Provo, UT. Applied and obtained USU - URCO funding and scholarship for this research project.	March 2019
Heredia, Nicholas. 2014. Food web ecology and energetics of Lahontan cutthroat trout in Pyramid Lake, Nevada: Return of the King? MS Thesis. Ecology. Utah State University.	September 2014
Gross, D. H. 2008. Mountain pine beetle fecundity and offspring size differ among lodgepole pine and whitebark pine hosts. Master's Thesis, Utah State University, Logan, Utah.	May 2008
Grob Nicole. 2020. Undergraduate Research. Are sculpin too slimy to count? An estimation of the abundance of Cottus cognatus in two arctic lakes. Poster presentation. Annual Meeting of the Utah Chapter of the American Fisheries Society, St. George, Utah, 26-27 February 2020.	February 2020
Gibson, Jacob. 2011. Individualistic responses of piñon and juniper distributions to projected climate change. M.S. Thesis, Utah State University	May 2011
Edwards, C.W. 2021. An Ensemble Modeling Approach to the Development of the Current Predicted Distribution of Southern Leatherside Chub Using Presence/Only Observations (Lepodomeda aliciae). MS, Utah State University.	May 2021
Dr. Miguel Rosalino, Ph.D. 2008.The role of mammals in the structure, function, and sustainability of ‘Montado” woodlands, a Mediterranean habitat. Post-Doctoral student (with Dr. Margarida Santos Reis, University of Lisbon).	October 2008
Doden, Emma. 2021. A comparison of the ecology of resident and translocated beavers used for passive restoration in degraded desert rivers. MS Thesis. Ecology. Utah State University. Co-Advised with Dr. J. Young.	November 2021
Do Didymosphenia geminata blooms affect fishes in the Kootenai River basin?	January 2020
Dean, Andy. 2014. An evaluation of the relative performance of diploid versus triploid brook trout with consideration of the influence of lake characteristics. MS Thesis. Ecology. Utah State University.	May 2014
Dahle, Kirk S. 2009. Understanding the abiotic and biotic factors that determine fish abundance and diversity along the gradient of a highly altered stream ecosystem. MS Thesis. Utah State University, 41 pages.	April 2009
DUSKY GROUSE POPULATION ECOLOGY AND THERMAL LANDSCAPE ECOLOGY IN THE GREAT BASIN ECOSYSTEM	December 2023
D.H. Weedop, G.P. Thiede, and P. Budy. 2020. Undergraduate Research. Beyond the lakes: fishes of streams in an open lake system. Poster presentation. Annual Meeting of the Utah Chapter of the American Fisheries Society, St. George, Utah, 26-27 February 2020.	March 2020
Coleman, T., J. DeRito, G.P. Thiede, and P. Budy. 2020. Undergraduate Research. Fishing success goes with the flow: correlation between stream flow and temperature and angler catch rates. Oral presentation. To be presented at the Annual Meeting of the Utah Chapter of the American Fisheries Society, St. George, Utah, 26-27 February 2020.	February 2020
Clara Bentes Grilo, Ph.D. 2009. Habitat connectivity for carnivores in Mediterranean landscapes: Implications for conservation planning. (Universidade de Lisboa, Faculdade de Ciências, Departamento de Biologia Animal, Co-advisor with Margarida Santos Reis)	July 2009
Carrie O’Brien. 2008 Terrestrial small mammals from the Gamba complex in Gabon: Sampling techniques, distribution patterns, and landscape factors. M.S. (December 12, 2008)	December 2008
Brewerton, Adam. 2012. Avian response to post wildland fire reseeding treatments in Great Basin shrubsteppe. M.S. Thesis, Utah State University.	May 2012
Bowerman, Tracy. 2013. A multi-scale investigation of factors limiting bull trout viability. PhD. Ecology. Utah State University.	May 2013
Botcher, Jared. 2009. Habitat needs, movement patterns, and vital rates of endemic fishes in the tributaries to the Green River, UT. MS Thesis. Utah State University, 61 pages.	October 2009
Blythe, Demi. 2018. Assessing the ecological implications of the altered flow and sediment regimes of the Rio Grande along the West Texas-Mexico border. MS Thesis. Ecology. Utah State University.	May 2018
Bingham, R. J. 2010. Causes and Consequences of Lead-pellet Ingestion by Chukars (Alectoris chukar) in Western Utah: Examining Soil, Search Images, and Toxicology, M.S. thesis, Utah State University, Logan UT.	October 2010
Ahrens, Zachery. 2023. Ecological effects and fishery conservation implications of a quasi-natural fish barrier on the Lower San Juan River, Utah. MS Thesis. Ecology. Utah State University. Spring 2023.	May 2023
E. Johnson, M.S. 2005. Bird and small mammal communities of sagebrush-dominated mountain meadows: An examination of meadow characteristics as part of a hierarchical, multi-level study of the Wasatch-Cache National Forest.	June 2005
C. A. Kassar, M.S. 2005. Wildlife vehicle collisions in Utah: An analysis of wildlife road mortality hotspots, economic impacts, and implications for mitigation and management.	April 2005

Technical Publications

Technical Publications	Publication Date
Zakrajsek, E. J., and J. A. Bissonette. 2001. Nocturnal bird-avoidance modeling with mobil-marine radar. Bird Strike 2001 185-194.	March 2001
Zakrajsek, E. J., and J. A. Bissonette. 2001. Development of a bird-avoidance model for Naval Air Facility El Centro, California. Project Report No. 5. USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan Utah. 2001(5):1-81.	October 2001
Wright, E., G.P. Thiede, and P. Budy. 2016. Determining long-term trends in trout populations using standard stream electrofishing methods: Is the extra pass worth it? Poster presentation. Utah Chapter, American Fisheries Society Meeting, March 2016, Altamont, UT.	March 2016
Walsworth, T.E., Budy, P., Keller, D., and Jimenez, J. 2019. UCRB Innovative and Science-based Desert Tributaries Restoration: Price River Initiative. Project Report to the Desert Fish Habitat Partnership.	July 2019
Walsworth, T.E. and Budy, P. 2020. DRAFT: Hydrologic control on abundance and dsitribution of the endangered Rio Grande silvery minnow in the Middle Rio Grande. USGS Utah Cooperative Fish and Wildlife Research Unit Report. 2020: 1-35.	January 2020
U.S. Fish and Wildlife Service. 2020. Final Report: Bald Eagle Population Size: 2020 Update. U.S. Fish and Wildlife Service, Division of Migratory Bird Management, Washington, D.C. U.S.A.	March 2021
Toth, R.E., T. C. Edwards, Jr., A. L. Perschon, and D. C. White. 2010. Bear River Watershed: its role in maintaining the Bear River Migratory Bird Refuge. Final Project Report No. 2010-1, U.S. Geological Survey, Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan, Utah 84322-5290.	January 2010
Toth, R. E., T. C. Edwards, Jr., R. J. Lilieholm, and L. M. Hunter. 2002. The development of alternative future growth scenarios for the California Mojave Desert. Final Project Report No. 2002-1, USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan, UT 843232-5290 USA.	June 2002
Toth, R. E., T. C. Edwards, Jr., R. J. Lilieholm, D. A. Bell, and E. R. Buteau. 2002. Alternative Futures for Utah's Wasatch Front: bioregional planning for the maintenance and conservation of open space. Final Project Report No. 2002-2, USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan, UT 843232-5290 USA.	August 2002
Toth, R. E., Edwards, T. C., Jr., B. Crabb, J. Gibson, L. Hurst, N. Kenczka, L. Vander Wal, A. Kjar, and E. L. McGinty. 2008. Upper Colorado River Ecosystem: Alternative Futures Study Phase I. Project Report No. 2008-1, USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan, UT 84322-5290 USA.	June 2008
Stout, J.B., M. Conner, P. Budy, P. MacKinnon, and M. McKinstry. 2016. Improving our ability to estimate vital rates of endangered fishes on the San Juan River using novel applications of PIT tag technology. American Fisheries Society, Utah Chapter, March 17, 2016, Altamont, UT.	March 2016
Stout, J.B., M. Conner, P. Budy, M. McKinstry, and P. MacKinnon. 2016. How do we use portable PIT tag antenna data? 37th Annual Researcher’s Meeting of the Upper Colorado River Endangered Fish Recovery Program and the San Juan River Basin Recovery Implementation Program. January 12, 2016, Durango, CO.	January 2016
Simmons, L., S. Klobucar, and P. Budy. 2016. Big fish in a small pond or small fish in a small pond? Investigating arctic char dimorphism with consideration of predator-prey interactions. Utah Chapter, American Fisheries Society Meeting, March 2016, Altamont, UT.	March 2016
Saunders, W.C., and P. Budy. 2012. Population Dynamics of Exotic Brown Trout Salmo trutta and Biotic Resistance by Bonneville Cutthroat Trout Oncorhynchus clarkii utah in an Intermountain West (USA), High-Elevation Stream. 2010 Annual Report to Utah Division of Wildlife Resources. Utah Blue Ribbon Fisheries Advisory Council: Project #1820 & #2003. UTCFWRU 2012(2):1-59	June 2012
Saunders, W.C., P. Budy, and G.P. Thiede. 2011. Evaluation of demographic change following two years of mechanical removal of exotic brown trout Salmo trutta in the Logan River, Utah. 2010 Annual Report to Utah Division of Wildlife Resources. Endangered Species Mitigation Fund, Project # 1111. UTCFWRU 2011(4):1-28.	March 2011
Saunders, C., S. Klobucar, and P. Budy. 2014. Food web effects, seasonal movements, and spawning ecology of Burbot, a large invasive piscivore, in Flaming Gorge Reservoir, Utah and Wyoming. Project Completion Report to Utah Division of Wildlife Resources. Sportfish Research: Project ID 121041. UTCFWRU 2014(3):1-57. USGS FSP: IP-058204.	June 2014
Saunders, C., G. Thiede, S. Klobucar, and P. Budy. 2013. Hydroacoustic assessment of fish density and abundance in Strawberry Reservoir, Utah. 2013 Annual Report to Utah Division of Wildlife Resources. Watershed Restoration Initiative: Project ID 2328. UTCFWRU 2013(5):1-17.	May 2013
Sales-Louis, T., J. A. Bissonette, and M. Santos-Reis. 2008 Importance of pre-classifying river stretches for otter abundance sampling. Tenth International Otter Colloquium Proceedings. http://www.otterspecialistgroup.org/Bulletin/IUCNOSGBull.html	August 2008
Salant, N.L., Schmidt, J.C., Wilcock, P.R., and Budy, P.E. 2010. Geomorphic History and Current Channel Condition of the Donner und Blitzen River, Malheur National Wildlife Refuge, Oregon. Report submitted to the U.S. Fish and Wildlife Service (Cooperative Agreement No. 10190-9-J001), Portland, Oregon. April, 2010. ICRRR 2010(2):1-82.	May 2010
Rosa, S., and J. A. Bissonette. 2007. Evaluation of underpass effectiveness on the Wildcat Highway and Salina Canyon improvement projects: Interstate highways I-15 and I-70, southern Utah. Prepared for the Bureau of Land Management, Utah Department of Transportation, and the Utah Division of Wildlife Resources. 33 pages.	May 2007
Rastetter. E., Bowden, W., Budy, P., Giblin, A. and Kling, G. 2019. Annual Report to National Science Foundation: Arctic LTER: The Role of Biogeochemical and Community Openness in Governing Arctic Ecosystem Response to Climate Change and Disturbance.	February 2019
Pennock, C. A., W. W. Macfarlane, P. Budy, J. Jimenez, and J. Goodell. 2021. Conservation, restoration and monitoring plan for the lower White River, Utah. UTCFWRU 2022(1):1-78.	January 2022
Miller, S.W., N.L. Salant, P. Budy, J.C. Schmidt. 2010. Assessing responses of Bonneville cutthroat trout to restoration strategies implemented under the 1997 Conservation Agreement. 2009 Annual Report. Endangered Species Mitigation Fund Project Number: 0809. ICRRR 2009(1).	March 2010
McLaren, J., Budy, P., Van Kirk, R., Mabaka, A.J. 2021. Drought and drawdown create a house of horrors: shrinking habitat potentially impacts fish populations in a river-reservoir system in Idaho. NALMS LakeLine Magazine 41(3). https://www.nalms.org/lakeline-magazine/	October 2021
McHugh, P., and P. Budy. 2002. Snake River spring/summer chinook habitat improvement feasibility and validation study. Annual Progress Report to US Fish and Wildlife Service. 104 pages.	May 2003
McHugh, P., and P. Budy. 2002. A model-based approach to assessing the potential response of chinook salmon to habitat improvements. Project Report No. 6. Cooperative Fish and Wildlife Research Unit, Utah State University, Logan Utah. UCFWRU 2001(6):1-137.	December 2001
McClure, M. F. , J. A. Bissonette, and M. R. Conover. 2001. Urban deer investigations: ecological research for management solutions. Project Report No. 3. USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan Utah. 2001(3):1-23.	October 2001
Marmorek, D. R., M. Porter, I. J. Parnell and C. Peters, eds. 2004. Comparative Survival Study Workshop, February 11-13, 2004; Bonneville Hot Springs Resort. P. Budy and 17 others. Report compiled and edited by ESSA Technologies Ltd., Vancouver, B.C. for Fish Passage Center, Portland, OR and the US Fish and Wildlife Service, Vancouver, WA. 137 pp.	March 2004
Maloney, B., J. Gaeta, and P. Budy. 2016. Evaluating habitat-based niche requirements for the bluehead sucker (Catostomus discobolus): can we identify the cause of a recruitment bottleneck? American Fisheries Society, Utah Chapter, March 17, 2016, Altamont, UT.	March 2016
MacMahon, J. A., R. E. Toth, J. L. Boettinger, G. Busch, T. C. Edwards, Jr., R. S. Krannich, A. Croft, B. Jennings, and E. Leydsman. Upper Las Vegas Wash Conservation Transfer Area: A system to develop alternatve scenarios. Final Project Report No. 2009-2, USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan, UT 84322-5290 USA.	June 2009
Lucas, H., B. Maloney, G.P. Thiede, and P. Budy. 2016. Ageing and growth of bluehead sucker in the Weber River, Utah. Poster presentation. Utah Chapter, American Fisheries Society Meeting, March 2016, Altamont, UT.	March 2016
Laub, B. G., J. Jimenez, and P. Budy. 2016. An experimental habitat enhancement effort for desert rivers: San Rafael River restoration project. Tamarisk Coalition Meeting, February 9, 2016, Grand Junction, CO.	February 2016
Laub, B. G., J. Jimenez, and P. Budy. 2016. An experimental habitat enhancement effort for Utah's desert rivers: San Rafael River restoration project. American Fisheries Society, Utah Chapter, March 17, 2016, Altamont, UT.	March 2016
Klobucar, S.L., and P. Budy. 2016. Consequences of seasonal variation in reservoir water level for predatory fishes: linking visual foraging and prey densities. Invited Presentation, Sympoisum “water Regulation and Reservoir Management in a context of global climate change”. Annual Summer Meeting of the Association for the Sciences of Limnology and Oceanography, June 6, 2016, Santa Fe, NM.	June 2016
Klobucar, S.L., J.W. Gaeta and P. Budy. 2016. A changing menu in a changing climate? Predicting the availability of fish food in warmer arctic lakes. Annual Meeting of the Western Division of the American Fisheries Society, March 22, 2016, Reno, NV.	March 2016
Kassar, C., and J. A. Bissonette. 2005. Deer-vehicle crash hotspots in Utah: Data for effective mitigation. UTCFWRU Project Report No. 2005(1):1-128. Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan Utah. (found on the following website: http://www.cnr.usu.edu/faculty/jbissonette/index.htm)	April 2005
Johnson, J. A., B. A. Andres, and J. A. Bissonette. In Press. Distribution, abundance, and habitat associations of birds during the breeding season at major mainland rivers of southeastern Alaska. USFWS Report Series publication. (Accepted September 2006)	September 2006
Hurst, L. A., R. E. Toth, T. C. Edwards, Jr.. 2009. Alternative Futures 2030: Ogden Vallye, Utah. Final Project Report No. 2009-1, USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan, UT 84322-5290 USA.	June 2009
Hafen, T., G.P. Thiede, and P. Budy. 2016. Temporal and spatial variation in diets of mottled sculpin in the Logan River, Utah. Poster presentation. Utah Chapter, American Fisheries Society Meeting, March 2016, Altamont, UT.	March 2016
Gresswell, Robert E. and 13 others. 2009. Scientific Review Panel Evaluation of the National Park Service Lake Trout Suppression Program in Yellowstone Lake, August 25th–29th. Final Report. USGS Northern Rocky Mountain Science Center, Bozeman, Montana. YCR–2009–05.	December 2009
Gresswell, R.E., P. Budy, C. S. Guy, M. J. Hansen, M. L. Jones, P. J. Martinez, C. Suski, J. E. Williams. 2012. Confronting a lake trout invasion of Yellowstone Lake: An interim scientific assessment, June 14–16, 2011. A Report to the Superintendent of Yellowstone National Park. U.S. Geological Survey, Northern Rocky Mountain Science Center, Bozeman, Montana. YCR-2012-04.	June 2011
Frescino, T. S., G. G. Moisen, and T. C. Edwards, Jr. 2000. Development and use of Forest Inventory and Analysis (FIA) map products. In Remote Sensing and Geospatial Technologies for the New Millennium: Proceedings of the 8th Biennial Remote Sensing Applications Conference, CD-ROM, Mira CD-ROM Publishing, cdsupport@miracd.com.	August 2000
Edwards, T. C., Jr., and P. L. Zarnetske. 2006. Habitat modelling of management indicator species on forest lands in the Intermountain West: a role for the Forest Service Forest Inventory and Analysis data. Final Project Report No. 2006-5, USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan, UT 84322-5290 USA.	October 2006
Edwards, T. C., Jr., and D. R. Cutler. 2003. Abundance and association analyses of survey and manage bryophyte data from the pilot random grid surveys. Final Project Report No. 2003-2, USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan, UT 843232-5290 USA.	August 2003
Edwards, T. C., Jr., R. E. Toth, R. J. Lilieholm, D. A. Bell, and E. R. Buteau. 2004. Alternative future growth scenarios for conserving open space along Utah's Wasatch Front: a case study for the Mountainland Association of Governments. Final Project Report No. 2004-1, USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan, UT 843232-5290 USA.	October 2004
Edwards, T. C., Jr., F. P. Howe, R. E. Norvell, T. L. Wilson, J. Ripplinger, and J. Gibson. Disturbance as a management tool: effects on selected wildlife species in Rich County, Utah. Final Project Report No. 2009-3, USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan, UT 84322-5290 USA.	June 2009
Edwards, T. C., Jr., D. R. Cutler, K. H. Beard, and J. Gibson. 2007. Predicting invasive plant species occurrences in national parks: a process for prioritizing prevention. Final Project Report No. 2007-1, USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan, UT 84322-5290 USA.	October 2007
Edwards, T. C., Jr., Cutler, D. R., J. Alegria, L. Geiser, and D. McKenzie. 2001. Analysis techniques for survey and manage data: an illustrative example using the lichen air quality surveys. Technical Report No. 4, Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan, Utah.	September 2001
Dorathy, J., G.P. Thiede, and P. Budy. 2016. Two is better than one: using multiple methods to improve mottled sculpin density estimates in the Logan River, Utah. Poster presentation. Utah Chapter, American Fisheries Society Meeting, March 2016, Altamont, UT.	March 2016
Doden, E. Budy, P., Young, J.K. 2019. Beaver re-introduction - Passive desert river restoration. Performance Report for the period January 1, 2019 to December 1, 2019 to the Bureau of Land Management. Agreement number L18AC00121.	December 2019
Cutler, D. R., T. C. Edwards, Jr., J. Alegria, D. McKenzie, and A. Cangelosi. 2003. Abundance and association analyses for the GOBIG2K mollusk and amphibian survey. Final Project Report No. 2003-1, USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan, UT 843232-5290 USA.	August 2003
Cramer, P., S. Rosa, and J. A. Bissonette. 2006. Condition of Highway 91 Wildlife Underpasses, Escape Ramps, and Fencing in Sardine Canyon, Wellsville Mountains, Utah, Winter 2006. Project Report No. 1. USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan Utah. 2006(1):1-20.	May 2006
Cramer, P. and J. A. Bissonette 2009. Transportation ecology and wildlife passages: The state of the practice and science of making roads better for wildlife. In Press Transportation News 262:12-19 (May-June 2009)	August 2009
Bunnell, K. D., J. J. Shirley, J. T. Flinders, M. L. Wolfe, and J. A. Bissonette. 2004. Forest carnivores occurrence, distribution and limiting factors: Canada Lynx and wolverine surveys in Utah. Final Report to Utah Division of Wildlife Resources, U. S. Forest Service, and U. S. Fish and Wildlife Service. 113 pp.	August 2004
Budy. P. 2016. Towards a better understanding of factors that limit and facilitate one of the world's most invasive fishes. Invited Department Seminar, University of Wyoming, February 19, 2016, Laramie, WY.	February 2016
Budy, P., and G. P. Thiede. 2020. Pyramid Lake Lahontan cutthroat trout and tui chub monitoring and evaluation. Annual Monitoring Report to USFWS Lahontan National Fish Hatchery Complex, Reno, Nevada. December 2020. UTCFWRU 2020 (3):1-40.	December 2020
Budy, P., T. Walsworth, and G.P. Thiede. 2010. Habitat needs, movement patterns, and vital rates of endemic Utah fishes in a tributary to the Green River, Utah. 2009 Annual Report to the Bureau of Reclamation, Upper Colorado Region. UTCFWRU 2010(1):1-45.	May 2010
Budy, P., T. Haddix, and G.P. Thiede. 2002. Rainbow trout growth and survival in Flaming Gorge Reservoir. Project XIV, Annual Report to Utah Division of Wildlife Resources. 61 pages.	March 2003
Budy, P., T. Bowerman, and G.P. Thiede. 2010. Bull trout population assessment in northeastern Oregon: a template for recovery planning. 2009 Annual Progress Report to US Fish and Wildlife Service. UTCFWRU 2010(3):1-48.	September 2010
Budy, P., S. Vatland, and G.P. Thiede. 2004. Lake Powell food web dynamics. Annual Report to Utah Division of Wildlife Resources. Project XIV. Grant Number F-47-R. Salt Lake City, Utah. 88 pages.	March 2005
Budy, P., S. Vatland, and G.P. Thiede. 2003. Lake Powell food web dynamics. Annual Reports to Utah Division of Wildlife Resources. Project XIV. Grant Number F-47-R. Salt Lake City, Utah.	March 2004
Budy, P., S. McKay, and G.P. Thiede. 2012. Weber River metapopulation and source-sink dynamics of native and endemic fishes. 2011 Progress Report to Utah Division of Wildlife Resources. Sport Fisheries Research, Grant Number: F-135-R, Section 1. UTCFWRU 2012(4):1-20.	May 2012
Budy, P., S. Klobucar, L. Winters, D. Strohm, and G.P. Thiede. 2016. Crowded reservoir trophic niche space under a warmer, drier climate. Invited Presentation, Sympoisum “water Regulation and Reservoir Management in a context of global climate change”. Annual Summer Meeting of the Association for the Sciences of Limnology and Oceanography, Santa Fe, NM, June 5-10, 2016.	June 2016
Budy, P., R. Al-Chokhachy, and G.P. Thiede. 2007. Bull trout population assessment in northeastern Oregon: a template for recovery planning. 2006 Annual Progress Report to the US Fish and Wildlife Service. UTCFWRU 2007(1):1-83.	April 2007
Budy, P., R. Al-Chokhachy, and G.P. Thiede. 2004. Bull trout population assessment and life-history characteristics in association with habitat quality and land use in the Walla Walla River Basin: a template for recovery planning. 2003 Annual Progress Report to US Fish and Wildlife Service. 70 pages.	May 2005
Budy, P., R. Al-Chokhachy, and G.P. Thiede. 2003. Bull trout population assessment and life-history characteristics in association with habitat quality and land use in the Walla Wall River Basin: a template for recovery planning. 2002 Annual Progress Report to US Fish and Wildlife Service. 41 pages.	May 2003
Budy, P., R. Al-Chokhachy, K. Homel, and G.P. Thiede. 2006. Bull trout population assessment and life-history characteristics in association with habitat quality and land use in the Walla Walla River Basin: a template for recovery planning. 2005 Annual Progress Report to US Fish and Wildlife Service.	May 2006
Budy, P., P.D. MacKinnon, T. Bowerman, and G.P. Thiede. 2009. Bull trout population assessment in northeastern Oregon: a template for recovery planning. 2008 Annual Progress Report to US Fish and Wildlife Service. UTCFWRU 2009(1):1-57.	May 2009
Budy, P., P. McHugh, E. Hansen, and G.P. Thiede. 2006. Logan River study: factors affecting trout population dynamics, abundance, and distribution in the Logan River, Utah. Project XIII, 2005 Annual Report to Utah Division of Wildlife Resources.	April 2006
Budy, P., P. McHugh, E. Hansen, J. Wood, and G.P. Thiede. 2007. Logan River whirling disease study: factors affecting trout population dynamics, abundance, and distribution in the Logan River, Utah. Grant Number XIII. Project F-47-R. 2006 Annual Report to Utah Division of Wildlife Resources. UCFWRU 2007(2):1-46 pages.	June 2007
Budy, P., P. McHugh , and G.P. Thiede. 2004. Logan River study: factors affecting trout population dynamics, abundance, and distribution in the Logan River, Utah. Project XIII, Annual Report to Utah Division of Wildlife Resources. 63 pages.	March 2005
Budy, P., P. MacKinnon, T. Bowerman, and G.P. Thiede. 2008. Bull trout population assessment in northeastern Oregon: a template for recovery planning. 2007 Annual Progress Report to the US Fish and Wildlife Service. UTCFWRU 2007(4):1-73.	June 2008
Budy, P., N. Heredia, G.P. Thiede, and B. Laub. 2014. Pyramid Lake fishery evaluation: evaluating cutthroat trout performance and identifying limiting factors for the native fish community. Progress Report to US Fish and Wildlife Service, Lahontan National Fish Hatchery Complex, Great Basin Cooperative Agreement. UTCFWRU 2014(6):1-89. USGS FSP IP-066465.	October 2014
Budy, P., N. Heredia, G.P. Thiede, and B. Laub. 2014. Pyramid Lake fishery evaluation: evaluating cutthroat trout performance and identifying limiting factors for the native fish community. Progress Report to US Fish and Wildlife Service, Lahontan National Fish Hatchery Complex, Great Basin Cooperative Agreement. UTCFWRU 2014(6):1-89.	July 2014
Budy, P., M.J. Chavez, C. Pennock, G.P. Thiede, and Peter MacKinnon. 2021. Rio Grande Silvery Minnow movement dynamics in the Middle Rio Grande. Annual Report to the U.S. Bureau of Reclamation, Albuquerque Area Office. UCFWRU 2021(1):1-30.	June 2021
Budy, P., M. M. Conner, N.L. Salant, and W. Macfarlane. 2013. Occupancy-Based Assessment of Regional Vulnerability of Endemic Desert Fishes: A Template for Conservation Actions. Conservation Biology. UCFWRU 2013:1-37.	June 2013
Budy, P., L.B. Tennant, T. Bowerman, and G.P. Thiede. 2011. Bull trout population assessment in northeastern Oregon: a template for recovery planning. 2010. Annual Progress Report to US Fish and Wildlife Service. UCFWRU 2011:1-88.	August 2011
Budy, P., L. Winters, and G.P. Thiede. 2012. An investigation of the potential roles of interspecific interactions and forage availability on the performance of three predatory fishes. Draft 2011 Progress Report to the Utah Division of Wildlife Resources. UTCFWRU 2012(3):1-42.	March 2012
Budy, P., L. Winters, G.P. Thiede, K. Hafen, and B. Roholt. 2014. Scofield Reservoir predator-prey interactions: investigating the roles of interspecific interactions and forage availability on the performance of three predatory fishes. 2013 Project Completion Report to the Utah Division of Wildlife Resources. UTCFWRU 2014(2):1-123. USGS FSP IP-065178 & USGS IP-074773.	May 2014
Budy, P., K. Dahle, and G.P. Thiede. 2007. An evaluation of the fish community of Cutler Reservoir and the Bear River above the reservoir with consideration of the potential for future fisheries enhancement. 2006 Annual Report to the Utah Department of Environmental Quality, Division of Water Quality. 75 pages.	February 2007
Budy, P., J. Bottcher, and G.P. Thiede. 2009. Habitat needs, movement patterns, and vital rates of endemic Utah fishes in a tributary to the Green River, Utah. 2008 Annual Report to the Bureau of Reclamation, Upper Colorado Region. UTCFWRU 2009(4):1-52.	September 2009
Budy, P., J. Bottcher, and G.P. Thiede. 2008. Habitat needs, movement patterns, and vital rates of endemic Utah fishes in a tributary to the Green River, Utah. 2007 Annual Progress Report to the Beurea of Reclamation. UTCFWRU 2008(3):1-32.	June 2008
Budy, P., Giblin, A. and Crump, B. 2023. Final “Outcomes Report”, to National Science Foundation: Collaborative Research: An exploration of the direct and indirect effects of climatic warming on arctic lake ecosystems.	September 2023
Budy, P., G.P. Thiede, and T. Haddix. 2003. Rainbow trout growth and survival in Flaming Gorge Reservoir. Project XIV, Annual Reports to Utah Division of Wildlife Resources. 88 pages.	March 2004
Budy, P., G.P. Thiede, W.C. Saunders, and C. Meredith. 2011. Logan River whirling disease study: factors affecting trout population dynamics, abundance, and distribution in the Logan River, Utah. 2010 Annual Report to Utah Division of Wildlife Resources. Sport Fish Restoration, Grant number XIII. Project F-47-R. UCFWRU 2011(2):1-36.	April 2011
Budy, P., G.P. Thiede, W.C. Saunders, C. Meredith, H. Mohn, J. Augspurger, and B. Roholt. 2014. Logan River trout viability: long-term monitoring and evaluation. 2013 Progress Report to Utah Division of Wildlife Resources, Utah Watershed Restoration Initiative, and US Forest Service. UTCFWRU 2014(1):1-133.	March 2014
Budy, P., G.P. Thiede, M.D. McKell, and P. Thompson. 2014. Weber River metapopulation and source-sink dynamics of native and nongame fishes. 2013 Performance Report to Utah Division of Wildlife Resources. Sport Fish Restoration, Grant number: F-135-R, Segment 2. UTCFWRU 2014(4):1–54.	June 2014
Budy, P., G.P. Thiede, J. Wood, S. Seidel, and S. Bennett. 2008. Logan River whirling disease study: factors affecting trout population dynamics, abundance, and distribution in the Logan River, Utah. Grant Number XIII. Project F-47-R. 2007 Annual Report to Utah Division of Wildlife Resources. UCFWRU 2008(2):1-66 pages.	June 2008
Budy, P., G.P. Thiede, C. Meredith, and S. Seidel. 2009. Logan River whirling disease study: factors affecting trout population dynamics, abundance, and distribution in the Logan River, Utah. 2008 Annual Report to Utah Division of Wildlife Resources. Sport Fish Restoration, Grant number XIII. Project F-47-R. UTCFWRU 2009(2):1-43.	September 2009
Budy, P., G.P. Thiede, C. Meredith, and R. Chaston. 2010. Logan River whirling disease study: factors affecting trout population dynamics, abundance, and distribution in the Logan River, Utah. 2008 Annual Report to Utah Division of Wildlife Resources. Sport Fish Restoration, Grant number XIII. Project F-47-R. UTCFWRU 2010(2):1-55.	August 2010
Budy, P., G.P. Thiede , E.A. de la Hoz Franco, and S. Vatland. 2003. Logan River whirling disease study: factors affecting trout population dynamics, abundance, and distribution in the Logan River, Utah. Project XIII, Annual Report to Utah Division of Wildlife Resources. 50 pages.	March 2004
Budy, P., E. Hansen, and G.P. Thiede. 2008. Spawn Creek whirling disease study: understanding the effectiveness of passive stream bank and riparian protection in restoring the water quality, stream habitat, and fish community of and important trout stream. 2007 Final Report to Utah Division of Water Quality (Non-point Source 319[h] Project, Environmental Protection Agency 310[h], Grant Number 061139) and to Utah Division of Willdife Resources, Sport Fish Restoration. Grant number XIII. Project F-46-R. UCFWRU 2008(5):1-21.	May 2009
Budy, P., E. Hansen, and G.P. Thiede. 2006. Spawn Creek whirling disease study: evaluating the effectiveness of passive stream restoration for improving native fish health and reducing the impact of whirling disease. Grant Number XIII. Project F-47-R. 2005 Annual Report to Utah Division of Wildlife Resources. UCFWRU 2006(3):1-32.	June 2006
Budy, P., E. A. de la Hoz Franco, and G.P. Thiede. 2002. Logan River whirling disease study: factors affecting trout population dynamics, abundance, and distribution in the Logan River, Utah. Project XIII, Annual Report to Utah Division of Wildlife Resources. 67 pages.	March 2003
Budy, P., D. Epstein, T. Bowerman, and G.P. Thiede. 2012. Bull trout population assessment in northeastern Oregon: a template for recovery planning. 2011 Progress Report to US Fish and Wildlife Service. UTCFWRU 2012(2):1-80.	April 2012
Budy, P., B. Nadolski, and G.P. Thiede. 2010. Mill Creek trout study: factors affecting trout population dynamics, abundance, and distribution in the Mill Creek Basin, Utah. Project Completion Report to Utah Division of Wildlife Resources. Sport Fish Restoration. Grant Number XIII. Project F-47-R. UTCFWRU 2010(5):1-34.	May 2010
Budy, P., B. Nadolski, and G.P. Thiede. 2007. Factors affecting trout population dynamics, abundance, and distribution in the Mill Creek drainage, Utah. Grant Number XV. Project F-47-R. 2005 Annual Report to Utah Division of Wildlife Resources. UCFWRU 2007(4):1-39.	June 2007
Budy, P., A. Dean, and G.P. Thiede. 2009. Triploid trout in high Uinta lakes: a comparative evaluation of relative performance of triploid versus diploid brook trout. 2008 Annual Report to Utah Division of Wildlife Resources. Sport Fish Restoration, Grant number XIII. Project F-47-R. UTCFWRU 2009(3):1-45.	September 2009
Budy, P., A. Dean, G.P. Thiede, D. Olsen, and G. Rowley. 2010. Triploid trout in high Uinta lakes: a comparative evaluation of relative performance of triploid versus diploid brook trout. 2009 Annual Report to Utah Division of Wildlife Resources. Sport Fish Restoration, Grant number XIII. Project F-47-R. UTCFWRU 2010(4):1-65.	June 2010
Budy, P. and Walsworth, T.E. 2019. Review of the “Analytical framework for evaluating the proposed water management and maintenance actions on Rio Grande silvery minnow, southwestern willow flycatcher, and yellow-billed cuckoo and their critical habitats” with recommendations for future analytical considerations. USGS Utah Cooperative Fish and Wildlife Research Unit Report UCFWRU(1) 2019: 1-38.	February 2019
Budy, P. and N.L. Salant. 2011. Native fish status and trends and opportunities for improvement on the Lower Dolores River: Phase I. Report submitted to the Dolores River Dialogue Steering Committee. ICRRR 2011(1): 1-48.	February 2011
Budy, P. 2016. Understanding the effects of increased drying on desert rivers and fishes: how can we avert the "perfect storm"? Honorary Speaker for 2016: Portneuf Subunit of the Idaho Chapter of the American Fisheries Society. Idaho State University, April 28, 2016, Pocatello, ID	April 2016
Budy, P. 2001. Analytical approaches to assessing recovery options for Snake River chinook salmon. Project Report No. 1. Cooperative Fish and Wildlife Research Unit, Utah State University, Logan Utah. UTCFWRU 2001(1):1-86.	January 2001
Budy, P. S.K. Dahle, and G.P. Thiede. 2006. An evaluation of the fish community of Cutler Reservoir and the Bear River above Cutler with consider of the potential for future fisheries enhancement. 2005 Annual Report to Utah Division of Water Quality. 22 May 2006. 58 pages.	May 2006
Budy, P. E. Hansen, and G.P. Thiede. 2006. Spawn Creek whirling disease study: evaluating the effectiveness of passive stream restoration for improving native fish health and reducing the impact of whirling disease. Grant XIII, 2005 Annual Report to Utah Division of Wildlife Resources. UCFWRU 2006(3):1-32.	March 2006
Budy, P. 2016. Arctic Lakes: Where are we in the current project? Where are we going? Arctic LTER Annual Meeting 2016, Woods Hole Marine Biological Station, April 6, 2016, Woods Hole, MA.	April 2016
Budy, P. 2016. Annual Research Productivity Update: Highlights and Management Implications of 21 Different Research Projects in 2015 in QCNR. Utah Cooperative Fish and Wildlife Research Unit Annual Cooperator Coordinating Meeting, Utah State University, April 27, 2016, Logan, UT.	April 2016
Bjurlin, C. D., and J. A. Bissonette. 2001. The impact of predator communities on early life history stage survival of the desert tortoise at the Marine Corps Air Ground Combat Center, Twentynine Palms, California. Project Report No. 2. USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan Utah. 2001(2):1-81.	October 2001
Bissonette, J. A., and P. Cramer. 2005. Evaluation of the use and effectiveness of wildlife crossings. Interim Report prepared for the National Academy of Sciences (Transportation Research Board-National Cooperative Highway Research Program. 50 pages with 10 Appendices.	December 2004
Bissonette, J. A., and P. C. Cramer. 2008. Evaluation of the use and effectiveness of wildlife crossings. NCHRP Report 615, Transportation Research Board, National Research Council, National Academy of Science, 161 pages. URL: http://www.trb.org/news/blurb_detail.asp?id=9369.	August 2008
Bissonette, J. A., and M. Hammer. 2000. Effectiveness of earthen return ramps in reducing big game highway mortality in Utah. Project Report No. 1. USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan Utah. 2000:1-29.	January 2000
Bissonette, J. A., M. E. Lehnert, and M. Harrison. 2000. Lanes of destruction: effectiveness of highway right-of-way escape structures for mule deer. Abstract P. 124. In Wildlife and Highways: Seeking solutions to an ecological and socio-economic dilemma. (Proceedings of the symposium). 7th Ann. Meeting of the Wildlife Society, 12-16 September, Nashville TX.	January 2000
Bissonette, J. A., M. E. Lehnert, and J. W. Haefner. 2000. Dead on the road: mitigative models to address deer highway mortality. Abstract P. 52. In Wildlife and Highways: Seeking solutions to an ecological and socio-economic dilemma. (Proceedings of the symposium). 7th Ann. Meeting of the Wildlife Society, 12-16 September, Nashville TX.	January 2000
Bissonette, J. A., G. C. White, and P. R. Krausman. 2010. Review of Mule Deer Monitoring Plan, Pinedale (WY) Anticline. Submitted to the Mule Deer Monitoring Plan Review Committee, Wyoming Game and Fish Department and the Wyoming BLM. 11 Pages.	May 2010
Bissonette, J. A., E. Johnson, and T. L. Wilson. 2006. Sagebrush-Dominated Mountain Meadows Bird and Small Mammal Community Dynamics. Project Report No. 4. USGS Utah Cooperative Fish and Wildlife Research Unit, Utah State University, Logan Utah. 2006(4):1-166 (theses numbered independently within report)	May 2006
Bissonette, J. A., 2008. Evaluation of the use and effectiveness of wildlife crossings. NCHRP Report 615, Transportation Research Board, National Research Council, National Academy of Science, 161 pages. URL: http://environment.transportation.org/environmental_issues/wildlife_roads/decision_guide/manual	March 2008
Bingham, R. J., R. T. Larsen, J. A. Bissonette, and J. T. Flinders. 2009. Causes and consequences of ingested lead pellets in Chukars. Extended abstract Pages 190-193 in R. T. Watson, M. Fuller, M. Pokras, and W. G. Hunt, (Eds.). Ingestion of Lead from Spent Ammunition: Implications for Wildlife and Humans. The Peregrine Fund, Boise, Idaho, USA. DOI 10.4080/ilsa.2009.0204	August 2009
Bestgen, K. R., Budy, P. and W. J. Miller. 2011. Status and trends of flannelmouth sucker Catostomus latipinnis, bluehead sucker Catostomus discobolus, and roundtail chub Gila robusta, in the Dolores River, Colorado, and opportunities for population improvement: Phase II Report. Final report submitted to the Lower Dolores Plan Working Group-Legislative Committee. Larval Fish Laboratory Contribution 166 and Intermountain Center for River Rehabilitation and Restoration 2011(2): 1-55, + appendices.	May 2011
Adair, W. A., and J. A. Bissonette. 2004. Vegetation exclosures: What can they tell us about long-term range trends. Final Report to Utah Division of Wildlife Resources, U.S. Forest Service, and Bureau of Land Management. 176 pages including 4 Appendicies and 18 CDs (~7.5 Gb of ~14k scanned documents.	September 2004
Adair, W. A., J. A. Bissonette, and B. Hearn. 2001. American marten resting-site characteristics in western Newfoundland. Pages --------- in Harrison, D. J. & B. Hearn, eds. Proceedings Third International Martes Symposium. In Press	January 2000

Data or Software Releases

Type	Citation	Publication Date
Data Release	Van Tatenhove, A., Neill, J., Norvell, R.E., Stuber, E.F., and Rushing, C.S. Code for Scale-dependent population drivers inform avian management in a declining saline lake ecosystem. Version 1.0.0: U.S. Geological Survey software release. Reston, Va. https://doi.org/10.5066/P92IQ9BV	December 2021
Data Release	Stuber, Erica; Carlson, Ben; Jesmer, Brett (2021), Spatial personalities: a meta-analysis of consistent individual differences in spatial behavior, Dryad, Dataset, https://doi.org/10.5061/dryad.pc866t1pw	2021
Software Release	Stillman, Andrew et al. (2023). Leveraging the strengths of citizen science and structured surveys to achieve scalable inference on population size [Dataset]. Dryad. https://doi.org/10.5061/dryad.dfn2z357x	October 2023
Software Release	Stillman, A., et al. 2023. Leveraging the strengths of citizen science and structured surveys to achieve scalable inference on population size. Version 1.0.0: U.S. Geological Survey software release. Reston, Va. https://doi.org/10.5066/P9LY5F6R	August 2023
Software Release	Mirochnitchenko, N, E.F. Stuber, and J Fontaine. (2021) Data from: Biodiversity scale-dependence and opposing multi-level correlations underlie differences among taxonomic, phylogenetic, and functional diversity, Dryad, Dataset, DOI: 10.5061/dryad.bg79cnpbb	August 2023

Cooperative Fish and Wildlife Research Units Program: Utah Education, Research and Technical Assistance for Managing Our Natural Resources

Utah Research Activities

Cooperative Fish and Wildlife Research Units Program: Utah
Education, Research and Technical Assistance for Managing Our Natural Resources