Puerto Rico Long-Term Coral Reef Monitoring Program Database Compilation

Latest version published by United States Geological Survey on Nov 3, 2020 United States Geological Survey

The Puerto Rico Long-Term Coral Reef Monitoring Program (PRCRMP) database compilation includes raw biological data (by transect) from reef locations around the Puerto Rican archipelago. Substrate cover by sessile-benthic categories and fish, and motile megabenthic invertebrate taxonomic composition and densities have been characterized in these stations, with variable sampling event frequencies between 1999 to 2019. At present, 42 permanent stations are surveyed biannually (21 per year). For the benthic characterization, a set of five 10-meter-long permanent transects are surveyed at each station. Sessile-benthic reef communities are characterized by the continuous intercept chain-link method, following the Caribbean Coastal Marine Productivity (CARICOMP) (1994) protocol. Demersal diurnal non-cryptic reef fish populations and motile megabenthic invertebrates are surveyed by sets of five 10 x 3 meters wide (30 m2) belt-transects centered along the reference line of transects used for sessile-benthic characterizations at each reef station. From 2004-2013, a diver completed an Active Search Census (ASEC) survey for 30 minutes annotating sizes and abundances of fish and macroinvertebrate species of interest. From 2015-2019, the ASEC survey methodology was replaced by 20 x 3 meters (60 m2) band transects to identify commercially and ecologically important fish and megabenthic invertebrate species. Upon completion of the 10 meters belt-transect survey, the diver swims along the same depth and physiographic reef zone for an extra 10 meters to complete the 60 m2 transect. For each fish individual within the ASEC survey (2004-2013) and 60m2 band transects (2015-2019), a visual fork length (FL) estimate in centimeters is recorded. Fish length estimations are provided by the median of 5cm interval size classes. The cephalothorax length (measurement from the tip of the rostrum to end of the thorax), also known as carapace length (CL) in centimeters is used to report the size of lobsters (Panulirus spp., Scyllarides spp.) within belt-transects. Queen conch (Lobatus gigas) length is reported as the total (diagonal) shell length in centimeters. With the length-weight relationship information available in FishBase.org, biomass estimates are calculated for a subset of commercially and ecologically important fish species. The PRCRMP database was made possible with support from the National Oceanic and Atmospheric Administrations Coral Reef Conservation Program.

Data Records

The data in this sampling event resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 3,505 records. 2 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.

  • Event (core)
    3505
  • ExtendedMeasurementOrFact 
    1081249
  • Occurrence 
    841422

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Downloads

Download the latest version of this resource data as a Darwin Core Archive (DwC-A) or the resource metadata as EML or RTF:

Data as a DwC-A file download 3,505 records in English (40 MB) - Update frequency: unknown
Metadata as an EML file download in English (9 KB)
Metadata as an RTF file download in English (8 KB)

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

Department of Natural and Environmental Resources of Puerto Rico (2019) Puerto Rico Long-Term Coral Reef Monitoring Program Database Compilation (1999-2019). [indicate subset used]. Ocean Biogeographic Information System. Dataset. https://obis.org/dataset/52f99f08-fc90-4684-aea8-a015150968ea

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is United States Geological Survey. To the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: b3b7d5c4-f73a-475b-a203-c6a1ddd040cd.  United States Geological Survey publishes this resource, and is itself registered in GBIF as a data publisher endorsed by U.S. Geological Survey.

Keywords

Samplingevent

Contacts

Who created the resource:

Miguel G. Figuerola Hernández
Technical Support Staff
Caribbean Coastal Ocean Observing System (CARICOOS) / Puerto Rico Coral Reef Monitoring Program and Outreach Coordinator, PR DNER
José Santiago
Technical Support Staff
Caribbean Coastal Ocean Observing System (CARICOOS)

Who can answer questions about the resource:

Ernesto Díaz
Director of the Office for Coastal Management and Climate Change
Puerto Rico Department of Natural and Environmental Resources (PR DNER)
Jorge Capella
Data Management and Communications Coordinator
Caribbean Coastal Ocean Observing System (CARICOOS)
Julio Morell
Executive Director
Caribbean Coastal Ocean Observing System (CARICOOS)

Who filled in the metadata:

Miguel G. Figuerola Hernández
Technical Support Staff / Puerto Rico Coral Reef Monitoring Program and Outreach Coordinator,
Caribbean Coastal Ocean Observing System (CARICOOS) / Puerto Rico Department of Natural and Environmental Resources (PR DNER)

Who else was associated with the resource:

Publisher
Abby Benson
Biologist
U.S. Geological Survey

Geographic Coverage

This dataset covers the archipelago of Puerto Rico located in the northeastern Caribbean Sea, Western North Atlantic Ocean. The Puerto Rican archipelago includes east to west: Culebra-Vieques islands, the main island of Puerto Rico, Caja de Muertos (south coast of Puerto Rico), and Desecheo-Mona islands.

Bounding Coordinates South West [17.884, -67.949], North East [18.49, -65.197]

Additional Metadata

marine, harvested by OBIS

Alternative Identifiers b3b7d5c4-f73a-475b-a203-c6a1ddd040cd
https://www1.usgs.gov/obis-usa/ipt/resource?r=prcrmp_database