Cooperative Fish and Wildlife Research Units Program: Oregon
Education, Research and Technical Assistance for Managing Our Natural Resources

Oregon Staff Member


Dr. James T. Peterson

Unit Leader is an avid angler

Unit Leader
Phone: (541) 737 - 1963
Email: james_peterson@usgs.gov
Alt. Email: http://www.petersonlabosu.org/
Personal website

Education

  • Ph D University of Missouri 1996
  • MS University of Illinois 1989
  • BS University of Illinois 1986
Research Publications Publication Date
Whitlock, S.L., T.M. Lewis, and J.T. Peterson. 2020. Using a Bayesian Multistate Occupancy Model to Assess Seabird and Shorebird Status in Glacier Bay, Alaska. Wildlife Society Bulletin https://doi.org/10.1002/wsb.1100 October 2020
Whitlock, S.L, J.N. Womble, and J.T. Peterson. Modelling Pinniped Abundance and Distribution Using Counts at Terrestrial Sites and In-Water Sightings. Ecological Modelling March 2020
Wenger, S.J, M. C. Freeman, L. A. Fowler, B. J. Freeman, and J. T. Peterson. Conservation planning for imperiled aquatic species in an urbanizing environment. Landscape and Urban Planning 97(1):11-21. June 2010
Wenger, S. J., J. T. Peterson, M. C. Freeman, B. J. Freeman, D. D. Homans. 2008. Stream fish occurrence in response to impervious cover, historic land use and hydrogeomorphic factors Canadian Journal of Fisheries and Aquatic Sciences 65: 1250?1264 June 2008
Weigel, D. E., J. T. Peterson, and P. Spruell. 2003. The distribution of introgressive hybridization between westslope cutthroat trout and rainbow trout in the Clearwater Basin, Idaho. Ecological Applications. 13:38-50. February 2003
Weigel, D. E., J. T. Peterson, and P. Spruell. 2002. A probabilistic model to detect introgression between westslope cutthroat trout and rainbow trout based on phenotypic characteristics. Transactions of the American Fisheries Society April 2002
Walsh, M. G., J. T. Peterson, and T. J. Kwak. 2004. Influence of Long-Term Streamflow Variation on Recruitment of Riverine Fish Populations. Pages 21-25 in J. R. Copeland, F. Fiss, P. E. Balkenbush, and C. S. Thomason, editors. Warmwater streams symposium II. Available online: www. sdafs. org/wwstreams/wwsc1. htm. February 2004
Tyre A.J., J.T. Peterson, S.J. Converse, T. Bogich, W.L. Kendall, D. Miller, M. Post Van Der Burg, C. Thomas, R. Thompson, J. Wood, D.C. Brewer, and M.C. Runge 2011. Adaptive management of bull trout populations in the Lemhi Basin. Journal of Fish and Wildlife Management. 2:262-281 | Abstract | Publisher Website December 2011
Thurow, R.F., J.T. Peterson, G.L. Chandler, C. M. Moffitt, and T. C. Bjornn. 2020 Concealment of Juvenile Bull Trout in Response to Temperature, Light, and Substrate: Implications for Detection. PloS ONE https://doi.org/10.1371/journal.pone.0237716 September 2020
Thurow, R. F., J. T. Peterson, and J. W. Guzevich. 2006. Utility and validation of day and night snorkel counts for estimating bull trout abundance in 1st to 3rd order streams North American Journal of Fish Management. 26:217?232 May 2006
Sitompul, A. F., J. P. Carroll, J. Peterson, and S. Hedges. 2008 Modelling Impacts of Poaching on the Sumatran Elephant Population in Way Kambas National Park, Sumatra, Indonesia. Gajah 28: 31-40 August 2008
Shoults-Wilson, W.A., J. T. Peterson, J. M. Unrine, J. Rickar, M. C. Black. The Asian clam Corbicula fluminea as a biomonitor of trace element contamination: Accounting for different sources of variation using an hierarchical linear model. Environmental Toxicology and Chemistry 28:2224-2232. September 2009
Shea, C.P., J.T. Peterson, M.J. Conroy, and J.M Wisnewski. 2013. MODELING THE OCCURRENCE OF FRESHWATER MUSSELS WHILE ACCOUNTING FOR INCOMPLETE DETECTION AND MISIDENTIFICATION OF SPECIES. Freshwater Biology 58: 382–395 | Abstract February 2013
Shea, C.P, J.T. Peterson, and J. M Wisniewski. Misidentification of Freshwater Mussel Species (Bivalvia:Unionidae): Contributing Factors, Management Implications, and Potential Solutions. Journal of the North American Benthological Society 30(2):446-458 April 2011
Shea, C. P., and J. T. Peterson. An evaluation of the relative influence of habitat complexity and habitat stability on fish assemblage structure in unregulated and regulated reaches of a large southeastern warmwater stream. Transactions of the American Fisheries Society 136:943?958. July 2007
Schreck, C.B, D. D. Roby, K. Dugger, and J. Peterson. 2015. Meeting Cooperator Needs: Examples from the Oregon Cooperative Fish and Wildlife Research Unit. Transactions of the North American Wildlife and Natural Resources Conference 80. Omaha, NE. July 2015
Scheerer, P.D., J.T. Peterson, and S. Clements. 2017. Distribution and abundance of Millicoma Dace in the Coos River Basin, Oregon. Northwestern Naturalist. 98: 39-47. July 2017
Scheerer, P.D, S. Clements, S.E. Jacobs, and J.T. Peterson. 2016.Status, Distribution, and Life History of the Warner Sucker in Southeastern Oregon. Northwestern Naturalist 97(3):205-225 July 2016
Runge, J. R., J. T. Peterson, C. R. Martin. 2008. Survival and dispersal of hatchery-raised rainbow trout (Onchorynchus mykiss)in a river basin undergoing urbanization. North American Journal of Fisheries Management 28:745?757 March 2008
Ruiz, J., and J. T. Peterson. An Evaluation of the Relative Influence of Spatial, Statistical, and Biological Factors on the Accuracy of Stream Fish Species Presence Models. Transactions of the American Fisheries Society 136:1640-1653. December 2007
Rowe, J.C., A. Duarte, C.C. Pearl, B. McCreary, S. Galvan, J.T.Peterson, M.J. Adams. 2019. Disentangling effects of invasive species and habitat while accounting for observer error in a long-term amphibian study. Ecosphere August 2019
Rieman, B. E., J. T. Peterson, J. Clayton, P. Howell, R. F. Thurow, W. Thompson, and D. C. Lee. 2001. Evaluation of the potential effects of federal land management alternatives on the trends of salmonids and their habitats in the Interior Columbia River Basin. Journal of Forest Ecology and Management August 2001
Reinert, T. R., and J. T. Peterson. 2008. Modeling the Effects of Potential Salinity Shifts on the Recovery of Striped Bass in the Savannah River Estuary, Georgia-South Carolina, U. S. Environmental Management. 41:753-765 April 2008
Reiman, B. E., J. T. Peterson, and D. L. Myers. 2006. Have Brook Trout Displaced Bull Trout in Streams of Central Idaho ?: An Empirical Analysis of Distributions Along Elevation and Thermal Gradients Canadian Journal of Fisheries and Aquatic Sciences 63: 63-78. April 2006
Rabeni, C. F., J. Lyons., N. Mercado-Silva, J. T. Peterson. 2009. Warmwater Fish in Wadeable Streams, chapter 4 in Standard Sampling Methods for North American Freshwater Fishes. S. Bonar, D. Willis and W. Hubert, editors. August 2009
Price, A.L. and J.T. Peterson. Estimation and Modeling of Electrofishing and Seining Capture Efficiency for Fishes in Wadeable Warmwater Streams. North American Journal of Fisheries Management April 2010
Powell, L.A., A.J. Tyre, M.J. Conroy, J.T. Peterson, and B.K. Williams. 2011 Integrating adaptive management into wildlife curricula. The Wildlife Professional 5(2): 74-76. April 2011
Peterson, R. C., C. A. Jennings, and J. T. Peterson. 2012. River discharge effects on abundance of age-0 redhorses (Moxostoma spp.) in the Oconee River, Georgia, USA, with implications for robust redhorse. River Research and Application. 29:734-742. March 2012
Peterson, J.T., P.D. Scheerer, S. Clements. 2015. An evaluation of the efficiency of minnow traps for estimating the abundance of minnows in desert spring systems. North American Journal of Fisheries Management. 35: 491-502. May 2015
Peterson, J.T., J.M. Wisniewski, C.P. Shea, and C.R. Jackson. 2011. Estimation of mussel population response to hydrologic alteration in a Southeastern U.S. stream. Environmental Management 48:109-122. July 2011
Peterson, J.T. and M.F. Barajas. 2018. An evaluation of three fish surveys in the Bay-Delta, 1995-2015. San Francisco Estuary and Watershed Science 16:4 December 2018
Peterson, J.T. and M.C. Freeman.2016. Integrating Modeling, Monitoring, and Management to Reduce Critical Uncertainties in Water Resource Decision Making. Journal of Environmental Management 183(Pt 2):361-370. doi: 10.1016/j.jenvman.2016.03.015. December 2016
Peterson, J.T. and J. Dunham. 2010 Scale and Fishery Management. Chapter 3 in W. Hubert and M. Quist, eds. Inland Fisheries Management, 3rd edition. American Fisheries Society, Bethesda, MD. October 2010
Peterson, J.T. and C.P. Shea. 2015. An evaluation of the relations between flow regime components, stream characteristics, and species traits and meta-demographic rates of warmwater streams fishes: Implications for aquatic resource management. River Research and Applications 31: 1227–1241 | Download May 2015
Peterson, J.T. and A. Duarte. 2020. Decision analysis to develop and evaluate restoration strategies for Chinook salmon in California’s Central Valley. Restoration Ecology https://doi.org/10.1111/rec.13244 | Abstract | Publisher Website November 2020
Peterson, J., C. Moore, S. Wenger, K. Kennedy, E. Irwin, and M. Freeman. 2007. Adaptive management applied to aquatic natural resources. Chapter 6.4 in Proceedings of the 2007 Georgia Water Resources Conference, March 27-29, Athens. | Abstract | Download | Publisher Website March 2007
Peterson, J. T., and T. J. Kwak. 1999. Modeling the effects of land use and climate change on riverine smallmouth bass. Ecological Applications 9: 1391-1404. November 1999
Peterson, J. T., and R. S. Mordecai. 2006. Review of Occupancy estimation and modeling. The Auk 123:1201-1202. October 2006
Peterson, J. T., and P. B. Bayley. 2004. A Bayesian Approach to Estimating Presence When a Species is Undetected. in W. L. Thompson, editor. Sampling Rare or Elusive Species: Concepts, Designs and Techniques for Estimating Population Parameters. Island Press, Covelo, CA. December 2004
Peterson, J. T., and J. W. Evans. 2003. Decision analysis for sport fisheries management. Fisheries. 28(1):10-20. January 2003
Peterson, J. T., and J. Dunham. 2003. Combining inferences from models of capture efficiency, detectability, and suitable habitat to classify landscapes for conservation of threatened bull trout. Conservation Biology 17:1070-1077. August 2003
Peterson, J. T., and C. F. Rabeni. 2001. The relation of fish assemblages to channel units in an Ozark stream Transactions of the American Fisheries Society 130: 911-926 September 2001
Peterson, J. T., and C. F. Rabeni. 2001. Evaluating the physical characteristics of channel units in an Ozark stream. Transactions of the American Fisheries Society 130(5):898-910. September 2001
Peterson, J. T., R. F. Thurow, and J. Guzevich. 2004 An evaluation of multi-pass electrofishing for estimating the abundance of stream-dwelling salmonids. Transactions of the American Fisheries Society 133:462-475. March 2004
Peterson, J. T., N. P. Banish, and R. F. Thurow. 2005. Are blocknets necessary? Movements of stream-dwelling salmonids in response to three common survey methods. North American Journal of Fish Management 25:732?743 April 2005
Peterson, J. T., J. Dunham, P. Howell, S. Bonar, R. Thurow. 2002. Protocol for determining bull trout presence. Western Division of the American Fisheries Society. American Fisheries Society, Bethesda, Maryland. (This is a peer-refereed special publication of the Western Division of the American Fisheries Society). April 2002
Peterson, J. T., C. R. Jackson, C. P. Shea, and G. Li. The development and evaluation of a stream channel classification for estimating the response of fishes to changing streamflow. Transactions of the American Fisheries Society | Abstract September 2009
Peterson, J. T. and C. Paukert. 2009. Data conversion, Chapter 12 in Standard Sampling Methods for North American Freshwater Fishes. S. Bonar, D. Willis and W. Hubert, editors. August 2009
Peterson, D. L. J. T. Peterson, and R. F. Carline. 2006. Effects of zooplankton density on survival of stocked walleye fry in five Pennsylvania reservoirs. Journal of Freshwater Ecology. 21:121-129. May 2006
Peterson J. T., and C. F. Rabeni. 2001. Evaluating the efficiency of a one-square-meter quadrat sampler for riffle-dwelling fish. North American Journal of Fisheries Management 21:76-85. March 2001
Neal, T. M.L. Kent, J. Sanders, C.B. Schreck, and J.T. Peterson. 2021. Laboratory infection of juvenile Chinook Salmon (Oncorhynchus tshawytscha) with parasitic copepod (Salmincola californiensis). Journal of Fish Diseases 44:1423-1434 https://doi.org/10.1111/jfd.13450 | Abstract May 2021
Meador, J.M. and J.T. Peterson. 2011. An Evaluation of the Factors Influencing Freshwater Mussel Sampling and Demographics in a Large Lowland River. Journal of the North American Benthological Society 30(2):507-521 April 2011
McCargo, J. W. and J. T. Peterson. 2010. An evaluation of the influence of seasonal base flow and geomorphic stream characteristics on Coastal Plain stream fish assemblages. Transactions of the American Fisheries Society 139: 29-48 | Abstract January 2010
Mattsson, B. J., R S. Mordecai, M. J. Conroy, J. T. Peterson, R. J. Cooper, And H. Christensen. 2008. When does N0 matter? A stochastic population viability analysis for imperiled large-bodied woodpeckers, with implications for the recently rediscovered Ivory-billed woodpecker. Avian Conservation and Ecology 3(2): 5. [online] URL: http://www.ace-eco.org/vol3/iss2/art5/ | Publisher Website December 2008
Markle, D.F., A. Janik, J.T. Peterson, A. Choudhry, D.C. Simon, V.V. Tkach, M.R. Terwilliger, J.L. Sanders, and M.L. Kent. 2020. Odds ratios and hurdle models: a long-term analysis of parasite-host infection patterns in endangered young-of-the-year suckers from Upper Klamath Lake, Oregon. International Journal for Parasitology https://doi.org/10.1016/j.ijpara.2020.02.001 April 2020
MacCluskie, M., A. Romito, J.T. Peterson, and J.P. Lawler. 2016. A formalized approach to making effective natural resource management decisions on Alaska National Parks. Park Science 14(1) April 2016
Kwak, T. J., and J. T. Peterson. Community Indices, Parameters, and Comparisons. Pages 667-763. In M. Brown and C. Guy, editors. Analysis and interpretation of Freshwater Fisheries Data. American Fisheries Society, Bethesda, Maryland. November 2007
Kurnianto, S., J. Selker, J. B. Kauffman, D. Murdiyarso, J. T. Peterson. 2018. The influence of land cover changes on the variability of saturated hydraulic in tropical peatlands. Mitigation and Adaptation Strategies for Global Change. doi:10.1007/s11027-018-9802-3 April 2018
Konwick, B. J., G. T. Tomy, N. Ismail, J. T. Peterson, R. J. Fauver, D. Higginbotham, M. Blount|, A. T. Fisk. 2008. Concentrations and patterns of perfluorinated compounds in Georgia (USA) surface waters near and distant to a major use source. Environmental Toxicology and Chemistry 27:2011-2018. September 2008
Kirsch, J.E., J.L.Day, J.T.Peterson, and D.K. Fullerton. 2018. Fish Misidentification and Potential Implications to Monitoring Within the San Francisco Estuary, California. Journal of Fish and Wildlife Management 9: 467-485. December 2018
Kirsch, J.E and J.T. Peterson. 2014. A multi-scaled approach to evaluating the fish assemblage structure within southern Appalachian streams USA. Transactions of the American Fisheries Society. 143:1358-1371. | Abstract | Download October 2014
Jensen, A.J., C.B. Schreck, and J.T. Peterson. 2021 Rapid Phenotypic Stock Identification of Chinook Salmon in Recreational Fishery Management. Marine and Coastal Fisheries 13: 99-112. https://doi.org/10.1002/mcf2.10145 | Abstract | Publisher Website April 2021
Jensen, A. J., C.B. Schreck, J.E. Hess, S. Bohn, K.G. O'Malley, and J.T. Peterson. 2021. Genetic Advances in Recreational Fisheries Management. North American Journal of Fisheries Management 41:130-141. DOI:10.1002/nafm.10542. | Publisher Website February 2021
Irwin, ER, MC Freeman, J Peterson, MC Lloyd, KDM Kennedy, K Ouellette and E Kosnicki. 2019. Adaptive Management of Flows from R.L. Harris Dam, (Tallapoosa River, Alabama): Stakeholder Process and Use of Biological Monitoring Data for Decision Making. Open File Report 2019-1026, 93pages,
https://doi.org/x.
March 2019
Howell, J. A., J. T. Peterson, and M. J. Conroy. 2008. Building Hierarchical Models of Avian Distributions for the State of Georgia. Journal of Wildlife Management. 72:168?178. January 2008
Homer, M.D., J. T. Peterson, and C. A. Jennings. 2015. Evaluation of Three Aging Techniques and Back-calculated Growth for Introduced Blue Catfish from Lake Oconee, Georgia. Southeastern Naturalist 14(4):740–756. December 2015
Grossman, G. D., R. E. Ratajczak, J. T. Petty, M. D. Hunter, J. T. Peterson, and G. Grenouillet. in press. Population dynamics of mottled sculpin (Pices:Cottidae) in a variable environment: an information theoretic approach. Ecological Monographs July 2006
Grabowski, T. B., T. D. Ferguson, J. T. Peterson, and C. A. Jennings. 2009. Capture probability and behavioral response of robust redhorse, an cryptic riverine fish, to electrofishing. North American Journal of Fisheries Management 29:721–729. | Abstract | Publisher Website June 2009
Fritts, A.K, J.T. Peterson, P.D. Hazelton, and R.B. Bringolf. 2015. Evaluation of methods for assessing physiological biomarkers of stress in freshwater mussels. Canadian Journal of Fisheries and Aquatic Sciences. 72: 1450-1459. 10.1139/cjfas-2014-0564. March 2015
Fritts, A.K, J.T. Peterson, J. M. Wisniewski, and R. B. Bringolf. 2015 Non-lethal assessment of freshwater mussel physiological response to changes in environmental factors. Canadian Journal of Fisheries and Aquatic Sciences. 72:1460-1468, 10.1139/cjfas-2014-0565 June 2015
Frisch, J.R. J.T. Peterson, K.K. Cecala, J.C. Maerz, C. R. Jackson, T. L. Gragson, and C. M. Pringle. PATCH OCCUPANCY OF STREAM FAUNA ACROSS A LAND COVER GRADIENT IN THE SOUTHERN APPALACHIANS, USA. Hydrobiologia (2016) 773:163–175 March 2016
Freeman, M. C., Buell, G. R., Hay, L. E., Hughes, W. B., Jacobson, R. B., Jones, J. W., Jones, S. A., Lafontaine, J. H., Odom, K. R., Peterson, J. T., Riley, J. W., Schindler, J. S., Shea, C. and Weaver, J. D. (2013), LINKING RIVER MANAGEMENT TO SPECIES CONSERVATION USING DYNAMIC LANDSCAPE-SCALE MODELS. River Research and Application 29: 906–918 | Abstract July 2013
Freeman, M. C., Buell, G. R., Hay, L. E., Hughes, W. B., Jacobson, R. B., Jones, J. W., Jones, S. A., Lafontaine, J. H., Odom, K. R., Peterson, J. T., Riley, J. W., Schindler, J. S., Shea, C. and Weaver, J. D. (2012), LINKING RIVER MANAGEMENT TO SPECIES CONSERVATION USING DYNAMIC LANDSCAPE-SCALE MODELS. River Research and Application. doi: 10.1002/rra.2575 | Abstract March 2012
Favrot, S.D., B.C. Jonasson, and J.T. Peterson. Fall and Winter Microhabitat Use and Suitability for Spring Chinook Salmon Parr in a Pacific Northwest River, USA. Transactions of the American Fisheries Society 147:151-170 April 2018
Dycus, J.C., J.M. Wisniewski, and J.T. Peterson. 2015. The effects of flow and stream characteristics on freshwater mussel growth in a Southeast US river basin. Freshwater Biology 60: 395-409. | Abstract January 2015
Dunham, J. B., B. E. Rieman, and J. T. Peterson. 2002. Patch-based models of species occurrence: lessons from salmonid fishes in streams. in J. M. Scott and P. J. Heglund, editors. Predicting Species Occurrences: Issues of Scale and Accuracy. January 2002
Duarte, A., S.L. Whitlock, and J.T. Peterson. 2019. Species Distribution Modeling. Volume 2, Pages 189-198 in B. Fath editor. Encyclopedia of Ecology, Second Edition. Elsevier, Amsterdam October 2018
Duarte, A., J.T. Peterson, C.A. Pearl, J.C. Rowe, B. McCreary , S.K. Galvan, and M.J. Adams. 2020. Estimation of metademographic rates and landscape connectivity for a conservation-reliant anuran. Landscape Ecology 35: 1459–1479. https://doi.org/10.1007/s10980-020-01030-8
| Abstract
April 2020
Duarte, A., C.A. Pearl, M.J. Adams, and J.T. Peterson. A new parameterization for integrated population models to document amphibian reintroduction efforts. Ecological Applications. July 2017
Duarte, A. M.J. Adams, and J.T. Peterson. Fitting N-mixture models to count data with unexplained heterogeneity: bias, diagnostics, and alternative approaches. Ecological Modelling January 2018
Dolan, B.P., K. M. Fisher, M. E. Colvin, S. E. Benda, J. T. Peterson, M. L. Kent, and C. B. Schreck. 2016. Innate and adaptive immune responses in migrating spring-run adult Chinook Salmon, Oncorhynchus tshawytscha. Fish and Shellfish Immunology 48:136-44 February 2016
Dennard, S., J. T. Peterson, and E. S. Hawthorne. 2009. The Life History and Ecology of Cambarus halli, an Endemic Crayfish of the Tallapoosa River Basin, Georgia. Southeastern Naturalist 8:479-494. September 2009
DeWeber, J.T., J.T.Peterson, C. Sharpe, M.L. Kent, M.E. Colvin, C.B. Schreck. A hidden-process model for estimating prespawn mortality using carcass survey data. North American Journal of Fisheries Management January 2017
DeWeber, J.T. and J.T. Peterson. 2020. Identifying and implementing environmental flows through structured decision-making: case study from the Willamette River, Oregon, USA. Journal of the American Water Resources Association 1– 16. https://doi.org/10.1111/1752-1688.12845 April 2020
Craven, S.W., J.T. Peterson, M.C. Freeman, T.J. Kwak, and E. Irwin. 2010. Modeling the relations between flow regime components, species traits and spawning success of fishes in warmwater streams. Environmental Management. 46(2):181-194 July 2010
Conroy, M.J. and J.T. Peterson. 2013. DECISION MAKING IN NATURAL RESOURCE MANAGEMENT: A STRUCTURED, ADAPTIVE APPROACH. Wiley- Blackwell | Publisher Website April 2013
Conroy, M. J., C. R. Allen, J. T. Peterson, L. Pritchard, Jr., and C. T. Moore. 2003. Landscape change in the southern Piedmont: challenges, solutions, and uncertainty across scales. Conservation Ecology 8(2): 3. [online] URL: http://www.consecol.org/vol8/iss2/art3. | Abstract | Download | Publisher Website December 2003
Conroy, M. J. J. T. Peterson, O. L. Bass, C. J. Fonnesbeck, J. E. Howell, C. T. Moore, and J. P. Runge. 2008. Sources of variation in detection of wading birds from aerial surveys in the Florida Everglades. Auk 125:731-743. | Abstract | Download | Publisher Website July 2008
Conroy M.J. and J.T. Peterson. 2009. Integrating management, research, and monitoring: balancing the 3-legged stool. Pages 413 - 421 in Cederbaum S.B., Faircloth B.C., Terhune T.M., Thompson J.J., and Carroll J.P., eds. Gamebird 2006: Quail VI and Perdix XII. 31 May - 4 June 2006. Warnell School of Forestry and Natural Resources, Athens, GA, USA. July 2009
Colvin, M.E., J.T. Peterson, M. L. Kent, and C. B. Schreck. 2015. Occupancy modeling for improved accuracy and understanding of pathogen prevalence and dynamics. Plos ONE. 10(3): e0116605. doi:10.1371/journal.pone.0116605 March 2015
Colvin, M.E., J.T. Peterson, C. Sharpe, M.L.Kent, C.B. Schreck. 2018. Identifying optimal translocation policies given factors associated with adult spring-run Chinook Salmon translocation mortality. River Research and Applications 34:1158–1167 December 2018
Colvin, M.E. and J.T. Peterson. 2017. Preparing future fisheries professionals to make good decisions. Fisheries 41:473-474 July 2017
Cecala, K.K, J. C. Maerz, J. R. Frisch, T. L. Gragson, J. Hepinstall-Cymerman, D. S. Leigh, C. R. Jackson, J. T. Peterson, and C. M. Pringle. 2018. Multiple drivers, scales, and interactions influence southern Appalachian stream salamander occupancy. Ecosphere 9: 1:19 January 2018
Carswell, B. L., J. T. Peterson, and C. A. Jennings. 2015. Tidal Management Affects Sub-adult Fish Assemblages in Impounded South Carolina Marshes. Wetlands Ecology and Management 23(6):1015-1031. June 2015
Brignon, W.R., M. M. Pike, L. O. E. Ebbesson, H. A. Schaller, J. T. Peterson, C. B. Schreck. Rearing Environment Influences Brain and Lens Development, Boldness, and Prey Acquisition Behavior of Bull Trout. Environmental Biology of Fishes. April 2018
Brignon, W.B., J.T. Peterson, J. B. Dunham, H.A. Schaller, and C. B. Schreck. Evaluating Tradeoffs in Bull Trout Reintroduction Strategies Using Structured Decision Making. Canadian Journal of Fisheries and Aquatic Sciences July 2017
Benjamin, J.R., McDonnell, Kevin, Dunham, J.B., Brignon, W.R., and Peterson, J.T., 2017, Structured decision making for conservation of bull trout (Salvelinus confluentus) in Long Creek, Klamath River Basin, south-central Oregon: U.S. Geological Survey Open-Report 2017–1075, 32 p., https://doi.org/10.3133/ofr20171075. | Publisher Website June 2017
Bayley, P. B., and J. T. Peterson. 2001. Species presence for zero observations: an approach and an application to estimate probability of occurrence of fish species and species richness. Transactions of the American Fisheries Society. 130: 620-633. July 2001
Banish, N. P., J. T. Peterson, R. F. Thurow. 2007. Physical, Biotic, and Sampling Influences on Diel Habitat Use by Stream-Dwelling Bull Trout. North American Journal of Fisheries Management. 28:176-187. February 2008
Anderson, G.B., M.C. Freeman, B.J. Freeman, C.A. Straight, M.M Hagler, and J.T. Peterson. 2012. Dealing With Uncertainty When Assessing Fish Passage Through Culvert Road Crossings. Environmental Management 3: 462-477 | Abstract June 2012
Albanese, B., P. L. Angermeier, and J. T. Peterson. Does mobility limit rates of colonization and population recovery among stream fishes? Freshwater Biology 7:1444-1460. May 2009
Albanese, B. R., J. T. Peterson, B. J. Freeman, and D. Wieler. 2007 Accounting for Incomplete Detection when Estimating Site Occupancy of Pteronotropis welaka (Bluenose Shiner) in Southwest Georgia. Southeastern Naturalist 6(4):669-682. January 2007
3. Stewart, H.A., D.L.G. Noakes, K.M. Cogliati, J.T. Peterson, M.H. Iversen, and C.B. Schreck. 2016. Salinity effects on plasma ion levels, cortisol, and osmolality in Chinook salmon following lethal sampling. Comparative Biochemistry and Physiology, Part A. 192:38-43. October 2016
Project Completion Date
Use of occupancy modeling to estimate the abundance distribution of introduced Robust Redhorse in Upper Reaches of the Ocmulgee River, GA December 2011
Influence of Limnological Classification on sportfish production in lakes on Georgia's Public Fishing Areas June 2012
Structured Decision Making for Brown Bears on National Park Service Lands in Alaska: Integration of Monitoring to Inform Management December 2013
The Development of an Adaptive, Decision-Support Tool for the Conservation and Recovery of Least Chub, Iotichthys phlegethontis December 2013
Water availability for ecological needs: A pilot study of the Upper Flint River System, GA September 2010
Science support for the upper Coosa Basin, Phase I December 2009
Park monitoring: Using decision models to assist vital signs monitoring in National Parks, a prototype using sea otters (Enhydra lutris) in coastal Alaska December 2010
Multi-resolution Assessment of potential Climate Change Effects on Aquatic and Hydrologic Dynamics Part I: Estimating Ecological Change September 2013
Decision Support Models for the Conservation and Recovery of Imperiled Mussels September 2012
Chinook salmon passage and recovery on the Willamette River May 2021
The development of integrated adaptive management for restoration of freshwater-estuarine ecosystems April 2021
The development and evaluation of monitoring protocols to inform water resource decision making September 2021
Integrating monitoring, modeling, and management for amphibian conservation in the western United States September 2021
Assessing the value of prior and novel information in managing a mixed-stock recreational Chinook Salmon fishery June 2021
Adaptively Manageing Instream Flows for Ecological Needs August 2020
Couch, Claire
Post Doc
couchc@oregonstate.edu

Diaz, Lauren
PhD
lauren.diaz@oregonstate.edu

Gardner, Ethan
Master's
ethangardner97@gmail.com

Gee, Sean
PhD
sean.gee@oregonstate.edu

Katherine, Carey
Master's
katherine.carey@oregonstate.edu

Kusaka, Carina
Master's
carina.kusaka@oregonstate.edu

Lunda, Erin
PhD
erin.gilligan@oregonstate.edu

Wohner, Patti
Post Doc
wohnerp@oregonstate.edu

Presentations Presentation Date
Wohner, P., A. Duarte, and J. Peterson. 2021. Optimizing Spring Flows for Juvenile Chinook Salmon Survival Through the San Joaquin River Delta. National Stream Restoration Conference, August 22-24, Baltimore, MD. August 2021
Whitlock, S., J. Womble, C. Gabriel, and J. Peterson.2017. Modeling pinniped abundance and distribution using haulout counts and in-water sightings. 2017 Ecological Society of America Annual Meeting, August 6-11, Portland Oregon. August 2017
Whitlock, S., C. Baker, and J.T. Peterson. 2019. The value of model-based estimators for enumerating fish at passage barriers: an example involving Pacific lamprey at Willamette Falls, Oregon. Annual Meeting of the American Fisheries Society, Reno NV. September 2019
White, J., R. Wallick, L. Stratton Garvin, J. Peterson, and T. Kock. 2021. Assessment of Habitat Availability for Juvenile Chinook Salmon in the Willamette River. Oregon Chapter of the American Fisheries Society Annual Meeting, March 3-5. March 2021
White, J., R. Wallick, J. Peterson, R. Piaskowski, J. MacDonald, and B. Overstreet. 2019. Fish and flows: Quantifying the effects of flow management on rearing habitat for spring Chinook and winter steelhead in Willamette River using high-resolution hydraulic models. 55th Annual Meeting of the Oregon Chapter of the American Fisheries Society, March 4-8, Bend, OR. March 2019
Sidlauskas, B.L. H. Aydoğan, Á. Cortés, A.N. Black, B. Penaluna, and J. Peterson. 2021. Towards a deeper molecular and morphological understanding of Oregon’s native non-game fish diversity. Oregon Chapter of the American Fisheries Society Annual Meeting, March 3-5 March 2021
Schreck, C., Kent, M., Colvin, M.E., Benda, S., Sharpe, C., Peterson, J.T., Doland, B., Chitwood, R., Unrein, J., Caudill, C.C., Naugton, G. Evaluating potential causes and management of pre-spawning mortality in adult upper Willamette River Chinook salmon. Willamette Fisheries Science Review, Corvallis Oregon. February 5-7, 2013. February 2013
Schreck, C., B. Dolan, M. Kent, M. Colvin, J. Peterson. (2017). Stress, the immune system and maturation in Chinook salmon. International Congress of Comparative Endocrinology. Alberta, Canada. June 4-9, 2017. June 2017
Schreck, C. M. E. Colvin2, C. Sharpe, J. T. Peterson, M. Kent, S. Benda, B. Dolan, and C. C. Caudill. Evaluating Potential Causes And Management Of Pre-Spawning Mortality In Adult Upper<br> Willamette River Chinook Salmon. Willamette Fisheries Science Review, Corvallis OR, February 5-7 February 2013
Scheerer, P.D., J.T.Peterson, and S. Clements. 2015. An Evaluation of the Efficiency of Minnow Traps for Estimating the Abundance of Minnows in Desert Spring Systems. 7th Annual meeting of the Desert Fishes Council Annual Meeting, Death Valley National Park, CA. November 2015
Saenz, J. and J.T. Peterson. 2016. An adaptive decision-support tool for the conservation of least chub. 2016 Annual Meeting of the Western Division of the American Fisheries Society, Reno. March 2016
Saenz, J. and J.T. Peterson. 2015. The use of dynamic multi season occupancy models in the conservation of desert fishes. 7th Annual meeting of the Desert Fishes Council Annual Meeting, Death Valley National Park, CA. November 2015
Saenz, J. and J.T. Peterson. 2014. An adaptive framework for managing least chub in aridland wetlands. Annual Meeting of the Western Division of the American Fisheries Society, April 7-11, Mazatlan, MX. April 2014
Saenz, J. and J.T. Peterson. 2014. An adaptive framework for managing least chub in aridland wetlands. Annual Meeting of the Oregon Chapter of the American Fisheries Society, February 25-28, Eugene OR. February 2014
Saenz, J. and J.T. Peterson. 2013. An Adaptive Framework for Managing Least Chub in Aridland Wetlands. EPA Region 8 Wetland Capacity Building Workshop September 24 - 27, Salt Lake City, Utah. September 2013
Saenz, J. and J. Peterson 2013.THE USE OF DYNAMIC MULTI SEASON OCCUPANCY MODELS IN THE CONSERVATION OF DESERT FISHES. Annual meeting of the American Fisheries Society Oregon Chapter, Feb 18-21. February 2013
Rowe, J., A. Duarte, M.J. Adams, C.A. Pearl, and J.T. Peterson. 2017 “Factors influencing coexistence of native amphibians with invasive bullfrogs in the Willamette Valley, OR. Society for Northwestern Vertebrate Biology Annual Meeting. 27 February – 3 March 2017., Arcata, CA. March 2017
Pruitt, W.A., J.T. Peterson, and C.A. Jennings. 2013. Use of occupancy models to determine seasonal distribution and habitat use of stocked robust redhorse in the Ocmulgee River, Georgia. Spring Meeting of the Southern Division - American Fisheries Society. February 7-10, 2013. Nashville, TN February 2013
Peterson, J.T.,T. Neal, M. Kent, J. Sanders, and C. Schreck. 2019. Effects stressors on survival and dam passage of juvenile chinook salmon: implications for juvenile fish passage. Willamette Fisheries Science Review, Corvallis OR, February 12-13. February 2019
Peterson, J.T., and M.C. Freeman. 2016. Integrating Modeling, Monitoring, and Management to Reduce Critical Uncertainties in Water Resource Decision Making. 52nd Annual Meeting of American Fisheries Society Oregon Chapter. March 1-4, Seaside, Oregon March 2016
Peterson, J.T., M. Barajas, J.T. DeWeber. 2018. Multistate occupancy modeling for Longfin Smelt. Biennial Bay-Delta Science Conference, Sacramento, CA. September 2018
Peterson, J.T., J. Sanders, T. Neal, M. Kent and C. Schreck. 2020. The Willamette Copepod Research Program: Infection experiments and impacts on juvenile Chinook salmon. Willamette Fisheries Science Review, Corvallis OR, February 11-12 February 2020
Peterson, J.T., C.P Paukert, A.E. Rosenberger, S.K. Brewer. 2015. Standardized sampling: a call for gear calibration. 145th Annual Meeting of the American Fisheries Society, August 16-20, Portland OR. August 2015
Peterson, J.T., A.M. Romito, M.J. Conroy. 2014.Structured Decision Making for Brown Bear Management on National Park Service Lands in Alaska. International Association for Landscape Ecology 2014 Annual Symposium, May 18-21, Anchorage Alaska. May 2014
Peterson, J.T., A. Duarte, and K. McDonald. 2019. Transitioning the CVPIA fisheries program to a science-based prioritization and adaptive management process….progress? 55th Annual Meeting of the Oregon Chapter of the American Fisheries Society, March 4-8, Bend, OR. March 2019
Peterson, J.T., 2017. The development of a structured adaptive approach to prioritizing conservation and restoration of Chinook Salmon in the Central Valley. 35th Annual Salmonid Restoration Conference, March 29-April 1, Davis, CA. March 2017
Peterson, J.T. and M.C Freeman. 2013.Integrating Modeling, Monitoring, and Management to Reduce Critical Uncertainties in Water Resource Decision Making. 143nd Annual Meeting of the American Fisheries Society, September 8-12, Little Rock AR. September 2013
Peterson, J.T. and K. Boomer. 2015. Integrating multiple models, monitoring, and management to reduce uncertainties and improve wetland restoration decision making in Chesapeake Bay watersheds. . 23rd Biennial Conference of the Coastal and Estuarine Research Federation, Portland OR. November 2015
Peterson, J.T. and J. Sáenz. 2019. State dependent management of desert spring fish and their habitats. 55th Annual Meeting of the Oregon Chapter of the American Fisheries Society, March 4-8, Bend, OR. March 2019
Peterson, J.T. and J. Pease. 2019. Integrated tools for identifying optimal flow regimes for recovering spring Chinook Salmon in the Willamette River, Oregon. Annual Meeting of the American Fisheries Society, Reno NV. September 2019
Peterson, J.T. and A. Duarte. 2021. Decision Analysis to Identify Optimal State-Dependent Restoration Policies for Chinook Salmon11th Biennial Bay-Delta Science Conference, April 6-9, 2021 April 2021
Peterson, J.T. Pease, JE. L. Whitman, J. White, L. Stratton Garvin, S. Rounds, and R. Wallick. 2021. Willamette Instream Flow Project: Integrated Tools For The Evaluation Of Alternative Flow Management Strategies. Oregon Chapter of the American Fisheries Society Annual Meeting, March 3-5 March 2021
Peterson, J.T. Pease, JE. L. Whitman, J. White, L. Stratton Garvin, S. Rounds, and R. Wallick. 2020. Willamette Instream Flow Project: Integrated Tools For The Evaluation Of Alternative Flow Management Strategies. Willamette Fisheries Science Review, Corvallis OR, February 11-12 February 2020
Peterson, J.T. 2017. Integrating multiple models, monitoring, and management to reduce uncertainties and improve water resource management decision making. Society for Freshwater Science Annual Meeting, June 4-8, 2017, Raleigh, NC. June 2017
Peterson, J.T. 2016. Salmon Population Model and linkage to Structured Decision-Making. 2016 Bay-Delta Science Conference, Sacramento CA. October 2016
Peterson, J.T. 2016. Background on Adaptive Management and Decision Support Systems. Trinity River Science Symposium, March 29-30. Weaverville, CA. March 2016
Peterson, J.T. 2014.Influence of incomplete capture on fish monitoring and management: problems and solutions. Annual California Delta Science Conference, October 29-31, Sacramento, California. October 2014
Peterson, J.T. 2013.System-wide: Estimating juvenile habitat with stream channel characteristics. TRRP’s Scientific Advisory Board Review of Phase 1. Trinity River Restoration Program Science Symposium. Weaverville, CA. January 2013
Peterson, J.T. 2013. Integrating Monitoring, Research, and Management:Leveling the 3 legged stool. Annual meeting of the Salvelinus confluentus Curiosity Society, Aug 13-15, Anthony Lakes, OR. August 2013
Peterson, J.T. 2013. Decision Support System framework for adaptive management. Trinity River Restoration Program Science Symposium, Weaverville CA. TRRP’s Scientific Advisory Board Review of Phase 1 January 2013
Pease, JE. and J.T. Peterson. 2019. Willamette River Instream Ecological Flow Science Review and Analyses Prioritization. 2019. Willamette Fisheries Science Review. Corvallis OR, February 12-23 February 2019
Pease, JE. L. Whitman, K. Schroeder, and J.T. Peterson. 2020. Willamette instream flow project: estimation and modeling of Chinook salmon demographics. Willamette Fisheries Science Review, Corvallis OR, February 11-12 February 2020
Pease, J.E., L. Whitman, K. Schroeder, and J.T. Peterson. 2020. Spring Chinook Salmon survival and movement in response to altered flows and temperatures in the Willamette River, Oregon. Annual Meeting of the Oregon Chapter of the American Fisheries Society, March 4-6, Bend, OR. March 2020
Pease, J., J.T. Peterson, L. Whitman, K. Schroder. 2019. Spring Chinook Salmon Survival and Movement in Response to Altered Flows, Habitat Availability, and Temperatures in the Willamette River, Oregon. Annual Meeting of the American Fisheries Society, Reno NV. September 2019
Pacifici, K, MJ Conroy, R.J. Cooper, and J.T. Peterson. 2009. Occupancy Estimation within an Adaptive Sampling Design: A Calibrated Bayesian Approach to Evaluating an Integrated Estimator for Rare or Elusive Species. Euring Analytical Conference. Pescara, Italy. September 14-20. September 2009
Pacifici, K*, M.J. Conroy, R.J. Cooper, and J.T. Peterson. 2008. Occupancy estimation within an adaptive sampling design: Evaluation of an integrated estimator for rare or elusive species. The Wildlife Society Annual Conference. Miami, Florida. November 8-12. November 2008
Neal, T., M.L. Kent, J. Sanders, C.B. Schreck, and J. Peterson. 2020. Experimental infection of the parasitic copepod on juvenile Chinook salmon. Annual Meeting of the Oregon Chapter of the American Fisheries Society, March 4-6, Bend, OR. March 2020
Neal, T., M. L. Kent, J. Sanders, C.B. Schreck, and J.T. Peterson. 2021. Effects of saltwater transition of juvenile Chinook salmon infected with a parasitic copepod. Oregon Chapter of the American Fisheries Society Annual Meeting, March 3-5 March 2021
Millers, K.A. and J.T. Peterson. 2016. Dealing with uncertain data: An evaluation of long-term fish monitoring in the San Francisco Bay-Delta. 2016 Bay-Delta Science Conference, Sacramento CA. October 2016
Millers, K.A and J.T Peterson. 2016. Are the fishes imperiled? Evaluating uncertainty from long-term fish monitoring in the San Francisco Delta. International Statistical Ecology Conference 2016, Seattle. June 2016
Millers, K. and J.T Peterson. 2016.Evaluating the uncertainty in long-term fish monitoring data in the San Francisco Estuary . The International Society for Ecological Modelling Global Conference 2016. 8-12 May, Towson University, MD. May 2016
McDonnell, K. and J.T. Peterson. 2015. A state-space approach to the estimation of juvenile out-migrant survival of Chinook salmon (Oncorhynchus tshawytscha) in the Lower American River, California. 145th Annual Meeting of the American Fisheries Society, August 16-20, Portland OR. August 2015
McDonnell, K. and J.Peterson. 2013.An example of quantitatively identifying the optimal spatial arrangement of freshwater salmon habitat restoration/improvement projects in a California Stream. Annual meeting of the American Fisheries Society Oregon Chapter, Feb 18-21. February 2013
McDonald, K. and J.T. Peterson. 2019. Quantitative decision analysis for identifying the optimal allocation of Chinook Salmon habitat restoration projects in a California Central Valley stream. 55th Annual Meeting of the Oregon Chapter of the American Fisheries Society, March 4-8, Bend, OR. March 2019
M. E. Colvin, J. T. Peterson, C. Sharpe, S. Benda, M. Kent, B. Dolan, C. C. Caudill, and C. Schreck. Development of a tool to evaluate outplanting strategies and prespawn mortality of Upper Willamette River spring Chinook. Annual Meeting of the Western Division of the American Fisheries Society, Boise, Idaho. April 15-18, 2013 April 2013
Kurnianto, S., J.T. Peterson, J. Selker, J.B. Kauffman, D. Murdiyarso. 2016. The impact of land cover change on the hydraulic conductivity in tropical peatlands. 15th International Peat Congress. August 15-19 Kuching, Sarawak, Malaysia. August 2016
Kurnianto S., Peterson J., Selker J., Murdiyarso D., Kauffman J. 2017. Variablity of hydraulic conductivity in tropical peatlands. 125th Anniversary Congress 2017. 18-22 September 2017. Freiburg Germany. September 2017
Kent, M.L., C.B. Schreck, C. Herron, and J.T. Peterson. 2016. Salmon life histories and environment effect modes of transmission of pathogens. 52nd Annual Meeting of American Fisheries Society Oregon Chapter. March 1-4, Seaside, Oregon. March 2016
Jensen, A.J., B. Cox, and J.T. Peterson. 2021. Simulations of a Mixed-Stock Salmon Fishery Provide Fish Behavioral Insights and Evaluate Harvest Models. Oregon Chapter of the American Fisheries Society Annual Meeting, March 3-5 March 2021
Jensen, A., J. Peterson, and C. Schreck. 2018. Differentiating Chinook Salmon from a Mixed Stock Fishery to Distinct Life Histories Using Morphometric Analysis. Annual Meeting of the Oregon Chapter of the American Fisheries Society, Eugene OR March 2018
Jensen, A., C. Schreck, and J.T. Peterson. 2019. Novel Chinook salmon stock discrimination in recreational fishery management. Annual Meeting of the American Fisheries Society, Reno NV. September 2019
Jensen, A. and J. Peterson. 2020. What can creel data tell us about angling behavior in a recreational salmon fishery? Annual Meeting of the Oregon Chapter of the American Fisheries Society, March 4-6, Bend, OR. March 2020
Jensen, A, C.B. Schreck, S. Bohn, K. O’Malley, J.T. Peterson. 2019. A story of tags, fins, and simulations: How integrating genetics in creel surveys can improve decision making. 55th Annual Meeting of the Oregon Chapter of the American Fisheries Society, March 4-8, Bend, OR. March 2019
Irwin ER, MC Freeman, JT Peterson, MC Lloyd, K Ouellette, KDM Kennedy. 2018. Long-Term Adaptive Management of Flows Below a Hydropeaking Dam. Southern Division American Fisheries Society, San Juan, Puerto Rico (Invited) March 2018
Irwin ER, MC Freeman, JT Peterson, MC Lloyd, K Ouellette, KDM Kennedy. Ecological Responses Associated with Long-Term Adaptive Management of Flows Below a Hydropeaking Dam August 2018
Homer, M.D., C.A. Jennings, and J.T. Peterson. 2013. Comparison of the precision of ages from three techniques and back-calculated lengths for introduced blue catfish (Ictalurus furcatus). Texas Chapter - American Fisheries Society, Jan. 17-19, 2013. Montgomery, Texas. January 2013
Homer Jr, M.D., C.A. Jennings, and J.T. Peterson. 2013. Comparison of the precision of ages from three techniques and back-calculated lengths for introduced blue catfish. Spring Meeting of the Southern Division - American Fisheries Society. Feb.7-10, 2013. Nashville, TN. February 2013
Hall, J.D., J.T. Peterson, and K.M. Dugger. 2015. Estimating trout mortality caused by feeding of the chestnut lamprey in the Manistee River, Michigan. 145th Annual Meeting of the American Fisheries Society, August 16-20, Portland, OR August 2015
Fritts, A., J. Peterson, P. Hazelton, and R. Bringolf. 2014. Laboratory evaluation of physiological biomarkers of stress in freshwater mussels. Mississippi River Research Consortium. 23-25 April 2014. La Crosse, WI. Platform Presentation. April 2014
Duarte, A., and J.T. Peterson. 2018. An integrated population model to estimate survival, growth, and movement transition probabilities for juvenile salmonids. Biennial Bay-Delta Science Conference, Sacramento, CA. September 2018
Duarte, A., J.T. Peterson, M.A. Adams. 2017 N-mixture models in the presence of unmodeled heterogeneity in count data: when can we trust the inferences? Oregon Chapter of The Wildlife Society 2017 Annual Meeting, February 8-10, Pendleton, Oregon. February 2017
Duarte, A., C.A. Pearl, M.J.Adams, and J.T. Peterson. 2016. The use of integrated population models to document amphibian reintroduction efforts within restored habitat. North American Congress for Conservation Biology. Madison, WI. July 2016
Duarte, A., C.A. Pearl, M.J. Adams, and J.T. Peterson. 2017.“The use of integrated population models to evaluate amphibian reintroduction efforts within restored habitat” at The Wildlife Society Annual Conference, 15–19 October 2016, Raleigh, NC. October 2017
Duarte, A. and J.T. Peterson. 2019. An adaptive management strategy for Chinook salmon in California’s Central Valley. 55th Annual Meeting of the Oregon Chapter of the American Fisheries Society, March 4-8, Bend, OR. March 2019
Duarte, A. and J.Peterson. 2020. The role of optimization in solving decision-support models for natural resource management. Annual Meeting of the Oregon Chapter of the American Fisheries Society, March 4-6, Bend, OR. March 2020
Duarte, A. J.T. Peterson, C.A. Pearl, B. McCreary, S.K. Galvan, J.C. Rowe, and M.J. Adams. 2018. Habitat succession and landscape connectivity govern meta-demographic rates of a threatened anuran. 25th Annual Meeting of the Wildlife Society. Cleveland OH. October 2018
Duarte ,A. and J.T. Peterson. 2019. Decision analysis to identify optimal state-dependent restoration policies for Chinook salmon in California’s Central Valley. Annual Meeting of the American Fisheries Society, Reno NV. September 2019
DeWeber, T.J. and J.T. Peterson. 2017. A decision support process to identify instream flows for the Willamette River ecosystem. Willamette Fisheries Science Review, Corvallis OR, February 7-8. February 2017
DeWeber, J.T. and J.T Peterson. 2018. Water in the Willamette: Identifying environmental flows for the ecosystem and listed salmonids. Annual Meeting of the Oregon Chapter of the American Fisheries Society, Eugene OR March 2018
Cooper, R. J., R. S. Mordecai, B. G. Mattsson, M. J. Conroy, K. Pacifici, J. T. Peterson, and C. T. Moore. 2008. Design for a region-wide adaptive search for the Ivory-billed Woodpecker with the objective of estimating occupancy and related parameters. Fourth International Partners in Flight Conference, 13-16 February 2008, McAllen, TX. February 2008
Colvin, M.E., J. T. Peterson, C. Sharpe, S. Benda1, M. Kent, B. Dolan, and C. Schreck 2014. Upper Willamette River spring Chinook prespawn mortality synthesis and modeling. Annual Meeting of the American Fisheries Society Oregon Chapter, February 25-28, Eugene OR. February 2014
Colvin, M.E., J. T. Peterson, C. Sharpe, S. Benda, C. Schreck, M. Kent, B. Dolan, and C. Caudill. 2013. Upper Willamette River spring Chinook prespawn mortality synthesis and modeling. Annual Meeting of the American Fisheries Society Oregon Chapter, Feb 18-21. February 2013
Carswell, B.L., J.T. Peterson, and C.A. Jennings. 2013. Abundance and diversity of sub-adult fishes in impounded South Carolina marshes: the effects of tidal exchange. GA Chapter - American Fisheries Society. Jekyll Island, GA. January 2013
C. R. Jackson, J. R. Webster, K. K. Cecala, J. R. Frisch, J. E. Kirsch, J. C. Maerz, D. S. Leigh, J. T. Peterson, C. M. Pringle, and J. D. Knoepp. 2018. Hydrologic, Morphologic, and Water Quality Effects of Rural Development in Streams of the Southern Blue Ridge Mountains. Annual Meeting of the Society for Freshwater Science, May 20-24, Detriot MI. May 2018
Boomer, K. and J.T. Peterson. 2015. Downscaling watershed model predictions and characterizing structural uncertainty to support decision-making and develop monitoring priorities. 23rd Biennial Conference of the Coastal and Estuarine Research Federation, Portland OR. November 2015
Barajas, M. and J.T. Peterson. 2016. Modeling alternative conservation strategies for Klamath Basin sucker recovery. 52nd Annual Meeting of American Fisheries Society Oregon Chapter. March 1-4, Seaside, Oregon March 2016
Barajas, M. and J.T. Peterson. 2015. The development of a structured adaptive approach to Klamath Basin sucker recovery planning. 145th Annual Meeting of the American Fisheries Society, August 16-20, Portland OR. August 2015
Technical Publications Publication Date
Thurow, R. F., J. T. Peterson, C. A. Larsen, and J. W. Guzevich. 2003. Development of Bull Trout Sampling Protocols. Final Report to U.S. Fish and Wildlife Service, Aquatic Resources Division, Lacey, WA. July 2003
Scheerer, P.D., S. Clements, R. Jacobsen, and J.T. Peterson. 2012. Warner Sucker Investigations (Honey Creek). ANNUAL PROGRESS REPORT, FISH RESEARCH PROJECT OREGON. Oregon Department of Fisheries and Wildlife, Corvallis, Oregon. June 2012
Scheerer, P.D., J.T. Peterson, and S. Clements. 2017. 2016 Warner Sucker Investigations (Lower Twentymile Creek). Annual Progress Report, Fish Research Project Oregon. Oregon Department of Fisheries and Wildlife, Corvallis, Oregon. January 2017
Scheerer, P.D., J.T. Peterson, and S. Clements. 2017. 2016 Foskett Spring Speckled Dace Investigations. Annual Progress Report, Fish Research Project Oregon. Oregon Department of Fisheries and Wildlife, Corvallis, Oregon. January 2017
Scheerer, P.D., J.T. Peterson, and S. Clements. 2017. 2016 Borax Lake Chub investigations. Annual Progress Report, Fish Research Project Oregon. Oregon Department of Fisheries and Wildlife, Corvallis, Oregon. January 2017
Scheerer, P.D., J.T. Peterson, and S. Clements. 2016. 2016 Foskett Spring Speckled Dace Investigations. Annual Progress Report, Fish Research Project Oregon. Oregon Department of Fisheries and Wildlife, Corvallis, Oregon. January 2016
Scheerer, P.D., J.T. Peterson, and S. Clements. 2016. 2015 Warner Sucker Investigations (Lower Twentymile Creek). Annual Progress Report, Fish Research Project Oregon. Oregon Department of Fisheries and Wildlife, Corvallis, Oregon. January 2016
Scheerer, P.D., J.T. Peterson, and S. Clements. 2015. 2014 Warner Sucker Investigations (Lower Twentymile Creek). Annual Progress Report, Fish Research Project Oregon. Oregon Department of Fisheries and Wildlife, Corvallis, Oregon. January 2015
Scheerer, P.D., J.T. Peterson, and S. Clements. 2015. 2014 Foskett Spring Speckled Dace Investigations. Annual Progress Report, Fish Research Project Oregon. Oregon Department of Fisheries and Wildlife, Corvallis, Oregon. January 2015
Scheerer, P.D., J. Peterson, and M.H. Meeuwig. 2017. Review and Synthesis of Information and Data Available for Umpqua Chub (1987 – 2016). Oregon Department of Fish and Wildlife Fish Research Project Report, Corvallis. 68 pp November 2017
Scheerer, P. D., J. T. Peterson, and M. H. Meeuwig. 2017. Distribution and Abundance of Pit Sculpin in Drews and Camp Creeks, Goose Lake Basin, Oregon. Oregon Department of Fish and Wildlife, Annual Progress Report, Corvallis. 19 p. January 2017
Romito, A., J.T. Peterson, and M.J. Conroy. 2014. Structured Decision Making for Brown Bears on National Park Service Lands in Alaska - Integration of Monitoring to Inform Management. Final Report to the U.S. Geological Survey. Warnell School of Forestry and Natural Resources, University of Georgia, Athens. September 2014
Romito, A., J.T. Peterson, and M.J. Conroy. 2012. Structured Decision Making for Brown Bears on National Park Service Lands in Alaska - Integration of Monitoring to Inform Management. Annual Report to the U.S. Geological Survey. Warnell School of Forestry and Natural Resources, University of Georgia, Athens. December 2012
R.F. Thurow, J.T. Peterson, and J.W. Guzevich 2001. Development of Bull Trout Sampling Protocols. Final Report to U.S. Fish and Wildlife Service,Aquatic Resources Division, Lacey, WA. September 2001
Peterson,J.T.,J.W. McCargo and J.C. Ruiz.2002.An evaluation of drought impacts on fish communities in the lower Flint River Basin, Georgia. Final Report to U.S. Fish and Wildlife Service, Panama City,Florida(Agreement#1448-41410-01-N002). January 2002
Peterson,J.T. and N.P. Banish.2002.The evaluation of sampling conditions across the bull trout range in Washington State.Final Report to U.S. Fish and Wildlife Service, Aquatic Resources Division, Lacey, Washington(Agreement#134100N001). January 2002
Peterson,J.T. and J. Zhu.2004.CapPost-Capture and posterior probability of presence estimation, Users guide Version 1.0.Final Report to USDA Forest Service, Rocky Mountain Research Station, Idaho(Agreement#03-JV-11222014-241). January 2004
Peterson, J.T., and J. Saenz. 2013. THE DEVELOPMENT OF AN ADAPTIVE, DECISION-SUPPORT TOOL FOR THE CONSERVATION AND RECOVERY OF LEAST CHUB, IOTICHTHYS PHLEGETHONTIS. Interim final report, December 2013. Department of Fisheries and Wildlife, 104 Nash Hall, Oregon State University, Corvallis, Oregon. December 2013
Peterson, J.T., and J. Saenz. 2012. The development of an adaptive, decision-support tool for the conservation and recovery of least chub, Iotichthys phlegethontis. 2011. Annual Report to the Bureau of Land Department of Fisheries and Wildlife, 104 Nash Hall, Oregon State University, Corvallis, Oregon. December 2011
Peterson, J.T., S. Whitlock, and A. Duarte. 2018. Evaluation of California Central Valley Project and State Water Project Fish Salvage Estimators. Draft task Completion Report to Metropolitan Water District of Southern California, August 2018, 23 pp. August 2018
Peterson, J.T., N. P. Banish, and R. F. Thurow. 2003. Analysis of Movement Patterns of Stream-dwelling Salmonids in Response to Three Survey Methods. Final Report to U.S. Fish and Wildlife Service, Aquatic Resources Division, Lacey, WA. July 2003
Peterson, J.T., M.C. Freeman, J. LaFontaine, C. Elliott. 2013. Multi-resolution assessment of potential climate change effects on aquatic and hydrologic dynamics part ii: integration and validation. Report to USGS National Climate Change and Wildlife Science Center. Reston VA. January 2013
Peterson, J.T., K. McDonnell, M.C. Colvin. 2014. Coarse Resolution Planning Tools for Prioritizing Central Valley Project Improvement Act Fisheries Activities. Draft Progress Report to Central Valley Project Improvement Act Fisheries Program. August 2014
Peterson, J.T., J. Sanders, M.L. Kent, T. Neal, and C.B. Schreck. 2019. Effects of acute and chronic stressors on survival and dam passage of juvenile Chinook salmon infected with a parasitic copepod, Salmincola californiensis: implications for fish collection facilities. Draft Annual Report for U.S. Army Corps of Engineers, Portland District, Portland OR. December 2019
Peterson, J.T., E. McCreless, A. Duarte. 2019. Structured Decision Making for Scientific Management in the San Francisco Bay-Delta. Annual Progress Report to U.S. Bureau of Reclamation, Bay-Delta Office. May 2019
Peterson, J.T., C.R. Jackson, G. Li, J. McCargo, and R. McPherson. 2003. The development and evaluation of tools for evaluating flow requirements in streams in the Lower Flint River Basin, Georgia. Annual Report to the Georgia Department of Natural Resources, Social Circle, GA. January 2003
Peterson, J.T., C. Sharpe, M.L. Kent, C.B. Schreck, J. Sanders, and J.T. DeWeber. 2018. Fall Creek Prespawn Mortality pilot 2017. Draft Annual Report for U.S. Army Corps of Engineers Portland District, Portland OR. December 2018
Peterson, J.T., A. Duarte, K. McDonell. 2019. ADAPTIVE MANAGEMENT OF CENTRAL VALLEY PROJECT FISHERIES PHASES I - V. Draft final report to the US Fish and Wildlife Service, Central Valley Improvement Act Program, Sacramento CA. January 2020
Peterson, J.T. and S. W. Craven. 2007. The development of a quantitative decision models for evaluating the effects of river regulation and water use on native fishes in the Chattahoochee River National Recreation Area. Final Report to the National Park Service, Atlanta, Georgia. December 2007
Peterson, J.T. and J.T. Deweber. 2018. Associations and quasi-extinction estimates for abundance indices and occupancy estimates for San Francisco bay delta fish species. Draft task Completion Report to Metropolitan Water District of Southern California, July 2018, 64 pp. July 2018
Peterson, J.T. and J.M. Meador. 2008. Design of a Long Term Monitoring Program for Freshwater Mussels in the Lower Altamaha River Basin. Final Report to the Georgia Department of Natural Resources, Social Circle, Georgia. August 2008
Peterson, J.T. and J. Saenz. 2015. The Development of An Adaptive, Decision-Support Tool For The Conservation And Recovery Of Least Chub, Iotichthys Phlegethontis Report to Bureau of Land Management. May 2015. Department of Fisheries and Wildlife, 104 Nash Hall, Oregon State University, Corvallis, Oregon. May 2015
Peterson, J.T. and J. Dunham. 2001. Combining inferences from models of capture efficiency, detectability, and suitable habitat to classify landscapes for conservation of threatened bull trout, Salvelinus confluentus. Final Report to U.S. Fish and Wildlife Service, Aquatic Resources Division, Lacey, WA. August 2001
Peterson, J.T. B. J. Freeman, M. C. Freeman, C. Straight, A.Price and G. Anderson. 2010. SCIENCE SUPPORT FOR THE UPPER COOSA BASIN PHASE I. Final Report to the US Fish and Wildlife Service, Ecological Services, Athens GA. June 2010
Peterson, J.T. B. J. Freeman, E. Kramer, E. Irwin, M. C. Freeman, C. Straight, A. Wimberley, and J. C. Ruiz. 2004. Aquatic Gap: Regional analysis of biodiversity in the ACT/ACF Basins. U.S. Geological Survey, GAP Analysis Program, Moscow, Idaho. February 2004
Peterson, J.T. 2013.Coarse Resolution Planning Tools for Prioritizing Central Valley Project Improvement Act Fisheries Activities, Sturgeon Model. Progress Report to CVPIA Fisheries Program, Sacramento CA. June 2013
Peterson, J.T. 2013.Coarse Resolution Planning Tools for Prioritizing Central Valley Project Improvement Act Fisheries Activities, Steelhead Model. Progress Report to CVPIA Fisheries Program, Sacramento CA. July 2013
Peterson, J.T. 2013.Coarse Resolution Planning Tools for Prioritizing Central Valley Project Improvement Act Fisheries Activities, Chinook Salmon Model. Progress Report to CVPIA Fisheries Program, Sacramento CA. June 2013
Peterson, J.T. 2003. Toward the development of a common framework for assessing the distribution and potential threats to bull trout. Final Report to U.S. Fish and Wildlife Service, Aquatic Resources Division, Lacey, WA. December 2002
Peterson, J., J. Dunham, P. Howell, S. Bonar, R. Thurow. 2002. Protocol for determining bull trout presence. Western Division of the American Fisheries Society. March 2002
Peterson, J., J. Dunham, P. Howell, S. Bonar, R. Thurow. 2001 Interim protocol for determining bull trout presence. Western Division of the American Fisheries Society. March 2001
Peterson, J. T., C. R. Jackson, G. Li, J. McCargo, and R. McPherson. 2006. The development and evaluation of tools for evaluating flow requirements in streams in the Lower Flint River Basin, Georgia. Report to the Georgia Department of Natural Resources, Social Circle, Georgia. January 2006
Peterson, J. T., C. R. Jackson, C. Shea, J. Romeis, and K. Rugel. 2010. Lower Flint River Basin Mussel Habitat Assessment and Monitoring Project, Georgia. Report to the Georgia Department of Natural Resources, Social Circle, Georgia. June 2010
Peterson, J. T. 2000. Development of interim tools for predicting bull trout detection probabilities. Final Report to Washington Department of Natural Resources, Olymipa, WA. 28p. January 2000
Oregon Department of Fish and Wildlife. 2021. Biological review, occupancy and abundance, and sampling considerations for Umpqua Chub status and trend monitoring. Oregon Department of Fish and Wildlife – Science Bulletin 2021-01, Salem, OR | Download March 2021
Kennedy, K. M., E. R. Irwin, M. C. Freeman, and J. Peterson. 2006. Development of a decision support tool and procedures for evaluating dam operation in the Southeastern United States. Science Support Partnership Program Project Final Report to USGS and USFWS. June 2006
Kauffman, J.B., I. Basuki, V. Arifanti, G. Anshari, D. Hadriyanto, J. Peterson and D. Murdiyarso. 2016. The Kalimantan Wetlands and Climate Change Project (KWACs), Progress Report. Prepared for: U.S. Agency for International, Development American Embassy – Jakarta, Jl. Medan Merdeka Selatan No. 3-5, Jakarta 10110, Indonesia. July 2016
Kauffman, J.B., I. Basuki, V. Arifanti, G. Anshari, D. Hadriyanto, J. Peterson and D. Murdiyarso. 2015. The Kalimantan Wetlands and Climate Change Project (KWACs), Progress Report. Prepared for: U.S. Agency for International, Development American Embassy – Jakarta, Jl. Medan Merdeka Selatan No. 3-5, Jakarta 10110, Indonesia. September 2015
Kauffman, J.B., I. Basuki, V. Arifanti, G. Anshari, D. Hadriyanto, J. Peterson and D. Murdiyarso. 2014. The Kalimantan Wetlands and Climate Change Project (KWACs), Progress Report. Prepared for: U.S. Agency for International, Development American Embassy – Jakarta, Jl. Medan Merdeka Selatan No. 3-5, Jakarta 10110, Indonesia. September 2014
Freeman, M.C., J.T. Peterson, E.R. Irwin, and B.J. Freeman. 2003. Distribution and Status of At-Risk Aquatic Taxa in the Upper Tallapoosa River System, Georgia and Alabama. Final Report to U.S. Fish and Wildlife Service, Athens, Georgia. July 2003
Duarte, A. and J.T. Peterson. 2017 Fitting N-mixture models to count data with unexplained heterogeneity: bias, diagnostics, and alternative approaches. Task Completion Report to Metropolitan Water District of Southern California, 24 July 2017, 80 pp. July 2017
DeWeber, J.T. and J.T. Peterson. 2017. Science Synthesis and Decision Support for Mainstem Willamette River Instream Flows. Report Prepared for U. S. Army Corps of Engineers Portland District – Willamette Valley Project September 2017
Conroy, M. J., J. T. Peterson, R. J. Cooper, C. T. Moore, B. J. Mattsson, R. S. Mordecai, and K. Pacifici. 2008. An adaptive sample survey design for the ivory billed woodpecker. Final Report to USGS/CRU. | Download March 2008
Conroy, M. J., J. T. Peterson, C. T. Moore, J. Runge, J. Howell, and Z. Zhong. 2007. The effects of hydrologic stressors on wading bird foraging distributions in the Everglades from 1985 2000. Final Report to South Florida Water Management District. | Download May 2007